-
1
-
-
0035909370
-
The bacteriophage straight phi29 portal motor can package DNA against a large internal force
-
Smith, D. E., Tans, S. J., Smith, S. B., Grimes, S., Anderson, D. L., and Bustamante, C. (2001) The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature 413, 748-752
-
(2001)
Nature
, vol.413
, pp. 748-752
-
-
Smith, D.E.1
Tans, S.J.2
Smith, S.B.3
Grimes, S.4
Anderson, D.L.5
Bustamante, C.6
-
2
-
-
37749051185
-
Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29
-
Rickgauer, J. P., Fuller, D. N., Grimes, S., Jardine, P. J., Anderson, D. L., and Smith, D. E. (2008) Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29. Biophys. J. 94, 159-167
-
(2008)
Biophys. J.
, vol.94
, pp. 159-167
-
-
Rickgauer, J.P.1
Fuller, D.N.2
Grimes, S.3
Jardine, P.J.4
Anderson, D.L.5
Smith, D.E.6
-
3
-
-
0021783271
-
The DNA translocating vertex of dsDNA bacteriophage
-
Bazinet, C., and King, J. (1985) The DNA translocating vertex of dsDNA bacteriophage. Annu. Rev. Microbiol. 39, 109-129
-
(1985)
Annu. Rev. Microbiol.
, vol.39
, pp. 109-129
-
-
Bazinet, C.1
King, J.2
-
4
-
-
0036307573
-
Bacteriophage p22 portal vertex formation in vivo
-
Moore, S. D., and Prevelige, P. E., Jr. (2002) Bacteriophage p22 portal vertex formation in vivo. J. Mol. Biol. 315, 975-994
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 975-994
-
-
Moore, S.D.1
Prevelige Jr., P.E.2
-
5
-
-
0016370643
-
P22 morphogenesis. I: Catalytic scaf-folding protein in capsid assembly
-
Casjens, S., and King, J. (1974) P22 morphogenesis. I: Catalytic scaf-folding protein in capsid assembly. J. Supramol. Struct. 2, 202-224
-
(1974)
J. Supramol. Struct.
, vol.2
, pp. 202-224
-
-
Casjens, S.1
King, J.2
-
6
-
-
0023682381
-
Initiation of P22 procapsid assembly in vivo
-
Bazinet, C., and King, J. (1988) Initiation of P22 procapsid assembly in vivo. J. Mol. Biol. 202, 77-86
-
(1988)
J. Mol. Biol.
, vol.202
, pp. 77-86
-
-
Bazinet, C.1
King, J.2
-
7
-
-
0030296886
-
Scaffolding mutants identifying domains required for P22 procapsid assembly and maturation
-
Greene, B., and King, J. (1996) Scaffolding mutants identifying domains required for P22 procapsid assembly and maturation. Virology 225, 82-96
-
(1996)
Virology
, vol.225
, pp. 82-96
-
-
Greene, B.1
King, J.2
-
8
-
-
0018232414
-
Structure of phage P22 coat protein aggregates formed in the absence of the scaffolding protein
-
Earnshaw, W., and King, J. (1978) Structure of phage P22 coat protein aggregates formed in the absence of the scaffolding protein. J. Mol. Biol. 126, 721-747
-
(1978)
