-
1
-
-
1542399989
-
FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of Genes
-
Al-Shahrour, F., Diaz-Uriarte, R. and Dopazo, J. (2004) FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of Genes. Bioinformatics 20: 578-580.
-
(2004)
Bioinformatics
, vol.20
, pp. 578-580
-
-
Al-Shahrour, F.1
Diaz-Uriarte, R.2
Dopazo, J.3
-
2
-
-
33745256005
-
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
-
Anisimova, M. and Gascuel, O. (2006) Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol 55: 539-552.
-
(2006)
Syst Biol
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
3
-
-
67650757433
-
TrimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
-
Capella-Gutierrez, S., Silla-Martinez, J.M. and Gabaldon, T. (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972-1973.
-
(2009)
Bioinformatics
, vol.25
, pp. 1972-1973
-
-
Capella-Gutierrez, S.1
Silla-Martinez, J.M.2
Gabaldon, T.3
-
4
-
-
56549119570
-
Turning a hobby into a job: How duplicated genes find new functions
-
Conant, G.C. and Wolfe, K.H. (2008) Turning a hobby into a job: how duplicated genes find new functions. Nat Rev Genet 9: 938-950.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 938-950
-
-
Conant, G.C.1
Wolfe, K.H.2
-
5
-
-
33644913722
-
Phloem-sap feeding by animals: Problems and solutions
-
Douglas, A. E. (2006) Phloem-sap feeding by animals: problems and solutions. J Exp Bot 57: 747-754.
-
(2006)
J Exp Bot
, vol.57
, pp. 747-754
-
-
Douglas, A.E.1
-
6
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar, R.C. (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioin-formatics 5: 113.
-
(2004)
BMC Bioin-formatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
7
-
-
0014800108
-
Distinguishing homologous from analogous proteins
-
Fitch, W.M. (1970) Distinguishing homologous from analogous proteins. Syst Zool 19: 99-113.
-
(1970)
Syst Zool
, vol.19
, pp. 99-113
-
-
Fitch, W.M.1
-
8
-
-
74049118261
-
Large-scale assignment of orthology: Back to phylogenetics?
-
Gabaldón, T. (2008) Large-scale assignment of orthology: back to phylogenetics? Genome Biol 9: 235.
-
(2008)
Genome Biol
, vol.9
, pp. 235
-
-
Gabaldón, T.1
-
9
-
-
0030807655
-
BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
-
Gascuel, O. (1997) BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14 (7): 685-695.
-
(1997)
Mol Biol Evol
, vol.14
, Issue.7
, pp. 685-695
-
-
Gascuel, O.1
-
10
-
-
77957928930
-
-
Accepted
-
Gerardo, N.M., Altincicek, B., Anselme, C., Atamian, H., Barri-beau, S.M., De Vos, M. et al. (2009) Immunity and defense in pea aphids, Acyrtosiphon pisum. Accepted.
-
(2009)
Immunity and Defense in Pea Aphids, Acyrtosiphon Pisum
-
-
Gerardo, N.M.1
Altincicek, B.2
Anselme, C.3
Atamian, H.4
Barri-Beau, S.M.5
De Vos, M.6
-
11
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S. and Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
12
-
-
36448938389
-
The human phylome
-
Huerta-Cepas, J., Dopazo, H., Dopazo, J. and Gabaldón, T. (2007) The human phylome. Genome Biol 8: R109.
-
(2007)
Genome Biol
, vol.8
-
-
Huerta-Cepas, J.1
Dopazo, H.2
Dopazo, J.3
Gabaldón, T.4
-
13
-
-
38549137819
-
PhylomeDB: A database for genome-wide collections of gene phylogenies
-
Huerta-Cepas, J., Bueno, A., Dopazo, J. and Gabaldón, T. (2008) PhylomeDB: a database for genome-wide collections of gene phylogenies. Nucleic Acids Res 36: D491-D496.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Huerta-Cepas, J.1
Bueno, A.2
Dopazo, J.3
Gabaldón, T.4
-
14
-
-
77649141259
-
Genome sequence of the pea aphid Acyrthosiphon pisum
-
International Aphid Genomics Consortium DOI 10.1371/journal.pbio.1000313
-
International Aphid Genomics Consortium (2010) Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biology, DOI 10.1371/journal.pbio.1000313.
-
(2010)
PLoS Biology
-
-
-
15
-
-
36749083631
-
Body lice and head lice (Anoplura: Pedicu-lidae) have the smallest genomes of any hemimetabolous insect reported to date
-
Johnston, J.S., Yoon, K.S., Strycharz, J.P., Pittendrigh, B.R. and Clark, J.M. (2007) Body lice and head lice (Anoplura: Pedicu-lidae) have the smallest genomes of any hemimetabolous insect reported to date. J Med Entomol 44: 1009-1012.
