-
1
-
-
4744368323
-
Carbohydrate-binding modules: Fine-tuning polysaccharide recognition
-
10.1042/BJ20040892. 15214846
-
Carbohydrate-binding modules: fine-tuning polysaccharide recognition. AB Boraston DN Bolam HJ Gilbert GJ Davies, Biochem J 2004 382 769 81 10.1042/BJ20040892 15214846
-
(2004)
Biochem J
, vol.382
, pp. 769-81
-
-
Boraston, A.B.1
Bolam, D.N.2
Gilbert, H.J.3
Davies, G.J.4
-
3
-
-
33847317012
-
Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network
-
10.1186/1472-6807-7-1. 17201922
-
Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network. A Malik S Ahmad, BMC Struct Biol 2007 7 1 10.1186/1472-6807-7-1 17201922
-
(2007)
BMC Struct Biol
, vol.7
, pp. 1
-
-
Malik, A.1
Ahmad, S.2
-
4
-
-
1042264059
-
Searching for functional sites in protein structures
-
10.1016/j.cbpa.2003.11.001. 15036149
-
Searching for functional sites in protein structures. S Jones JM Thornton, Curr Opin Chem Biol 2004 8 3 7 10.1016/j.cbpa.2003.11.001 15036149
-
(2004)
Curr Opin Chem Biol
, vol.8
, pp. 3-7
-
-
Jones, S.1
Thornton, J.M.2
-
5
-
-
33748976313
-
Understanding the cell in terms of structure and function: Insights from structural genomics
-
10.1016/j.copbio.2006.07.004. 16890423
-
Understanding the cell in terms of structure and function: insights from structural genomics. DJ Rigden, Curr Opin Biotechnol 2006 17 457 64 10.1016/j.copbio.2006.07.004 16890423
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 457-64
-
-
Rigden, D.J.1
-
6
-
-
0034057552
-
Analysis and prediction of carbohydrate binding sites
-
10.1093/protein/13.2.89. 10708647
-
Analysis and prediction of carbohydrate binding sites. C Taroni S Jones JM Thornton, Protein Eng 2000 13 89 98 10.1093/protein/13.2.89 10708647
-
(2000)
Protein Eng
, vol.13
, pp. 89-98
-
-
Taroni, C.1
Jones, S.2
Thornton, J.M.3
-
7
-
-
0042880971
-
An empirical approach for structure-based prediction of carbohydrate-binding sites on proteins
-
10.1093/protein/gzg065. 12915724
-
An empirical approach for structure-based prediction of carbohydrate-binding sites on proteins. C Shionyu-Mitsuyama T Shirai H Ishida T Yamane, Protein Eng 2003 16 467 78 10.1093/protein/gzg065 12915724
-
(2003)
Protein Eng
, vol.16
, pp. 467-78
-
-
Shionyu-Mitsuyama, C.1
Shirai, T.2
Ishida, H.3
Yamane, T.4
-
8
-
-
70349501722
-
InCa-SiteFinder: A method for structure-based prediction of inositol and carbohydrate binding sites on proteins
-
10.1016/j.jmgm.2009.08.009. 19762259
-
InCa-SiteFinder: A method for structure-based prediction of inositol and carbohydrate binding sites on proteins. M Kulharia SJ Bridgett RS Goody RM Jackson. J Mol Graph Model 2009 28 297 303 10.1016/j.jmgm.2009.08.009 19762259
-
(2009)
J Mol Graph Model
, vol.28
, pp. 297-303
-
-
Kulharia, M.1
Bridgett, S.J.2
Goody, R.S.3
Jackson, R.M.4
-
9
-
-
33745161547
-
Carbohydrate binding modules: Biochemical properties and novel applications
-
10.1128/MMBR.00028-05. 16760304
-
Carbohydrate binding modules: biochemical properties and novel applications. O Shoseyov Z Shani I Levy, Microbiol Mol Biol Rev 2006 70 283 95 10.1128/MMBR.00028-05 16760304
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, pp. 283-95
-
-
Shoseyov, O.1
Shani, Z.2
Levy, I.3
-
11
-
-
70349307195
-
Prediction of protein-glucose binding sites using support vector machines
-
10.1002/prot.22424. 19415755
-
Prediction of protein-glucose binding sites using support vector machines. H Nassif H Al-Ali S Khuri W Keirouz, Proteins 2009 77 121 32 10.1002/prot.22424 19415755
-
(2009)
Proteins
, vol.77
, pp. 121-32
-
-
Nassif, H.1
Al-Ali, H.2
Khuri, S.3
Keirouz, W.4
-
12
-
-
55549090031
-
Carbohydrate-pi interactions: What are they worth?
