Taxonomic and functional characterisation of fungi from the Sebacina vermifera complex from common and rare orchids in the genus Caladenia

Mycorrhiza

Volumn 20, Issue 6, 2010, Pages 375-390

  Wright, Magali M ^a,b   Cross, Rob ^b   Cousens, Roger D ^a   May, Tom W ^b   McLean, Cassandra B ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

^b ROYAL BOTANIC GARDENS VICTORIA   (Australia)

Author keywords

ITS and nLSU sequencing; Mycorrhizal diversity; Orchid mycorrhiza; Sebacina vermifera complex; Symbiotic seed germination; Threatened species reintroduction

Indexed keywords

BIOGEOGRAPHY; ENDANGERED SPECIES; EXTINCTION; FUNCTIONAL CHANGE; FUNGUS; GERMINATION; HERB; POLYMORPHISM; RARE SPECIES; REINTRODUCTION; SPECIES CONSERVATION; SPECIES DIVERSITY; TAXONOMY;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BASIDIOMYCETES; BIODIVERSITY; ENDANGERED SPECIES; ENVIRONMENTAL PROTECTION; GENETIC VARIABILITY; GENETICS; GERMINATION; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY; MYCORRHIZA; ORCHIDACEAE; PHYLOGENY; PHYSIOLOGY; PLANT SEED; PRENATAL DEVELOPMENT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; BASIDIOMYCOTA; BIODIVERSITY; CONSERVATION OF NATURAL RESOURCES; ENDANGERED SPECIES; GENETIC VARIATION; GERMINATION; MYCORRHIZAE; ORCHIDACEAE; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEEDS;

CALADENIA; CALADENIA ORIENTALIS; FUNGI; ORCHIDACEAE; SEBACINA VERMIFERA; TENTACULATA;

EID: 77955052701     PISSN: 09406360     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00572-009-0290-x     Document Type: Article

References (74)