-
(2007)
J Med Entomol
, vol.44
, pp. 1009-1012
-
-
Johnston, J.S.1
Yoon, K.S.2
Strycharz, J.P.3
Pittendrigh, B.R.4
Clark, J.M.5
-
16
-
-
34250790725
-
Estimating the annotation error rate of curated GO database sequence annotations
-
Jones, C.E., Brown, A.L. and Baumann, U. (2007) Estimating the annotation error rate of curated GO database sequence annotations. BMC Bioinformatics 8: 170.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 170
-
-
Jones, C.E.1
Brown, A.L.2
Baumann, U.3
-
17
-
-
77957925998
-
-
submitted
-
Legeai, F., Shigenobu, S., Gauthier, J., Colbourne, J., Rispe, C., Collin, O. et al. (2009) AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. (submitted).
-
(2009)
AphidBase: A Centralized Bioinformatic Resource for Annotation of the Pea Aphid Genome
-
-
Legeai, F.1
Shigenobu, S.2
Gauthier, J.3
Colbourne, J.4
Rispe, C.5
Collin, O.6
-
18
-
-
84857229990
-
The tree versus the forest: The fungal tree of life and the topological diversity within the yeast phylome
-
Marcet-Houben, M. and Gabaldón, T. (2009) The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome. PLoS ONE 4: e4357.
-
(2009)
PLoS ONE
, vol.4
-
-
Marcet-Houben, M.1
Gabaldón, T.2
-
19
-
-
34447332246
-
Why are there so many insect species? Perspectives from fossils and phylogenies
-
Mayhew, P.J. (2007) Why are there so many insect species? Perspectives from fossils and phylogenies. Biol Rev Camb Philos Soc 82: 425-454.
-
(2007)
Biol Rev Camb Philos Soc
, vol.82
, pp. 425-454
-
-
Mayhew, P.J.1
-
20
-
-
42349098813
-
Germ cell cluster formation and ovariole structure in viviparous and oviparous generations of the aphid Stomaphis quercus
-
Pyka-Fosciak, G. and Szklarzewicz, T. (2008) Germ cell cluster formation and ovariole structure in viviparous and oviparous generations of the aphid Stomaphis quercus. Int J Dev Biol 52: 259-265.
-
(2008)
Int J Dev Biol
, vol.52
, pp. 259-265
-
-
Pyka-Fosciak, G.1
Szklarzewicz, T.2
-
21
-
-
41949090434
-
The genome of the model beetle and pest Tribolium castaneum
-
Richards, S., Gibbs, R.A., Weinstock, G.M., Brown, S.J., Denell, R., Beeman, R.W. et al. (2008) The genome of the model beetle and pest Tribolium castaneum. Nature 452: 949-955.
-
(2008)
Nature
, vol.452
, pp. 949-955
-
-
Richards, S.1
Gibbs, R.A.2
Weinstock, G.M.3
Brown, S.J.4
Denell, R.5
Beeman, R.W.6
-
22
-
-
0019887799
-
Identification of Common Molecular Subsequences
-
Smith, T.F. and Waterman, M.S. (1981) Identification of Common Molecular Subsequences. Journal of Molecular Biology 147: 195-197.
-
(1981)
Journal of Molecular Biology
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
23
-
-
0032900532
-
Genome phylogeny based on gene content
-
Snel, B., Bork, P. and Huynen, M.A. (1999) Genome phylogeny based on gene content. Nat Genet 21: 108-110.
-
(1999)
Nat Genet
, vol.21
, pp. 108-110
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
24
-
-
34547585235
-
Phylemon: A suite of web tools for molecular evolution, phylogenetics and phylogenomics
-
Tarraga, J., Medina, I., Arbiza, L., Huerta-Cepas, J., Gabaldon, T., Dopazo, J. et al. (2007) Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Res 35: W38-W42.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Tarraga, J.1
Medina, I.2
Arbiza, L.3
Huerta-Cepas, J.4
Gabaldon, T.5
Dopazo, J.6
-
25
-
-
40349084441
-
Ancient rapid radiations of insects: Challenges for phylogenetic analysis
-
Whitfield, J.B. and Kjer, K.M. (2008) Ancient rapid radiations of insects: challenges for phylogenetic analysis. Annu Rev Entomol 53: 449-472.
-
(2008)
Annu Rev Entomol
, vol.53
, pp. 449-472
-
-
Whitfield, J.B.1
Kjer, K.M.2
-
26
-
-
0027403024
-
Kelch encodes a component of intercellular bridges in Drosophila egg. chambers
-
Xue, F. and Cooley, L. (1993) kelch encodes a component of intercellular bridges in Drosophila egg chambers. Cell 72: 681-693.
-
(1993)
Cell
, vol.72
, pp. 681-693
-
-
Xue, F.1
Cooley, L.2
|