J. Mol. Biol.
, vol.126
, pp. 721-747
-
-
Earnshaw, W.1
King, J.2
-
9
-
-
0032582665
-
Assembly of a tailed bacterial virus and its genome release studied in three dimensions
-
Tao, Y., Olson, N. H., Xu, W., Anderson, D. L., Rossmann, M. G., and Baker, T. S. (1998) Assembly of a tailed bacterial virus and its genome release studied in three dimensions. Cell 95, 431-437
-
(1998)
Cell
, vol.95
, pp. 431-437
-
-
Tao, Y.1
Olson, N.H.2
Xu, W.3
Anderson, D.L.4
Rossmann, M.G.5
Baker, T.S.6
-
10
-
-
17044395121
-
Conservation of the capsid structure in tailed dsDNA bacteriophages: The pseudoatomic structure of phi29
-
Morais, M. C., Choi, K. H., Koti, J. S., Chipman, P. R., Anderson, D. L., and Rossmann, M. G. (2005) Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29. Mol. Cell 18, 149-159
-
(2005)
Mol. Cell
, vol.18
, pp. 149-159
-
-
Morais, M.C.1
Choi, K.H.2
Koti, J.S.3
Chipman, P.R.4
Anderson, D.L.5
Rossmann, M.G.6
-
11
-
-
0034619668
-
Structure of the bacteriophage phi29 DNA packaging motor
-
Simpson, A. A., Tao, Y., Leiman, P. G., Badasso, M. O., He, Y., Jardine, P. J., Olson, N. H., Morais, M. C., Grimes, S., Anderson, D. L., Baker, T. S., and Rossmann, M. G. (2000) Structure of the bacteriophage phi29 DNA packaging motor. Nature 408, 745-750
-
(2000)
Nature
, vol.408
, pp. 745-750
-
-
Simpson, A.A.1
Tao, Y.2
Leiman, P.G.3
Badasso, M.O.4
He, Y.5
Jardine, P.J.6
Olson, N.H.7
Morais, M.C.8
Grimes, S.9
Anderson, D.L.10
Baker, T.S.11
Rossmann, M.G.12
-
12
-
-
0036301072
-
Detailed architecture of a DNA translocating machine: The high-resolution structure of the bacteriophage phi29 connector particle
-
Guasch, A., Pous, J., Ibarra, B., Gomis-Rüth, F. X., Valpuesta, J. M., Sousa, N., Carrascosa, J. L., and Coll, M. (2002) Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle. J. Mol. Biol. 315, 663-676
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 663-676
-
-
Guasch, A.1
Pous, J.2
Ibarra, B.3
Gomis-Rüth, F.X.4
Valpuesta, J.M.5
Sousa, N.6
Carrascosa, J.L.7
Coll, M.8
-
13
-
-
0038419606
-
Bacteriophage phi29 scaffolding protein gp7 before and after prohead assembly
-
Morais, M. C., Kanamaru, S., Badasso, M. O., Koti, J. S., Owen, B. A., McMurray, C. T., Anderson, D. L., and Rossmann, M. G. (2003) Bacteriophage phi29 scaffolding protein gp7 before and after prohead assembly. Nat. Struct. Biol. 10, 572-576
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 572-576
-
-
Morais, M.C.1
Kanamaru, S.2
Badasso, M.O.3
Koti, J.S.4
Owen, B.A.5
McMurray, C.T.6
Anderson, D.L.7
Rossmann, M.G.8
-
14
-
-
33846847658
-
Molecular dissection of o29 scaffolding protein function in an in vitro assembly system
-
Fu, C. Y., Morais, M. C., Battisti, A. J., Rossmann, M. G., and Prevelige, P. E., Jr. (2007) Molecular dissection of o29 scaffolding protein function in an in vitro assembly system. J. Mol. Biol. 366, 1161-1173
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 1161-1173
-
-
Fu, C.Y.1
Morais, M.C.2
Battisti, A.J.3
Rossmann, M.G.4
Prevelige Jr., P.E.5
-
15
-
-
70350128857
-
In vitro incorporation of the phage Phi29 connector complex
-
Fu, C. Y., and Prevelige, P. E., Jr. (2009) In vitro incorporation of the phage Phi29 connector complex. Virology 394, 149-153
-
(2009)
Virology
, vol.394
, pp. 149-153
-
-
Fu, C.Y.1
Prevelige Jr., P.E.2
-
16
-
-
33846237344
-
Macromolecular mass spectrometry and electron microscopy as complementary tools for investigation of the heterogeneity of bacteriophage portal assemblies
-
Poliakov, A., van Duijn, E., Lander, G., Fu, C. Y., Johnson, J. E., Prevelige, P. E., Jr., and Heck, A. J. (2007) Macromolecular mass spectrometry and electron microscopy as complementary tools for investigation of the heterogeneity of bacteriophage portal assemblies. J. Struct. Biol. 157, 371-383
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 371-383
-
-
Poliakov, A.1
Van Duijn, E.2
Lander, G.3
Fu, C.Y.4
Johnson, J.E.5
Prevelige Jr., P.E.6
Heck, A.J.7
-
17
-
-
0025923286
-
Regulation of the phage phi 29 prohead shape and size by the portal vertex
-
Guo, P. X., Erickson, S., Xu, W., Olson, N., Baker, T. S., and Anderson, D. (1991) Regulation of the phage phi 29 prohead shape and size by the portal vertex. Virology 183, 366-373
-
(1991)
Virology
, vol.183
, pp. 366-373
-
-
Guo, P.X.1
Erickson, S.2
Xu, W.3
Olson, N.4
Baker, T.S.5
Anderson, D.6
-
18
-
-
33750696329
-
Improving the performance of a quadrupole time-of-flight instrument for macromolecular mass spectrometry
-
van den Heuvel, R. H., van Duijn, E., Mazon, H., Synowsky, S. A., Lorenzen, K., Versluis, C., Brouns, S. J., Langridge, D., van der Oost, J., Hoyes, J., and Heck, A. J. (2006) Improving the performance of a quadrupole time-of-flight instrument for macromolecular mass spectrometry. Anal. Chem. 78, 7473-7483
-
(2006)
Anal. Chem.
