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Volumn 95, Issue C, 2010, Pages 175-188

Using computational modeling to understand microtubule dynamics: A primer for cell biologists

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; BIOLOGY; CHEMISTRY; CYTOLOGY; HUMAN; METABOLISM; METHODOLOGY; MICROTUBULE; MOLECULAR DYNAMICS; REVIEW; STATISTICS; THEORETICAL MODEL;

EID: 77955296286     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0091-679X(10)95010-3     Document Type: Book
Times cited : (4)

References (29)
  • 2
    • 0024785590 scopus 로고
    • A lateral cap model of microtubule dynamic instability
    • Bayley, P., Schilstra, M., and Martin, S. (1989). A lateral cap model of microtubule dynamic instability. FEBS Lett. 259, 181-184.
    • (1989) FEBS Lett , vol.259 , pp. 181-184
    • Bayley, P.1    Schilstra, M.2    Martin, S.3
  • 3
    • 0025103402 scopus 로고
    • Microtubule dynamic instability: Numerical simulation of microtubule transition properties using a Lateral Cap model
    • Bayley, P.M., Schilstra, M. J., and Martin, S. R. (1990). Microtubule dynamic instability: Numerical simulation of microtubule transition properties using a Lateral Cap model. J. Cell Sci. 95(Pt. 1), 33-48.
    • (1990) J. Cell Sci. , vol.95 , Issue.PT. 1 , pp. 33-48
    • Bayley, P.M.1    Schilstra, M.J.2    Martin, S.R.3
  • 4
    • 0012248353 scopus 로고
    • Monte Carlo study of the GTP cap in a five-start helix model of a microtubule
    • Chen, Y. D., and Hill, T. L. (1985). Monte Carlo study of the GTP cap in a five-start helix model of a microtubule. Proc. Natl. Acad. Sci. U.S.A. 82, 1131-1135.
    • (1985) Proc. Natl. Acad. Sci. U.S.A. , vol.82 , pp. 1131-1135
    • Chen, Y.D.1    Hill, T.L.2
  • 5
    • 68249159494 scopus 로고    scopus 로고
    • Modeling influenza epidemics and pandemics: Insights into the future of swine flu (H1N1)
    • Coburn, B. J., Wagner, B. G., and Blower, S. (2009). Modeling influenza epidemics and pandemics: Insights into the future of swine flu (H1N1). BMC Med. 7, 30.
    • (2009) BMC Med , vol.7 , pp. 30
    • Coburn, B.J.1    Wagner, B.G.2    Blower, S.3
  • 6
    • 1642580788 scopus 로고    scopus 로고
    • A meeting with Enrico Fermi
    • Dyson, F. (2004). A meeting with Enrico Fermi. Nature 427, 297.
    • (2004) Nature , vol.427 , pp. 297
    • Dyson, F.1
  • 7
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • Elowitz, M.B., and Leibler, S. (2000). A synthetic oscillatory network of transcriptional regulators. Nature 403, 335-338.
    • (2000) Nature , vol.403 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 8
    • 0029977264 scopus 로고    scopus 로고
    • Kinetics of self-assembling microtubules: An "inverse problem" in biochemistry
    • Flyvbjerg, H., Jobs, E., and Leibler, S. (1996). Kinetics of self-assembling microtubules: An "inverse problem" in biochemistry. Proc. Natl. Acad. Sci. U.S.A. 93, 5975-5979.
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 5975-5979
    • Flyvbjerg, H.1    Jobs, E.2    Leibler, S.3
  • 9
    • 84930070068 scopus 로고    scopus 로고
    • Analytical solution for steady-state populations in the self-assembly of microtubules from nucleating sites
    • Freed, K. F. (2002). Analytical solution for steady-state populations in the self-assembly of microtubules from nucleating sites. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 66, 061916.
