-
1
-
-
26944466459
-
Mechanism of membrane fusion by viral envelope proteins
-
DOI 10.1016/S0065-3527(05)64007-9, PII S0065352705640079, Virus Structure and Assembly
-
Harrison, S. C. 2005. Mechanism of membrane fusion by viral envelope proteins. Adv. Virus Res. 64: 231-261. (Pubitemid 43574760)
-
(2005)
Advances in Virus Research
, vol.64
, pp. 231-261
-
-
Harrison, S.C.1
-
2
-
-
11144348130
-
A structural perspective of the Flavivirus life cycle
-
DOI 10.1038/nrmicro1067
-
Mukhopadhyay, S., R. J. Kuhn, and M. G. Rossmann. 2005. A structural perspective of the flavivirus life cycle. Nat. Rev. Microbiol. 3: 13-22. (Pubitemid 40028466)
-
(2005)
Nature Reviews Microbiology
, vol.3
, Issue.1
, pp. 13-22
-
-
Mukhopadhyay, S.1
Kuhn, R.J.2
Rossmann, M.G.3
-
3
-
-
0029795282
-
Structural requirements for low-pH-induced rearrangements in the envelope glycoprotein of tick-borne encephalitis virus
-
Stiasny, K., S. L. Allison, ..., F. X. Heinz. 1996. Structural requirements for low-pH-induced rearrangements in the envelope glycoprotein of tick-borne encephalitis virus. J. Virol. 70: 8142-8147. (Pubitemid 26339127)
-
(1996)
Journal of Virology
, vol.70
, Issue.11
, pp. 8142-8147
-
-
Stiasny, K.1
Allison, S.L.2
Marchler-Bauer, A.3
Kunz, C.4
Heinz, F.X.5
-
4
-
-
50049120491
-
Closing the door on flaviviruses: Entry as a target for antiviral drug design
-
Perera, R., M. Khaliq, and R. J. Kuhn. 2008. Closing the door on flaviviruses: entry as a target for antiviral drug design. Antiviral Res. 80: 11-22.
-
(2008)
Antiviral Res.
, vol.80
, pp. 11-22
-
-
Perera, R.1
Khaliq, M.2
Kuhn, R.J.3
-
5
-
-
0034903691
-
Role of metastability and acidic pH in membrane fusion by tick-borne encephalitis virus
-
DOI 10.1128/JVI.75.16.7392-7398.2001
-
Stiasny, K., S. L. Allison.....F. X. Heinz. 2001. Role of metastability and acidic pH in membrane fusion by tick-borne encephalitis virus. J. Virol. 75: 7392-7398. (Pubitemid 32737997)
-
(2001)
Journal of Virology
, vol.75
, Issue.16
, pp. 7392-7398
-
-
Stiasny, K.1
Allison, S.L.2
Mandl, C.W.3
Heinz, F.X.4
-
6
-
-
33847246763
-
Characterization of a structural intermediate of flavivirus membrane fusion
-
Stiasny, K., C. Kössl, ..., F. X. Heinz. 2007. Characterization of a structural intermediate of flavivirus membrane fusion. PLoS Pathog. 3: e20.
-
(2007)
PLoS Pathog.
, vol.3
-
-
Stiasny, K.1
Kössl, C.2
Heinz, F.X.3
-
7
-
-
55949108725
-
Identification of specific histidines as pH sensors in flavivirus membrane fusion
-
Fritz, R., K. Stiasny, and F. X. Heinz. 2008. Identification of specific histidines as pH sensors in flavivirus membrane fusion. J. Cell Biol. 183: 353-361.
-
(2008)
J. Cell Biol.
, vol.183
, pp. 353-361
-
-
Fritz, R.1
Stiasny, K.2
Heinz, F.X.3
-
8
-
-
55949125587
-
The pH sensor for flavivirus membrane fusion
-
Harrison, S. C. 2008. The pH sensor for flavivirus membrane fusion. J. Cell Biol. 183: 177-179.