-
10.1021/ja803960x. 18844354
-
Carbohydrate-pi interactions: what are they worth? ZR Laughrey SE Kiehna AJ Riemen ML Waters, J Am Chem Soc 2008 130 14625 33 10.1021/ja803960x 18844354
-
(2008)
J Am Chem Soc
, vol.130
, pp. 14625-33
-
-
Laughrey, Z.R.1
Kiehna, S.E.2
Riemen, A.J.3
Waters, M.L.4
-
13
-
-
53849089283
-
Aromatic-carbohydrate interactions: An NMR and computational study of model systems
-
10.1002/chem.200800247. 18481803
-
Aromatic-carbohydrate interactions: an NMR and computational study of model systems. S Vandenbussche D Díaz MC Fernndez-Alonso W Pan SP Vincent G Cuevas FJ Cãada J Jiménez-Barbero K Bartik, Chemistry 2008 14 7570 8 10.1002/chem.200800247 18481803
-
(2008)
Chemistry
, vol.14
, pp. 7570-8
-
-
Vandenbussche, S.1
Díaz, D.2
Fernndez-Alonso, M.C.3
Pan, W.4
Vincent, S.P.5
Cuevas, G.6
Cãada, F.J.7
Jiménez-Barbero, J.8
Bartik, K.9
-
14
-
-
0029849212
-
Probing the role of tryptophan residues in a cellulose-binding domain by chemical modification
-
10.1002/pro.5560051117. 8931149
-
Probing the role of tryptophan residues in a cellulose-binding domain by chemical modification. MR Bray PE Johnson NR Gilkes LP McIntosh DG Kilburn RA Warren, Protein Sci 1996 5 2311 2318 10.1002/pro.5560051117 8931149
-
(1996)
Protein Sci
, vol.5
, pp. 2311-2318
-
-
Bray, M.R.1
Johnson, P.E.2
Gilkes, N.R.3
McIntosh, L.P.4
Kilburn, D.G.5
Warren, R.A.6
-
15
-
-
0034493730
-
Analysis of binding of the family 2a carbohydrate-binding module from Cellulomonas fimi xylanase 10a to cellulose: Specificity and identification of functionally important amino acid residues
-
10.1093/protein/13.11.801. 11161112
-
Analysis of binding of the family 2a carbohydrate-binding module from Cellulomonas fimi xylanase 10a to cellulose: specificity and identification of functionally important amino acid residues. BW McLean MR Bray AB Boraston NR Gilkes CA Haynes DG Kilburn, Protein Eng 2000 13 801 809 10.1093/protein/13.11. 801 11161112
-
(2000)
Protein Eng
, vol.13
, pp. 801-809
-
-
McLean, B.W.1
Bray, M.R.2
Boraston, A.B.3
Gilkes, N.R.4
Haynes, C.A.5
Kilburn, D.G.6
-
16
-
-
0035798612
-
Roles of the exposed aromatic residues in crystalline chitin hydrolysis by chitinase A from Serratia marascens 2170
-
10.1074/jbc.M103610200. 11522778
-
Roles of the exposed aromatic residues in crystalline chitin hydrolysis by chitinase A from Serratia marascens 2170. T Uchiyama F Katouno N Nikaidou T Nonaka J Sugiyama T Watanabe, J Biol Chem 2001 276 41343 41349 10.1074/jbc.M103610200 11522778
-
(2001)
J Biol Chem
, vol.276
, pp. 41343-41349
-
-
Uchiyama, T.1
Katouno, F.2
Nikaidou, N.3
Nonaka, T.4
Sugiyama, J.5
Watanabe, T.6
-
17
-
-
0037457955
-
The binding specificity and affinity determinants of family 1 and family 3 cellulose binding modules
-
10.1073/pnas.212651999. 12522267
-
The binding specificity and affinity determinants of family 1 and family 3 cellulose binding modules. J Lehtio J Sugiyama M Gustavsson L Fransson M Linder TT Teeri, Proc Natl Acad Sci USA 2003 100 484 489 10.1073/pnas.212651999 12522267
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 484-489