, vol.78
, pp. 7473-7483
-
-
Van Den Heuvel, R.H.1
Van Duijn, E.2
Mazon, H.3
Synowsky, S.A.4
Lorenzen, K.5
Versluis, C.6
Brouns, S.J.7
Langridge, D.8
Van Der Oost, J.9
Hoyes, J.10
Heck, A.J.11
-
19
-
-
35148867690
-
Optimizing macromolecular tandem mass spectrometry of large non-covalent complexes using heavy collision gases
-
Lorenzen, K., Versluis, C., van Duijn, E., van den Heuvel, R. H., and Heck, A. J. (2007) Optimizing macromolecular tandem mass spectrometry of large non-covalent complexes using heavy collision gases. Int. J. Mass Spectrom. 268, 198-206
-
(2007)
Int. J. Mass Spectrom.
, vol.268
, pp. 198-206
-
-
Lorenzen, K.1
Versluis, C.2
Van Duijn, E.3
Van Den Heuvel, R.H.4
Heck, A.J.5
-
20
-
-
0026694947
-
In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis
-
Rosenfeld, J., Capdevielle, J., Guillemot, J. C., and Ferrara, P. (1992) In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis. Anal. Biochem. 203, 173-179
-
(1992)
Anal. Biochem.
, vol.203
, pp. 173-179
-
-
Rosenfeld, J.1
Capdevielle, J.2
Guillemot, J.C.3
Ferrara, P.4
-
21
-
-
0038526303
-
ZDOCK: An initial-stage protein-docking algorithm
-
Chen, R., Li, L., and Weng, Z. (2003) ZDOCK: an initial-stage protein-docking algorithm. Proteins 52, 80-87
-
(2003)
Proteins
, vol.52
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
22
-
-
4644327652
-
Native protein mass spectrometry: From intact oligomers to functional machineries
-
van den Heuvel, R. H., and Heck, A. J. (2004) Native protein mass spectrometry: from intact oligomers to functional machineries. Curr. Opin. Chem. Biol. 8, 519-526
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, pp. 519-526
-
-
Van Den Heuvel, R.H.1
Heck, A.J.2
-
23
-
-
34548215681
-
Protein complexes in the gas phase: Technology for structural genomics and proteomics
-
Benesch, J. L., Ruotolo, B. T., Simmons, D. A., and Robinson, C. V. (2007) Protein complexes in the gas phase: technology for structural genomics and proteomics. Chem. Rev. 107, 3544-3567
-
(2007)
Chem. Rev.
, vol.107
, pp. 3544-3567
-
-
Benesch, J.L.1
Ruotolo, B.T.2
Simmons, D.A.3
Robinson, C.V.4
-
24
-
-
56149087277
-
Native mass spectrometry: A bridge between interactomics and structural biology
-
Heck, A. J. (2008) Native mass spectrometry: a bridge between interactomics and structural biology. Nat. Methods 5, 927-933
-
(2008)
Nat. Methods
, vol.5
, pp. 927-933
-
-
Heck, A.J.1
-
25
-
-
0037086063
-
A tandem mass spectrometer for improved transmission and analysis of large macromolecular assemblies
-
Sobott, F., Hernández, H., McCammon, M. G., Tito, M. A., and Robinson, C. V. (2002) A tandem mass spectrometer for improved transmission and analysis of large macromolecular assemblies. Anal. Chem. 74, 1402-1407
-
(2002)
Anal. Chem.
