A multispecies age-structured assessment model for the Gulf of Alaska

Canadian Journal of Fisheries and Aquatic Sciences

Volumn 67, Issue 7, 2010, Pages 1135-1148

  van Kirk, Kray F ^a   Quinn II, Terrance J ^a   Collie, Jeremy S ^b  

^a UNIVERSITY OF ALASKA FAIRBANKS   (United States)

^b UNIVERSITY OF RHODE ISLAND   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGE STRUCTURE; GADOID; MARINE ECOSYSTEM; MORTALITY; POPULATION MODELING; POPULATION REGULATION; POPULATION SIZE; PREDATION; PREDATOR; PREY AVAILABILITY;

GULF OF ALASKA; PACIFIC OCEAN;

GADUS MACROCEPHALUS; PLEURONECTOIDEI; POLLACHIUS; REINHARDTIUS STOMIAS; THERAGRA CHALCOGRAMMA;

EID: 77955133842     PISSN: 0706652X     EISSN: None     Source Type: Journal    
DOI: 10.1139/F10-053     Document Type: Article

References (38)

1. Andersen, K.P., and Ursin, E. 1977. A multispecies extension to the Beverton and Holt theory of fishing, with accounts of phosphorus circulation and primary productivity. Meddr. Danm. Fisk. Havunders. (N.S.), 7: 319-435.
2. Aydin, K., Gaichas, S., Ortiz, I., Kinzey, D., and Friday, N. 2005. A comparison of the Bering Sea, Gulf of Alaska, and Aleutian Islands large marine ecosystems through food web modeling. NOAA Tech. Memo. No. NMFS-AFSC-130.
3. Burnham, K.P., and Anderson, D.R. 2002. Model selection and multimodel inference. 2nd ed. Springer-Verlag, New York.
4. Christensen, V., Walters, C.J., and Pauly, D. 2000. Ecopath with Eco-sim - a user's guide. The University of British Columbia, Fisheries Centre, Vancouver, Canada, and ICLARM, Penang, Malaysia.
5. Collie, J.S., and Gislason, H. 2001. Biological reference points for fish stocks in a multispecies context. Can. J. Fish. Aquat. Sci. 58(11): 2167-2176. doi:10.1139/cjfas-58-11-2167.
6. Dorn, M., Aydin, K., Barbeaux, S., Guttormsen, M., Megrey, B., Spalinger, K., and Wilkins, M. 2005. Assessment of walleye pollock in the Gulf of Alaska. In Stock Assessment and Fishery Evaluation Report for the Groundfish Resources for the Gulf of Alaska. North Pacific Fishery Management Council, 605 W. 4th Ave., Suite 306, Anchorage, AK. pp. 41-153.
7. Dorn, M., Aydin, K., Barbeaux, S., Guttormsen, M., Megrey, B., Spalinger, K., and Wilkins, M. 2008. Assessment of walleye pollock in the Gulf of Alaska. In Stock Assessment and Fishery Evaluation Report for the Groundfish Resources for the Gulf of Alaska. North Pacific Fishery Management Council, 605 W. 4th Ave., Suite 306, Anchorage, AK. pp. 53-167.
8. Essington, T.E., Kitchell, J.F., and Walters, C.J. 2001. The von Bertalanffy growth function, bioenergetics, and the consumption rates of fish. Can. J. Fish. Aquat. Sci. 58(11): 2129-2138. doi:10.1139/cjfas-58-11-2129.
9. Fournier, D.A., and Archibald, C.P. 1982. A general theory for analyzing catch at age data. Can. J. Fish. Aquat. Sci. 39(8): 1195-1207. doi:10.1139/f82-157.
10. Fu, C., Quinn, T.J., II, and Shirley, T.C. 2001. The role of sex change, growth and mortality in Pandalus population dynamics and management. ICES J. Mar. Sci. 58(3): 607-621. doi:10.1006/jmsc.2001.1050.
11. Hanselman, D., Shotwell, S.K., Heifetz, J., Fujioka, J.T., and Ianelli, J. 2008. Assessment of Pacific ocean perch in the Gulf of Alaska. In Stock Assessment and Fishery Evaluation Report for the Groundfish Resources for the Gulf of Alaska. North Pacific Fishery Management Council, 605 W. 4th Ave., Suite 306, An-chorage, AK. pp. 433-444.
12. Helgason, T., and Gislason, H. 1979. VPA-analysis with species interaction due to predation. ICES CM 1979/G:52.
13. Holling, C.S. 1959. The components of predation as revealed by a study of small predation of the European pine sawfly. Can. Ent. 91: 293-320.
14. Hollowed, A.B., Bax, N., Beamish, R., Collie, J., Fogarty, M., Livingston, P., Pope, J., and Rice, J. 2000a. Are multispecies models an improvement on single-species models for measuring fishing impacts on marine ecosystems? ICES J. Mar. Sci. 57(3): 707-719. doi:10.1006/jmsc.2000.0734.
15. Hollowed, A.B., Ianelli, J.N., and Livingston, P. 2000b. Including predation mortality in stock assessments: a case study for Gulf of Alaska walleye pollock. ICES J. Mar. Sci. 57(2): 279-293. doi:10.1006/jmsc.1999.0637.
16. Jurado-Molina, J., Livingston, P., and Ianelli, J.N. 2005. Incorporating predation interactions to a statistical catch-at-age model for a predatorprey system in the eastern Bering Sea. Can. J. Fish. Aquat. Sci. 62(8): 1865-1873. doi:10.1139/f05-110.