    • (2002) Phys. Rev. E Stat. Nonlin. Soft Matter Phys. , vol.66 , pp. 061916
    • Freed, K.F.1
  • 10
    • 0027385963 scopus 로고
    • How the transition frequencies of microtubule dynamic instability (nucleation, catastrophe, and rescue) regulate microtubule dynamics in interphase and mitosis: analysis using a Monte Carlo computer simulation
    • Gliksman, N. R., Skibbens, R. V., and Salmon, E. D. (1993). How the transition frequencies of microtubule dynamic instability (nucleation, catastrophe, and rescue) regulate microtubule dynamics in interphase and mitosis: analysis using a Monte Carlo computer simulation. Mol. Biol. Cell 4, 1035-1050.
    • (1993) Mol. Biol. Cell , vol.4 , pp. 1035-1050
    • Gliksman, N.R.1    Skibbens, R.V.2    Salmon, E.D.3
  • 11
    • 33845720353 scopus 로고    scopus 로고
    • Insights into cytoskeletal behavior from computational modeling of dynamic microtubules in a cell-like environment
    • Gregoretti, I. V., Margolin, G., Alber, M. S., and Goodson, H. V. (2006). Insights into cytoskeletal behavior from computational modeling of dynamic microtubules in a cell-like environment. J. Cell Sci. 119, 4781-4788.
    • (2006) J. Cell Sci. , vol.119 , pp. 4781-4788
    • Gregoretti, I.V.1    Margolin, G.2    Alber, M.S.3    Goodson, H.V.4
  • 12
    • 0028241003 scopus 로고
    • Dynamic instability of microtubules as an efficient way to search in space
    • Holy, T. E., and Leibler, S. (1994). Dynamic instability of microtubules as an efficient way to search in space. Proc. Natl. Acad. Sci. U.S.A. 91, 5682-5685.
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 5682-5685
    • Holy, T.E.1    Leibler, S.2
  • 14
    • 68249152287 scopus 로고    scopus 로고
    • Mechanistic approaches to predicting oral drug absorption
    • Huang, W., Lee, S. L., and Yu, L.X. (2009). Mechanistic approaches to predicting oral drug absorption. AAPS J. 11, 217-224.
    • (2009) AAPS J , vol.11 , pp. 217-224
    • Huang, W.1    Lee, S.L.2    Yu, L.X.3
  • 15
    • 0016646230 scopus 로고
    • The equilibrium assembly of microtubules in vitro
    • Johnson, K. A., and Borisy, G. G. (1975). The equilibrium assembly of microtubules in vitro. Soc. Gen. Physiol. Ser. 30, 119-141.
    • (1975) Soc. Gen. Physiol. Ser. , vol.30 , pp. 119-141
    • Johnson, K.A.1    Borisy, G.G.2
  • 16
    • 0017670547 scopus 로고
    • Kinetic analysis of microtubule self-assembly in vitro
    • Johnson, K. A., and Borisy, G. G. (1977). Kinetic analysis of microtubule self-assembly in vitro. J. Mol. Biol. 117, 1-31.
    • (1977) J. Mol. Biol. , vol.117 , pp. 1-31
    • Johnson, K.A.1    Borisy, G.G.2
  • 17
    • 0018792113 scopus 로고
    • Thermodynamic analysis of microtubule self-assembly in vitro
    • Johnson, K. A., and Borisy, G. G. (1979). Thermodynamic analysis of microtubule self-assembly in vitro. J. Mol. Biol. 133, 199-216.
    • (1979) J. Mol. Biol. , vol.133 , pp. 199-216
    • Johnson, K.A.1    Borisy, G.G.2
  • 18
    • 0004154108 scopus 로고    scopus 로고
    • University of Washington Press, Seattle, WA
    • Lorenz, E. N. (1996). "The Essence of Chaos." University of Washington Press, Seattle, WA.
    • (1996) The Essence of Chaos
    • Lorenz, E.N.1
  • 20
    • 0027199079 scopus 로고
    • Dynamic instability of microtubules: Monte Carlo simulation and application to different types of microtubule lattice
    • Martin, S. R., Schilstra, M. J., and Bayley, P. M. (1993). Dynamic instability of microtubules: Monte Carlo simulation and application to different types of microtubule lattice. Biophys. J. 65, 578-596.