-
-
Lehtio, J.1
Sugiyama, J.2
Gustavsson, M.3
Fransson, L.4
Linder, M.5
Teeri, T.T.6
-
18
-
-
0031194325
-
Purification and characterization of tobacco pathogenesis-related protein PR-5d, an antifungal thaumatin-like protein
-
9297844
-
Purification and characterization of tobacco pathogenesis-related protein PR-5d, an antifungal thaumatin-like protein. H Koiwa H Kato T Nakatsu J Oda Y Yamada F Sato, Plant Cell Physiol 1997 38 783 91 9297844
-
(1997)
Plant Cell Physiol
, vol.38
, pp. 783-91
-
-
Koiwa, H.1
Kato, H.2
Nakatsu, T.3
Oda, J.4
Yamada, Y.5
Sato, F.6
-
21
-
-
0033180204
-
Some thaumatin-like proteins hydrolyse polymeric beta-1,3-glucans
-
10.1046/j.1365-313X.1999.00551.x. 10504569
-
Some thaumatin-like proteins hydrolyse polymeric beta-1,3-glucans. J Grenier C Potvin J Trudel A Asselin, Plant J 1999 19 473 80 10.1046/j.1365-313X. 1999.00551.x 10504569
-
(1999)
Plant J
, vol.19
, pp. 473-80
-
-
Grenier, J.1
Potvin, C.2
Trudel, J.3
Asselin, A.4
-
22
-
-
0034832178
-
Binding interactions between barley thaumatin-like proteins and (1,3)-beta-D-glucans: Kinetics, specificity, structural analysis and biological implications
-
Binding interactions between barley thaumatin-like proteins and (1,3)-beta-D-glucans: Kinetics, specificity, structural analysis and biological implications. RIW Osmond M Hrmova F Fontaine A Imberty GB Fincher, FEBS Journal 2001 268 4190 4199
-
(2001)
FEBS Journal
, vol.268
, pp. 4190-4199
-
-
Osmond, R.I.W.1
Hrmova, M.2
Fontaine, F.3
Imberty, A.4
Fincher, G.B.5
-
23
-
-
0033525649
-
Crystal structure of tobacco PR-5d protein at 1.8 A resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins
-
10.1006/jmbi.1998.2540. 10047487
-
Crystal structure of tobacco PR-5d protein at 1.8 A resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins. H Koiwa H Kato T Nakatsu J Oda Y Yamada F Sato, J Mol Biol 1999 286 1137 45 10.1006/jmbi.1998.2540 10047487
-
(1999)
J Mol Biol
, vol.286
, pp. 1137-45
-
-
Koiwa, H.1
Kato, H.2
Nakatsu, T.3
Oda, J.4
Yamada, Y.5
Sato, F.6
-
24
-
-
23944502586
-
Nh3d: A reference dataset of nonhomologous protein structures
-
10.1186/1472-6807-5-12. 16011803
-
Nh3d: a reference dataset of nonhomologous protein structures. B Thiruv G Quon SA Saldanha B Steipe, BMC Struct Biol 2005 5 12 10.1186/1472-6807-5-12 16011803
-
(2005)
BMC Struct Biol
, vol.5
, pp. 12
-
-
Thiruv, B.1
Quon, G.2
Saldanha, S.A.3
Steipe, B.4
-
25
-
-
58149187893
-
The GOA database in 2009 - An integrated Gene Ontology Annotation resource
-
10.1093/nar/gkn803. 18957448
-
The GOA database in 2009 - an integrated Gene Ontology Annotation resource. D Barrell E Dimmer RP Huntley D Binns C O'Donovan R Apweiler, Nucleic Acids Res 2009 37 Database 396 403 10.1093/nar/gkn803 18957448
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE
, pp. 396-403
-
-
Barrell, D.1
Dimmer, E.2
Huntley, R.P.3
Binns, D.4
O'Donovan, C.5
Apweiler, R.6
-
26
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing. Y Benjamini Y Hochberg, J Roy Statist Soc Ser B 1995 57 289 300
-
(1995)
J Roy Statist Soc ser B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