, vol.74
, pp. 1402-1407
-
-
Sobott, F.1
Hernández, H.2
McCammon, M.G.3
Tito, M.A.4
Robinson, C.V.5
-
26
-
-
35148816658
-
Structural biology of RNA polymerase III: Mass spectrometry elucidates subcomplex architecture
-
Lorenzen, K., Vannini, A., Cramer, P., and Heck, A. J. (2007) Structural biology of RNA polymerase III: mass spectrometry elucidates subcomplex architecture. Structure 15, 1237-1245
-
(2007)
Structure
, vol.15
, pp. 1237-1245
-
-
Lorenzen, K.1
Vannini, A.2
Cramer, P.3
Heck, A.J.4
-
27
-
-
48249109172
-
High-resolution mass spectrometry of viral assemblies: Molecular composition and stability of dimorphic hepatitis B virus capsids
-
Uetrecht, C., Versluis, C., Watts, N. R., Roos, W. H., Wuite, G. J., Wingfield, P. T., Steven, A. C., and Heck, A. J. (2008) High-resolution mass spectrometry of viral assemblies: molecular composition and stability of dimorphic hepatitis B virus capsids. Proc. Natl. Acad. Sci. U.S.A. 105, 9216-9220
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 9216-9220
-
-
Uetrecht, C.1
Versluis, C.2
Watts, N.R.3
Roos, W.H.4
Wuite, G.J.5
Wingfield, P.T.6
Steven, A.C.7
Heck, A.J.8
-
28
-
-
33846222419
-
Determinants of bacteriophage varphi29 head morphology
-
Choi, K. H., Morais, M. C., Anderson, D. L., and Rossmann, M. G. (2006) Determinants of bacteriophage varphi29 head morphology. Structure 14, 1723-1727
-
(2006)
Structure
, vol.14
, pp. 1723-1727
-
-
Choi, K.H.1
Morais, M.C.2
Anderson, D.L.3
Rossmann, M.G.4
-
29
-
-
0041846956
-
MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides
-
Schilling, B., Row, R. H., Gibson, B. W., Guo, X., and Young, M. M. (2003) MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides. J. Am. Soc. Mass Spectrom. 14, 834-850
-
(2003)
J. Am. Soc. Mass Spectrom.
, vol.14
, pp. 834-850
-
-
Schilling, B.1
Row, R.H.2
Gibson, B.W.3
Guo, X.4
Young, M.M.5
-
30
-
-
0032489015
-
The cell as a collection of protein machines: Preparing the next generation of molecular biologists
-
Alberts, B. (1998) The cell as a collection of protein machines: preparing the next generation of molecular biologists. Cell 92, 291-294
-
(1998)
Cell
, vol.92
, pp. 291-294
-
-
Alberts, B.1
-
31
-
-
0033780164
-
Fitting atomic models into electron-microscopy maps
-
Rossmann, M. G. (2000) Fitting atomic models into electron-microscopy maps. Acta Crystallogr. D Biol. Crystallogr. 56, 1341-1349
-
(2000)
Acta Crystallogr. D Biol. Crystallogr.
