Diversity of Frankia strains nodulating HippÖphae salicifolia D. Don using FAME profiling as chemotaxonomic markers

Journal of Basic Microbiology

Volumn 50, Issue 4, 2010, Pages 318-324

  Mishra, Arun Kumar ^a   Singh, Anju ^a   Singh, Satya Shila ^a  

^a BANARAS HINDU UNIVERSITY   (India)

Author keywords

Erucic acid; Fatty acids; Frankia strains; Taxonomy

Indexed keywords

FATTY ACID;

ARTICLE; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; FRANKIA; GENETICS; HIPPOPHAE RHAMNOIDES; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY; HIPPOPHAE;

CLUSTER ANALYSIS; FATTY ACIDS; FRANKIA; HIPPOPHAE; PHYLOGENY;

ALNUS; ALNUS GLUTINOSA; BRASSICA; BRASSICA SP.; COMPTONIA; FRANKIA; HIPPOPHAE RHAMNOIDES; HIPPOPHAE SALICIFOLIA;

EID: 77955261768     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.200900313     Document Type: Article

References (47)

1. Lavire, C. and Cournoyer, B., 2003. Progress on the genetics of the N2 fixing actinorhizal symbiont Frankia. Plant Soil, 254, 125-137.
2. Girgis, M.G.Z., Said, N.R. and Hazaa, M.M., 2002. Effective exploitation of Frankia-Casuarina symbiosis for afforestation of Egyptian deserts. I. Survey and evaluation of cellular and endophytic activities of native Frankia. Ann. Agric. Sci. 40, 279-295.
3. Shash, S.M., 2009a. Molecular analysis of phenotypic diversity among four Frankia isolated from Casuarina Nodules in Egypt. 1- Somaclonal variation among four Fran-kia isolates. Aust. J. Basic. Appl. Sci., 3, 529-535.
4. Shash, S.M., 2009b. Molecular analysis of phenotypic diversity among four Frankia isolated from Casuarina nodules in Egypt. 2-Molecular diversity among four Frankia isolates. Aust. J. Basic. Appl. Sci., 3, 536-542.
5. Baker, D.D. and Mullin, B.C., 1992. Actinorhizal symbioses. In: Stacy, G., Burris, R.H., Evans, H.J. (eds.), Biological Nitrogen Fixation. Chapman & Hall, New York, USA, pp. 259-292.
6. Sarma, H.K., Sharma, B.K., Singh, S.S., Tiwari, S.C. and Mishra, A.K., 2006. Polymorphic distribution and pheno-typic diversity of Frankia strains in nodule of Hippöphae salicifolia D. Don. Curr. Sci., 90, 1516-1521.
7. Lechevalier, M.P. and Lechevalier, H.A., 1990. Systematics, isolation and culture of Frankia. In: Schwintzer, C.R., Tjepkema, J.D. (eds.), The Biology of Frankia and Actino-rhizal Plants. Academic press, New York, USA, pp. 35-60.
8. Srivastava, A., Singh, A., Singh, S.S. and Mishra, A.K., 2008. Frankia-actinorhizal symbiosis: An overview. In: Gupta, R.K., Kumar, M., Vyas, D. (eds.), Soil Microflora. Daya Publishing House, India, pp. 86 -101.
9. Benson, D.R., Vanden Heuvel, B. and Potter, D., 2004. Actinorhizal symbiosis: Diversity and biogeography. In: Gillings, M., Holmes, A. (eds.), Plant Microbiology. BIOS Scientific Publishers, Oxford, pp. 97-127.
10. Normand, P., Queiroux, C., Tisa, L.S., Benson, D.R., Rouy, Z., Cruveiller, S. and Médigue, C., 2007. Exploring the genomes of Frankia. Physiol. Plant., 130, 331-343.
11. Hahn 2008. Polyphasic taxonomyof the genus Frankia. In: Pawloski, K., Newton, W.E. (eds.), Nitrogen Fixing Acti-norhizal Symbiosis. Springer, The Netherlands. pp 25- 47.
12. Singh, A., Mishra, A.K., Singh, S.S., Sarma, H.K. and Shukla, E., 2008. Influence of iron and chelator on siderophore production in Frankia strains nodulating Hip-pophae salicifolia D. Don. J. Basic. Microbiol., 48, 104 - 111.