17. Kinzey, D., and Punt, A.E. 2009. Multispecies and single-species models of fish population dynamics: comparing parameter estimates. Nat. Resour. Model. 22: 67-104.
18. Lewy, P., and Vinther, M. 2004. A stochastic age-length-structured multispecies model applied to North Sea stocks. ICES CM 2004/FF:20.
19. Link, J.S. 2002. Ecological considerations in fisheries management: when does it matter? Fisheries, 27(4): 10-17. doi:10.1577/1548-8446(2002)027<0010:ECIFM>2.0.CO;2.
20. Livingston, P.A. 1993. Importance of predation by groundfish, marine mammals, and birds on walleye pollock, Theregra cholco-gramma, and Pacific herring, Clupea pallasi, in the eastern Bering Sea. Mar. Ecol. Prog. Ser. 102: 205-215. doi:10.3354/meps102205.
21. Livingston, P.A., and Jurado-Molina, J. 2000. A multispecies virtual population analysis of the eastern Bering Sea. ICES J. Mar. Sci. 57(2): 294-299. doi:10.1006/jmsc.1999.0524.
22. Livingston, P.A., and Methot, R. 1998. Incorporation of predation into a population assessment model of eastern Bering Sea walleye pollock. In Fishery stock assessment models. Alaska Sea Grant College Program, Fairbanks, Alaska. pp. 663-678.
23. Magnusson, K.G. 1995. An overview of the multispecies VPA - theory and applications. Rev. Fish Biol. Fish. 5(2): 195-212.
24. Marasco, R.J., Goodman, D., Grimes, C.B., Lawson, P.W., Punt, A.E., and Quinn, T.J., II. 2007. Ecosystem-based fisheries management: some practical suggestions. Can. J. Fish. Aquat. Sci. 64(6): 928-939. doi:10.1139/F07-062.
25. Merritt, M.F., and Quinn, T.J., II. 2000. Using perceptions of data accuracy and empirical weightings of information: assessment of a recreational fish population. Can. J. Fish. Aquat. Sci. 57(7): 1459-1469. doi:10.1139/cjfas-57-7-1459.
26. Moustahfid, H., Link, J.S., Overholtz, W.J., and Tyrrell, M.C. 2009. The advantage of explicitly incorporating predation mortality into age-structured stock assessment models: an application for Atlantic mackerel. ICES J. Mar. Sci. 66(3): 445-454. doi:10.1093/icesjms/fsn217.
27. Otter Research Ltd. 2004. An introduction to AD Model Builder for use in nonlinear modeling and statistics. Version 7.0.1. Otter Research Ltd., Sidney, British Columbia.
28. Plagányi, É.E. 2007. Models for an ecosystem approach to fisheries. FAO Tech Pap. No. 477, FAO, Rome, Italy.
29. Pope, J. 1979. A modified cohort analysis in which constant natural mortality is replaced by estimates of predation levels. ICES CM 1979/H:16.
30. Pope, J. 1991. The ICES Multispecies Assessment Working Group: evolution, insights, and future problems. ICES Mar. Sci. Symp. 193: 22-33.
31. Quinn, T.J., II, and Deriso, R.B. 1999. Quantitative fish dynamics. Oxford University Press, New York.
32. Sainsbury, K. 1998. Living marine resource assessment for the 21st century: what will be needed and how will it be provided? In Fishery stock assessment models. Alaska Sea Grant College Program, Fairbanks, Alaska. pp. 1-40.
33. Sparre, P. 1980. A goal function of fisheries (Legion Analysis). ICES CM 1980/G:40.
34. Thompson, G.G., and Dorn, M. 2005. Assessment of Pacific cod in the Gulf of Alaska. In Stock Assessment and Fishery Evaluation Report for the Groundfish Resources for the Gulf of Alaska. North Pacific Fishery Management Council, 605 W. 4th Ave., Suite 306, Anchorage, AK. pp. 155-244.
35. Thompson, G.G., and Ianelli, J., and Dorn, M. 2008. Assessment of Pacific cod in the Gulf of Alaska. In Stock Assessment and Fishery Evaluation Report for the Groundfish Resources for the Gulf of Alaska. North Pacific Fishery Management Council, 605 W. 4th Ave., Suite 306, Anchorage, AK, pp. 169-301.
36. Tsou, T.S., and Collie, J.S. 2001. Estimating predation mortality in the Georges Bank fish community. Can. J. Fish. Aquat. Sci. 58(5): 908-922. doi:10.1139/cjfas-58-5-908.
37. Turnock, B.K., and Wilderbuer, T.K. 2007. Assessment of arrow-tooth flounder in the Gulf of Alaska. In Stock Assessment and Fishery Evaluation Report for the Groundfish Resources for the Gulf of Alaska. North Pacific Fishery Management Council, 605 W. 4th Ave., Suite 306, Anchorage, AK. pp. 451-504.
38. Turnock, B.K., Wilderbuer, T.K., and Brown, E.S. 2005. Assessment of arrowtooth flounder in the Gulf of Alaska. In Stock Assessment and Fishery Evaluation Report for the Groundfish Resources for the Gulf of Alaska. North Pacific Fishery Management Council, 605 W. 4th Ave., Suite 306, Anchorage, AK. pp. 435-472.