27
-
-
0029936121
-
Surprising similarities in structure comparison
-
10.1016/S0959-440X(96)80058-3. 8804824
-
Surprising similarities in structure comparison. JF Gibrat T Madej SH Bryant, Curr Opin Struct Biol 1996 6 377 85 10.1016/S0959-440X(96)80058-3 8804824
-
(1996)
Curr Opin Struct Biol
, vol.6
, pp. 377-85
-
-
Gibrat, J.F.1
Madej, T.2
Bryant, S.H.3
-
28
-
-
67651211619
-
Understanding How Diverse -Mannanases Recognize Heterogeneous Substrates
-
10.1021/bi900515d. 19441796
-
Understanding How Diverse -Mannanases Recognize Heterogeneous Substrates. LE Tailford VM Ducros JE Flint SM Roberts C Morland DL Zechel N Smith ME Bjørnvad TV Borchert KS Wilson GJ Davies HJ Gilbert, Biochemistry 2009 48 7009 18 10.1021/bi900515d 19441796
-
(2009)
Biochemistry
, vol.48
, pp. 7009-18
-
-
Tailford, L.E.1
Ducros, V.M.2
Flint, J.E.3
Roberts, S.M.4
Morland, C.5
Zechel, D.L.6
Smith, N.7
Bjørnvad, M.E.8
Borchert, T.V.9
Wilson, K.S.10
Davies, G.J.11
Gilbert, H.J.12
-
29
-
-
0030116731
-
Ethylene-induced gene expression of osmotin-like protein, a neutral isoform of tobacco PR-5, is mediated by the AGCCGCC cis-sequence
-
8673338
-
Ethylene-induced gene expression of osmotin-like protein, a neutral isoform of tobacco PR-5, is mediated by the AGCCGCC cis-sequence. F Sato S Kitajima T Koyama Y Yamada, Plant Cell Physiol 1996 37 249 55 8673338
-
(1996)
Plant Cell Physiol
, vol.37
, pp. 249-55
-
-
Sato, F.1
Kitajima, S.2
Koyama, T.3
Yamada, Y.4
-
30
-
-
0014501231
-
Structure of the insoluble hyphal wall glucan of Phytophthora cinnamomi
-
10.1021/bi00832a027. 4308722
-
Structure of the insoluble hyphal wall glucan of Phytophthora cinnamomi. LPTM Zevenhuizen S Bartnicki-Garcia, Biochemistry 1969 8 1496 1502 10.1021/bi00832a027 4308722
-
(1969)
Biochemistry
, vol.8
, pp. 1496-1502
-
-
Lptm, Z.1
Bartnicki-Garcia, S.2
-
31
-
-
0141483215
-
Oomycetes and fungi: Similar weaponry to attack plants
-
10.1016/j.tim.2003.08.002. 14557029
-
Oomycetes and fungi: similar weaponry to attack plants. M Latijnhouwers PJ de Wit F Govers, Trends Microbiol 2003 11 462 9 10.1016/j.tim.2003.08.002 14557029
-
(2003)
Trends Microbiol
, vol.11
, pp. 462-9
-
-
Latijnhouwers, M.1
De Wit, P.J.2
Govers, F.3
-
32
-
-
0028208314
-
Osmotin overexpression in potato delays development of disease symptoms
-
10.1073/pnas.91.5.1888. 11607463
-
Osmotin overexpression in potato delays development of disease symptoms. D Liu KG Raghothama PM Hasegawa RA Bressan, Proc Natl Acad Sci USA 1994 91 1888 92 10.1073/pnas.91.5.1888 11607463
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 1888-92
-
-
Liu, D.1
Raghothama, K.G.2
Hasegawa, P.M.3
Bressan, R.A.4
-
33
-
-
0028950817
-
Characterizing the microenvironment surrounding protein sites
-
10.1002/pro.5560040404. 7613462
-
Characterizing the microenvironment surrounding protein sites. SC Bagley RB Altman, Protein Sci 1995 4 622 35 10.1002/pro.5560040404 7613462
-
(1995)
Protein Sci
, vol.4
, pp. 622-35
-
-
Bagley, S.C.1
Altman, R.B.2
-
34
-
-
1042264059
-
Searching for functional sites in protein structures
-
10.1016/j.cbpa.2003.11.001. 15036149