13. Singh, S.S., Singh, A., Srivastava, A., Singh, P., Singh, A. and Mishra, A.K., 2009. Characterization of frankial strains isolated from HippÖphae salicifolia D. Don, based on physiological, SDS-PAGE of whole cell proteins and RAPD PCR analyses. W. J. Miicrobiol. Biotechnol., DOI: 10.1007/ s11274-009-0260-7.
14. Tunlid, A., Schultz, N.A., Benson, D.R., Steele, D.B. and White, D.C., 1989 Differences in fatty acid composition between vegetative cells and N2-fixing vesicles of Frankia sp. strain CpI1. Proc. Natl. Acad. Sci. USA, 86, 3394-3403.
15. Borowitzka, M.A., 1988. Fats, oils and hydrocarbons. In: Borowitzka, M.A., Borowitzka, L.J. (eds.), Mico-Algal Biotechnology. Cambridge University Press, Cambridge, London, pp. 257-287.
16. Vargas, M.A., Rodriguez, H., Moreno, J., Olivares, H., Del Campo, J.A. et al., 1998. Biochemical composition and fatty acid content of filamentous nitrogen-fixing cyanobacteria. J. Phycol., 34, 812- 817.
17. Rasoul-Amini, S., Ghasemi, Y., Morowvat, M.H. and Mo-hagheghzadeh, A., 2009. PCR amplification of 18S rRNA, single cell protein production and fatty acid evaluation of some naturally isolated microalgae. Food Chem., 116, 129-136.
18. Welch, D.F., 1991. Application of cellular fatty acid analysis. Clin. Microbiol. Rev., 4, 422-438.
19. Li, R. and Watanabe, M.M., 2004. Fatty acid composition of planktonic species of Anabaena (Cyanobacteria) with coiled trichomes exhibited a significant taxonomic value. Curr. Microbiol., 49, 376- 380.
20. Petkov, G. and Garcia, G., 2007. Which are fatty acids of the green alga Chlorella? Biochem. Syst. Ecol., 35, 281- 285.
21. Kenyon, C.N., 1972. Fatty acid composition of unicellular strains of blue-green algae. J. Bacteriol., 109, 827-834.
22. Murata, N., Wada, H. and Gombos, Z., 1992. Modes of fatty-acid desaturation in cyanobacteria. Plant Cell Physiol., 33, 933- 941.
23. Vandamme, P., Pot, B., Gillis, P., Do Vos, P., Kersters, K. et al., 1996. Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol. Rev., 60, 407-438.
24. Clawson, M.L., Bourret, A. and Benson, D.R., 2004. Assessing the phylogeny of Frankia-actinorhizal plant nitrogen-fixing root nodule symbioses with Frankia 16S rRNA and glutamine synthetase gene sequences. Mol. Phylogenet. Evol. 31, 131 -138.
25. Weber, A., Smolander A, Nurmiaho-Larsila, E. and Sund-man, V., 1988. Isolation and characterization of Frankia strains from Alnus incana and Alnus glutinosa in Finland. Symbiosis, 6, 97 - 116.
26. Baker, D.D., Pengelly, W.L. and Torrey, J.G., 1981. Immunochemical analysis of relationships among isolated Frankiae (Actinomycetales). Int. J. Syst. Bacteriol. 31, 148 -151.
27. Murry, M.A., Fontaine, M.S. and Torrey, J.G., 1984. Growth kinetics and nitrogenase induction in Frankia sp. HFPArI5 growth in batch culture. Plant Soil, 78, 61 -79.
28. Sasser, M., 1990. Identification of bacteria by gas chroma-tography of cellular fatty acids. MIDI Technical Note No. 101, MIDI, NEWARK, DE. May (Revised Feb 2001).
29. Baker, D.D. and Schwintzer, C.R., 1990. Introduction. In: Schwintzer, C.R., Tjepkema, J.D. (eds.), The Biology of Frankia and Actinorhizal Plants. Academic Press, San Diego, California, pp. 1- 13.
30. Lechevalier, M.P., 1994. Taxonomy of the Genus Frankia (Actinomycetales).Int. J. Syst. Bacteriol., 44, 1 -8.