-
(2008)
J. Cell Biol.
, vol.183
, pp. 177-179
-
-
Harrison, S.C.1
-
9
-
-
0037495036
-
A ligand-binding pocket in the dengue virus envelope glycoprotein
-
DOI 10.1073/pnas.0832193100
-
Modis, Y., S. Ogata, ..., S. C. Harrison. 2003. A ligand-binding pocket in the dengue virus envelope glycoprotein. Proc. Natl. Acad. Sci. USA. 100: 6986-6991. (Pubitemid 36706380)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.12
, pp. 6986-6991
-
-
Modis, Y.1
Ogata, S.2
Clements, D.3
Harrison, S.C.4
-
10
-
-
1642499388
-
Structure of the dengue virus envelope protein after membrane fusion
-
DOI 10.1038/nature02165
-
Modis, Y., S. Ogata, ..., S. C. Harrison. 2004. Structure of the dengue virus envelope protein after membrane fusion. Nature. 427: 313-319. (Pubitemid 38133652)
-
(2004)
Nature
, vol.427
, Issue.6972
, pp. 313-319
-
-
Modis, Y.1
Ogata, S.2
Clements, D.3
Harrison, S.C.4
-
11
-
-
41349112304
-
Structure of the immature dengue virus at low pH primes proteolytic maturation
-
Yu, I. M., W. Zhang, ..., J. Chen. 2008. Structure of the immature dengue virus at low pH primes proteolytic maturation, Science. 319: 1834-1837.
-
(2008)
Science
, vol.319
, pp. 1834-1837
-
-
Yu, I.M.1
Zhang, W.2
Chen, J.3
-
12
-
-
33749266195
-
The role of histidine residues in low-pH-mediated viral membrane fusion
-
DOI 10.1016/j.str.2006.07.011, PII S096921260600356X
-
Kampmann, T., D. S. Mueller, ..., B. Kobe. 2006. The role of histidine residues in low-pH-mediated viral membrane fusion. Structure. 14: 1481-1487. (Pubitemid 44486813)
-
(2006)
Structure
, vol.14
, Issue.10
, pp. 1481-1487
-
-
Kampmann, T.1
Mueller, D.S.2
Mark, A.E.3
Young, P.R.4
Kobe, B.5
-
13
-
-
39449133035
-
Histidine protonation and the activation of viral fusion proteins
-
Mueller, D. S., T. Kampmann, ..., A. E. Mark. 2008. Histidine protonation and the activation of viral fusion proteins. Biochem. Soc. Trans. 36: 43-4-5.
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 43-45
-
-
Mueller, D.S.1
Kampmann, T.2
Mark, A.E.3
-
14
-
-
0036424048
-
Transition path sampling: Throwing ropes over rough mountain passes, in the dark
-
Bolhuis, P. G., D. Chandler, ..., P. L. Geissler. 2002. Transition path sampling: throwing ropes over rough mountain passes, in the dark. Annu. Rev. Phys. Chem. 53: 291-318.
-
(2002)
Annu. Rev. Phys. Chem.
, vol.53
, pp. 291-318
-
-
Bolhuis, P.G.1
Chandler, D.2
Geissler, P.L.3
-
15
-
-
0002174423
-
Computational molecular dynamics: Challenges, methods and ideas
-
P. Denflhard, J. Hermans, B. Leimkuhler, A. Mark, R. Skeel, and S. Reich, editors. SpringerVerlag, Berlin
-
Izrailev, S., S. Stepaniants, ..., K. Schulten. 1998. Computational molecular dynamics: challenges, methods and ideas. In Lecture Notes in Computational Science and Engineering 4. P. Denflhard, J. Hermans, B. Leimkuhler, A. Mark, R. Skeel, and S. Reich, editors. SpringerVerlag, Berlin.
-
(1998)
Lecture Notes in Computational Science and Engineering
, vol.4
-
-
Izrailev, S.1
Stepaniants, S.2
Schulten, K.3
-
16
-
-
0001616080
-
Replica-exchange molecular dynamics method for protein folding
-
PII S0009261499011239
-
Sugita, Y., and Y. Okamoto. 1999. Replica-exchange molecular dynamics method for protein folding. Chem. Phys. Lett. 314: 141-151. (Pubitemid 129556751)
-
(1999)
Chemical Physics Letters
, vol.314
, Issue.1-2
, pp. 141-151
-
-
Sugita, Y.1
Okamoto, Y.2
-
17
-
-
0035935802
-
Assessing the efficiency of free energy calculation methods
-
Darve, E., and A. Pohorille. 2001. Assessing the efficiency of free energy calculation methods. J. Chem. Phys. 115: 9169-9183.
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 9169-9183
-
-
Darve, E.1
Pohorille, A.2
-
20
-
-
69349100797
-
PLUMED: A portable plugin for free-energy calculations with molecular dynamics
-
Bonomi, M., D. Branduardi, ..., M. Parrinello. 2009. PLUMED: A portable plugin for free-energy calculations with molecular dynamics. Comp. Phys. Comm. 180: 1961-1972.