-
Searching for functional sites in protein structures. S Jones JM Thornton, Curr Opin Chem Biol 2004 8 3 7 10.1016/j.cbpa.2003.11.001 15036149
-
(2004)
Curr Opin Chem Biol
, vol.8
, pp. 3-7
-
-
Jones, S.1
Thornton, J.M.2
-
35
-
-
33746106845
-
Ordered surface carbons distinguish antifreeze proteins and their ice-binding regions
-
10.1038/nbt1224. 16823370
-
Ordered surface carbons distinguish antifreeze proteins and their ice-binding regions. AC Doxey MW Yaish M Griffith BJ McConkey, Nat Biotechnol 2006 24 852 5 10.1038/nbt1224 16823370
-
(2006)
Nat Biotechnol
, vol.24
, pp. 852-5
-
-
Doxey, A.C.1
Yaish, M.W.2
Griffith, M.3
McConkey, B.J.4
-
36
-
-
55949096569
-
Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization
-
10.1073/pnas.0809382105. 18971341
-
Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization. F Kerff A Amoroso R Herman E Sauvage S Petrella P Filée P Charlier B Joris A Tabuchi N Nikolaidis DJ Cosgrove, Proc Natl Acad Sci USA 2008 105 16876 81 10.1073/pnas.0809382105 18971341
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 16876-81
-
-
Kerff, F.1
Amoroso, A.2
Herman, R.3
Sauvage, E.4
Petrella, S.5
Filée, P.6
Charlier, P.7
Joris, B.8
Tabuchi, A.9
Nikolaidis, N.10
Cosgrove, D.J.11
-
37
-
-
0043180474
-
PISCES: A protein sequence culling server
-
10.1093/bioinformatics/btg224. 12912846
-
PISCES: a protein sequence culling server. G Wang RL Dunbrack Jr, Bioinformatics 2003 19 1589 91 10.1093/bioinformatics/btg224 12912846
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-91
-
-
Wang, G.1
Dunbrack Jr., R.L.2
-
38
-
-
0036773411
-
Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure
-
10.1093/bioinformatics/18.10.1365. 12376381
-
Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure. BJ McConkey V Sobolev M Edelman, Bioinformatics 2002 18 1365 1373 10.1093/bioinformatics/18.10.1365 12376381
-
(2002)
Bioinformatics
, vol.18
, pp. 1365-1373
-
-
McConkey, B.J.1
Sobolev, V.2
Edelman, M.3
-
39
-
-
66949152206
-
Proteomic analysis of the response of the plant growth-promoting bacterium Pseudomonas putida UW4 to nickel stress
-
10.1186/1477-5956-7-18. 19422705
-
Proteomic analysis of the response of the plant growth-promoting bacterium Pseudomonas putida UW4 to nickel stress. Z Cheng Y-YC Wei WW Sung BR Glick BJ McConkey, Proteome Science 2009 7 18 10.1186/1477-5956-7-18 19422705
-
(2009)
Proteome Science
, vol.7
, pp. 18
-
-
Cheng, Z.1
Y-Yc, W.2
Sung, W.W.3
Glick, B.R.4
McConkey, B.J.5
-
40
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340. 15034147
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput. RC Edgar, Nucleic Acids Res 2004 32 1792 7 10.1093/nar/gkh340 15034147
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-7
-
-
Edgar, R.C.1
-
41
-
-
74549125386
-
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
10.1093/molbev/msp259. 19854763
-
SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. M Gouy S Guindon O Gascuel, Mol Biol Evol 2010 27 221 224 10.1093/molbev/msp259 19854763
-
(2010)
Mol Biol Evol
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
|