31. Lechevalier, M.P., Labeda, D.P. and Ruan, J., 1987. Studies on Frankia sp. LLR 02022 from Casuarina cunninghamiana and its mutant LLR 02023. Physiol. Plant., 70, 249-254.
32. Mirza, M.S., Janse, J.D., Hahan, D. and Akkermans, A.D.L., 1991. Identification of atypical Frankia strains by fatty acid analysis. FEMS Microbiol. Lett., 83, 91-98.
33. Simon, L., Jabaji-Hare, S., Bousquet, J. and Lalonde, M., 1989. Confirmation of Frankia species using cellular fatty acids analysis. Syst Appl. Microbiol., 11, 229 -235.
34. Cohen, Z. and Vonshak, A., 1991. Fatty acid composition of Spirulina and Spirulina-like cyanobacteria in relation to their chemotaxonomy. Phytochem., 30, 205-206.
35. Caudales, R. and Wells, J.M., 1992. Differentiation of the free-living Anabaena and Nostoc cyanobacteria on the basis of fatty acid composition. Int. J. Syst. Bacteriol., 42, 246- 251.
36. Krüger, G.H.J., Wet, H.D., Kock, J.L.F. and Pieterse, A.J.H., 1995. Fatty acid composition as taxonomic characteristic for Microcystis and other coccoid cyanobacteria (blue-green alga) isolates. Hydrobiol., 308, 145-151.
37. Torrey, J.G. and Callahan, D., 1982. Structural features of the vesicle of Frankia sp. Cp11 in culture. Can. J. Bot., 28, 749-757.
38. Abeysekera, R.M., Newcomb, W., Silvester, W.B. and Torrey, J.G., 1989. A freeze-fracture electron microscopic study of Frankia in root nodules of Alnus incana grown at three oxygen tensions. Can. J. Microbiol., 36, 97-108.
39. Tjepkema, J.D., Ormerod, W. and Torrey, J.G., 1980. Vesicle formation and acetylene reduction (nitrogenase activity) in Frankia sp. Cp11 in culture. Can. J. Microbiol., 27, 815-823.
40. Benson, D.R. and Silvester, W.B., 1993. Biology of Frankia strains, actinomycete symbionts of actinorhizal plants. Microbiol. Rev., 57, 293-319.
41. Tighe, S.W., Lajudie, Pde., Dipietro, K., Lindstrom, K., Nick, G. et al., 2000. Analysis of cellular fatty acids and phenotypic relationships of Agrobacterium, Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium species using the Sherlock microbial identification system. Int. J. Syst. Evol. Microbiol., 50, 787- 801.
42. Kinsella, R.J., Fitzpatrick, D.A., Creevey, C.J. and Mclnerney, J.O., 2003. Fatty acid biosynthesis in Mycobacterium tuberculosis: Lateral gene transfer, adaptive evolution and gene duplication. Proc. Natl. Acad. Sci., 100, 10320- 10325.
43. Schluter, K., Futterer, J. and Potrykus, I., 1995. Horizontal gene transfer from a transgenic potato line to a bacterial pathogen (Erwinia chrysanthemi) occurs- if at all- at an extremely low frequency. Biotech., 13, 1094-1098.
44. Groisman, E.A. and Ochman, H., 1997. How salmonella became a pathogen. Trends Microbiol., 5, 343-349.
45. Ochman, H., Lawrence, J.G. and Groisman, E.A., 2000. Lateral gene transfer and nature of bacterial innovation. Nature, 405, 299-304.
46. Koonin, E.V., Makarova, K.S. and Aravind, L., 2001. Horizontal gene transfer in prokaryotes: Quantification and Classification. Ann. Rev. Microbiol., 55, 709 - 742.
47. Lalonde, M., Simon, L., Bousquet, J. and Seguin, A., 1988. Advances in the taxonomy of Frankia: recognition of species alni and elaeagni and novel subspecies pommerii and vandijkii,. In Bothe, H., DeBruijn, F.J., Newton, W.E. (eds.), Nitrogen Fixation: Hundred Years After. Gustav Fischer, New York, pp. 671-680.