, vol.56
, pp. 1341-1349
-
-
Rossmann, M.G.1
-
32
-
-
0034406521
-
Macromolecular electron microscopy in the era of structural genomics
-
Baumeister, W., and Steven, A. C. (2000) Macromolecular electron microscopy in the era of structural genomics. Trends Biochem. Sci. 25, 624-631
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 624-631
-
-
Baumeister, W.1
Steven, A.C.2
-
33
-
-
27744468403
-
Proteomics of organelles and large cellular structures
-
Yates, J. R., 3rd, Gilchrist, A., Howell, K. E., and Bergeron, J. J. (2005) Proteomics of organelles and large cellular structures. Nat. Rev. Mol. Cell Biol. 6, 702-714
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 702-714
-
-
Yates III, J.R.1
Gilchrist, A.2
Howell, K.E.3
Bergeron, J.J.4
-
34
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia coli
-
Butland, G., Peregrín-Alvarez, J. M., Li, J., Yang, W., Yang, X., Canadien, V., Starostine, A., Richards, D., Beattie, B., Krogan, N., Davey, M., Parkinson, J., Greenblatt, J., and Emili, A. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433, 531-537
-
(2005)
Nature
, vol.433
, pp. 531-537
-
-
Butland, G.1
Peregrín-Alvarez, J.M.2
Li, J.3
Yang, W.4
Yang, X.5
Canadien, V.6
Starostine, A.7
Richards, D.8
Beattie, B.9
Krogan, N.10
Davey, M.11
Parkinson, J.12
Greenblatt, J.13
Emili, A.14
-
35
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin, A. C., Aloy, P., Grandi, P., Krause, R., Boesche, M., Marzioch, M., Rau, C., Jensen, L. J., Bastuck, S., Dümpelfeld, B., Edelmann, A., Heurtier, M. A., Hoffman, V., Hoefert, C., Klein, K., Hudak, M., Michon, A. M., Schelder, M., Schirle, M., Remor, M., Rudi, T., Hooper, S., Bauer, A., Bouwmeester, T., Casari, G., Drewes, G., Neubauer, G., Rick, J. M., Kuster, B., Bork, P., Russell, R. B., and Superti-Furga, G. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440, 631-636
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dümpelfeld, B.10
Edelmann, A.11
Heurtier, M.A.12
Hoffman, V.13
Hoefert, C.14
Klein, K.15
Hudak, M.16
Michon, A.M.17
Schelder, M.18
Schirle, M.19
Remor, M.20
Rudi, T.21
Hooper, S.22
Bauer, A.23
Bouwmeester, T.24
Casari, G.25
Drewes, G.26
Neubauer, G.27
Rick, J.M.28
Kuster, B.29
Bork, P.30
Russell, R.B.31
Superti-Furga, G.32
more..
-
36
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin, A. C., Bösche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J. M., Michon, A. M., Cruciat, C. M., Remor, M., Höfert, C., Schelder, M., Brajenovic, M., Ruffner, H., Merino, A., Klein, K., Hudak, M., Dickson, D., Rudi, T., Gnau, V., Bauch, A., Bastuck, S., Huhse, B., Leutwein, C., Heurtier, M. A., Copley, R. R., Edelmann, A., Querfurth, E., Rybin, V., Drewes, G., Raida, M., Bouwmeester, T., Bork, P., Seraphin, B., Kuster, B., Neubauer, G., and Superti-Furga, G. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141-147
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bösche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
Höfert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
37
-
-
0042349690
-
Chemical cross-linking and mass spectrometry for protein structural modeling
-
Back, J. W., de Jong, L., Muijsers, A. O., and de Koster, C. G. (2003) Chemical cross-linking and mass spectrometry for protein structural modeling. J. Mol. Biol. 331, 303-313
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 303-313
-
-
Back, J.W.1
De Jong, L.2
Muijsers, A.O.3
De Koster, C.G.4
-
38
-
-
12544256528
-
Data-driven docking for the study of biomolecular complexes
-
van Dijk, A. D., Boelens, R., and Bonvin, A. M. (2005) Data-driven docking for the study of biomolecular complexes. FEBS J. 272, 293-312
-
(2005)
FEBS J.
, vol.272
, pp. 293-312
-
-
Van Dijk, A.D.1
Boelens, R.2
Bonvin, A.M.3
-
39
-
-
33745742438
-
Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions
-
Sinz, A. (2006) Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions. Mass Spectrom. Rev. 25, 663-682
-
(2006)
Mass Spectrom. Rev.
, vol.25
, pp. 663-682
-
-
Sinz, A.1
-
40
-
-
0018122625
-
Model for DNA packaging into bacteriophage T4 heads
-
Black, L. W., and Silverman, D. J. (1978) Model for DNA packaging into bacteriophage T4 heads. J. Virol. 28, 643-655
-
(1978)
J. Virol.
, vol.28
, pp. 643-655
-
-
Black, L.W.1
Silverman, D.J.2
-
41
-
-
0021336823
-
Formation of the prohead core of bacteriophage T4 in vivo
-
Traub, F., and Maeder, M. (1984) Formation of the prohead core of bacteriophage T4 in vivo. J. Virol. 49, 892-901
-
(1984)
J. Virol.
, vol.49
, pp. 892-901
-
-
Traub, F.1
Maeder, M.2
-
42
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) UCSF Chimera - a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
|