-
(2009)
Comp. Phys. Comm.
, vol.180
, pp. 1961-1972
-
-
Bonomi, M.1
Branduardi, D.2
Parrinello, M.3
-
21
-
-
33644682649
-
Metadynamics simulation of prion protein: β-structure stability and the early stages of misfolding
-
DOI 10.1021/ja057076l
-
Barducci, A., R. Chelli, ..., M. Parrinello. 2006. Metadynamics simulation of prion protein: β-structure stability and the early stages of misfolding. J. Am. Chem. Soc. 128: 2705-2710. (Pubitemid 43328887)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.8
, pp. 2705-2710
-
-
Barducci, A.1
Chelli, R.2
Procacci, P.3
Schettino, V.4
Gervasio, F.L.5
Parrinello, M.6
-
24
-
-
1842526097
-
Structure of a flavivirus envelope glycoprotein in its low-pH-induced membrane fusion conformation
-
DOI 10.1038/sj.emboj.7600064
-
Bressanelli, S., K. Stiasny, ..., F. A. Rey. 2004. Structure of a flavivirus envelope glycoprotein in its low-pH-induced membrane fusion conformation. EMBO J. 23: 728-738. (Pubitemid 38425440)
-
(2004)
EMBO Journal
, vol.23
, Issue.4
, pp. 728-738
-
-
Bressanelli, S.1
Stiasny, K.2
Allison, S.L.3
Stura, E.A.4
Duquerroy, S.5
Lescar, J.6
Heinz, F.X.7
Rey, F.A.8
-
25
-
-
33747863016
-
ArchPRED: A template based loop structure prediction server
-
Fernandez-Fuentes, N., J. Zhai, and A. Fiser. 2006. ArchPRED: a template based loop structure prediction server. Nucleic Acids Res. 34: W173-W176.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Fernandez-Fuentes, N.1
Zhai, J.2
Fiser, A.3
-
26
-
-
34547592557
-
MolProbity: All-atom contacts and structure validation for proteins and nucleic acids
-
Davis, I. W., A. Leaver-Fay, ..., D. C. Richardson, 2007. MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res. 35: W375-W383.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Richardson, D.C.3
-
28
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
DOI 10.1002/prot.21123
-
Hornak, V., R. Abel, ..., C. Simmerling. 2006. Comparison of multiple AMBER force fields and development of improved protein backbone parameters. Proteins. 65: 712-725. (Pubitemid 44583220)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.3
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
29
-
-
33644772083
-
Equilibrium free energies from nonequilibrium metadynamics
-
Bussi, G., A. Laio, and M. Parrinello. 2006. Equilibrium free energies from nonequilibrium metadynamics. Phys. Rev. Lett. 96: 090601.
-
(2006)
Phys. Rev. Lett.
, vol.96
, pp. 090601
-
-
Bussi, G.1
Laio, A.2
Parrinello, M.3
-
31
-
-
58149299971
-
Metadynamics: A method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science
-
Laio, A., and F. L. Gervasio. 2008. Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science. Rep. Prog. Phys. 71: 126601.
-
(2008)
Rep. Prog. Phys.
, vol.71
, pp. 126601
-
-
Laio, A.1
Gervasio, F.L.2
-
32
-
-
40949161794
-
Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins
-
Lok, S. M., V. Kostyuchenko, ..., M. G. Rossmann. 2008. Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins. Nat. Struct. Mol. Biol. 15: 312-317.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 312-317
-
-
Lok, S.M.1
Kostyuchenko, V.2
Rossmann, M.G.3
-
34
-
-
0001528720
-
Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules
-
Fraczkiewicz, R., and W. Braun. 1998. Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules. J. Comput. Chem. 19: 319-333. (Pubitemid 128592649)
-
(1998)
Journal of Computational Chemistry
, vol.19
, Issue.3
, pp. 319-333
-
-
Fraczkiewicz, R.1
Braun, W.2
-
35
-
-
67349274176
-
Identification of novel target sites and an inhibitor of the dengue virus e protein
-
Yennamalli, R., N. Subbarao, ..., B. Kobe. 2009. Identification of novel target sites and an inhibitor of the dengue virus E protein. J. Comput. Aided Mol. Des. 23: 333-341.
-
(2009)
J. Comput. Aided Mol. Des.
, vol.23
, pp. 333-341
-
-
Yennamalli, R.1
Subbarao, N.2
Kobe, B.3
|