    • (1993) Biophys. J. , vol.65 , pp. 578-596
    • Martin, S.R.1    Schilstra, M.J.2    Bayley, P.M.3
  • 21
    • 0023610247 scopus 로고
    • Some thoughts on the partitioning of tubulin between monomer and polymer under conditions of dynamic instability
    • Mitchison, T. J., and Kirschner, M. W. (1987). Some thoughts on the partitioning of tubulin between monomer and polymer under conditions of dynamic instability. Cell Biophys. 11, 35-55.
    • (1987) Cell Biophys , vol.11 , pp. 35-55
    • Mitchison, T.J.1    Kirschner, M.W.2
  • 22
    • 0030994918 scopus 로고    scopus 로고
    • Estimation of the diffusion-limited rate of microtubule assembly
    • Odde, D. J. (1997). Estimation of the diffusion-limited rate of microtubule assembly. Biophys. J. 73, 88-96.
    • (1997) Biophys. J. , vol.73 , pp. 88-96
    • Odde, D.J.1
  • 24
    • 33947613349 scopus 로고
    • A theory of linear and helical aggregations of macromolecules
    • Oosawa, F., and Kasai, M. (1962). A theory of linear and helical aggregations of macromolecules. J. Mol. Biol. 4, 10-21.
    • (1962) J. Mol. Biol. , vol.4 , pp. 10-21
    • Oosawa, F.1    Kasai, M.2
  • 25
    • 0004237770 scopus 로고    scopus 로고
    • Saltelli, A., Chan, K., and Scott, E.M. (eds.). Wiley, Chichester
    • Saltelli, A., Chan, K., and Scott, E.M. (eds.) (2008). "Sensitivity Analysis." Wiley, Chichester.
    • (2008) Sensitivity Analysis
  • 26
    • 27744548870 scopus 로고    scopus 로고
    • Mechanochemical model of microtubule structure and self-assembly kinetics
    • VanBuren, V., Cassimeris, L., and Odde, D.J. (2005). Mechanochemical model of microtubule structure and self-assembly kinetics. Biophys. J. 89, 2911-2926.
    • (2005) Biophys. J. , vol.89 , pp. 2911-2926
    • VanBuren, V.1    Cassimeris, L.2    Odde, D.J.3
  • 27
    • 0037197966 scopus 로고    scopus 로고
    • Estimates of lateral and longitudinal bond energies within the microtubule lattice
    • VanBuren, V., Odde, D. J., and Cassimeris, L. (2002). Estimates of lateral and longitudinal bond energies within the microtubule lattice. Proc. Natl. Acad. Sci. U.S.A. 99, 6035-6040.
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 6035-6040
    • VanBuren, V.1    Odde, D.J.2    Cassimeris, L.3
  • 28
    • 0026775358 scopus 로고
    • Control of microtubule dynamics and length by cyclin A-and cyclin B-dependent kinases in Xenopus egg extracts
    • Verde, F., Dogterom, M., Stelzer, E., Karsenti, E., and Leibler, S. (1992). Control of microtubule dynamics and length by cyclin A-and cyclin B-dependent kinases in Xenopus egg extracts. J. Cell Biol. 118, 1097-1108.
    • (1992) J. Cell Biol. , vol.118 , pp. 1097-1108
    • Verde, F.1    Dogterom, M.2    Stelzer, E.3    Karsenti, E.4    Leibler, S.5
  • 29
    • 67651085457 scopus 로고    scopus 로고
    • The use of simulation for pediatric training and assessment
    • Weinberg, E. R., Auerbach, M. A., and Shah, N. B. (2009). The use of simulation for pediatric training and assessment. Curr. Opin. Pediatr. 21, 282-287.
    • (2009) Curr. Opin. Pediatr. , vol.21 , pp. 282-287
    • Weinberg, E.R.1    Auerbach, M.A.2    Shah, N.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.