1. Allen TR, Millar T, Berch SM, Berbee ML (2003) Culturing and direct DNA extraction find different fungi from the same ericoid mycorrhizal roots. New Phytol 160: 255-272.
2. Backhouse G (2007) Are our orchids safe? A national assessment of threatened orchids in Australia. Lankesteriana 7: 8-43.
3. Backhouse G, Cameron D (2005) Application of IUCN 2001 Red List categories in determining the conservation status of native orchids of Victoria, Australia. Selbyana 26: 58-74.
4. Batty AL, Dixon KW, Brundrett M, Sivasithamparam K (2001) Constraints to symbiotic germination of terrestrial orchid seed in a Mediterranean bushland. New Phytol 152: 511-520.
5. Batty AL, Brundrett MC, Dixon KW, Sivasithamparam K (2006) New methods to improve symbiotic propagation of temperate terrestrial orchid seedlings from axenic culture to soil. Aust J Bot 54: 367-374.
6. Bidartondo MI, Bruns T, Weiss M, Sergio C, Read DJ (2003) Specialised cheating of the of the ectomycorrhizal symbiosis by a epiparasitic liverwort. Proc R Soc Lond B 270: 835-842.
7. Bonnardeaux Y, Brundrett M, Batty A, Dixon K, Koch J, Sivasithamparam K (2007) Diversity of mycorrhizal fungi of terrestrial orchids: compatibility webs, brief encounters, lasting relationships and alien invasions. Mycol Res 111: 51-61.
8. Bougoure JJ, Bougoure DS, Cairney JWG, Dearnaley JDW (2005) ITS-RFLP and sequence analysis of endophytes from Acianthus, Caladenia and Pterostylis (Orchidaceae) in south-eastern Queensland. Mycol Res 109: 452-460.
9. Cameron DD, Leake JR, Read DJ (2006) Mutualistic mycorrhizae in orchids: evidence from plant-fungus carbon and nitrogen transfers in the green-leaved terrestrial orchid Goodyera repens. New Phytol 171: 405-416.
10. Cameron DD, Johnson I, Leake JR, Read DJ (2007) Acquisition of inorganic phosphorus by the green-leaved terrestrial orchid Goodyera repens. Ann Bot 99: 831-834.
11. Clements MA, Ellyard RK (1979) The symbiotic germination of Australian terrestrial orchids. Am Orchid Soc Bull 48: 810-815.
12. Clements M, Cribb PJ, Muir H (1986) A preliminary report on the symbiotic germination of European terrestrial orchids. Kew Bull 41: 437-445.
13. Dearnaley JDW (2006) The fungal endophytes of Erythrorchis cassythoides-is this orchid saprophytic or parasitic? Australas Mycol 25: 51-57.
14. Dearnaley JDW (2007) Further advances in orchid mycorrhizal research. Mycorrhiza 17: 475-486.
15. Deshmukh S, Huckelhoven R, Schafer P, Imani J, Sharma M, Weiss M, Waller F, Kogel KH (2006) The root endophytic fungus Piriformospora indica requires host cell. Proc Nat Acad Sci 103: 18450-18457.
16. Dixon KW, Hopper SD (2009) An introduction to Caladenia Br.-Australasia's jewel among terrestrial orchids. Aust J Bot 57: 2-8.
17. Duncan M, Pritchard A, Coates F (2003) Recovery plan for fifteen threatened orchids in Victoria and South Australia 2004-2008. Department of Sustainability and Environment, Heidelberg.
18. Duncan M, Prichard A, Coates F (2005) Major threats to endangered orchids of Victoria, Australia. Selbyana 26: 189-195.
19. Eck RV, Dayhoff MO (1966) Atlas of protein sequence and structure. National Biomedical Research Foundation, Silver Springs, Maryland.
20. Fay MF, Krauss SL (2003) Orchid conservation genetics in the molecular age. In: Dixon KW, Kell SP, Barrett RL, Cribb PJ (eds) Orchid conservation. Natural History, Sabah.
21. Fell JW, Roeijmans H, Boekhout T (1999) Cystofilobasidiales, a new order of basidiomycetous yeasts. Int J Syst Bacteriol 49: 907-913.
22. Filipello-Marchisio V, Berta G (1985) Endophytes of wild orchids native to Italy: their morphology, caryology, ultrastructure and cytochemical characterisation. New Phytol 100: 623-641.
23. Gaskett AC, Winnick CG, Herberstein ME (2008) Orchid sexual deceit provokes ejaculation. Am Nat 171: E206-E212.
24. Girlanda M, Selosse MA, Cafasso D, Brilli F, Delfine S, Fabbian R, Ghignone S, Pinelli P, Segreto R, Loreto F, Cozzolino S, Perotto S (2006) Inefficient photosynthesis in the Mediterranean orchid Limodorum abortivum: are mycorrhiza always mutualisms? Mol Ecol 15: 491-504.
25. Hibbett DS, Pine EM, Langer E, Langer G, Donoghue MJ (1997) Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proc Nat Acad Sci 94: 12002-12006.
26. Hibbett DS, Gilbert LB, Donoghue MJ (2000) Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes. Nat 407: 506-508.
27. Hollick P (2004) Mycorrhizal specificity in the endemic Western Australian terrestrial orchids (subtribe Diurideae): implications for conservation. Ph. D. thesis, Murdoch University.
28. Hopper SD, Brown AP (2004) Robert Brown's Caladenia revisited, including a revision of its sister genera Cyanicula, Ericksonella and Pheladenia (Caladeniiae: Orchidaceae). Aust Syst Bot 17: 171-240.
29. Hughes KW, Petersen RH, Lickey EB (2009) Using heterozygosity to estimate a percentage DNA sequence similarity for environmental species' delimitation across basidiomycete fungi. New Phytol 182: 795-798.
30. Huynh TT, McLean CB, Coates F, Lawrie AC (2004) Effect of developmental stage and peloton morphology on success in isolation of mycorrhizal fungi in Caladenia formosa (Orchidaceae). Aust J Bot 52: 1-11.
31. Huynh TT, Thomson R, McLean CB, Lawrie AC (2009) Functional and genetic diversity of mycorrhizal fungi from single plants of Caladenia formosa (Orchidaceae). Ann Bot 104: 757-765.
32. Irwin M, Bougoure JJ, Dearnaley J (2007) Pterostylis nutans (Orchidaceae) has a specific association with two ceratobasidium root-associated fungi across its range in eastern Australia. Mycoscience 48: 231-239.
33. Jeanes J, Backhouse G (2006) Wild orchids of Victoria Australia. Aquatic Photographics, Melbourne.
34. Kottke I, Beiter A, Weiss M, Haug I, Oberwinkler F, Nebel M (2003) Heterobasidiomycetes form symbiotic associations with hepatics: Jungermanniales have sebacinoid mycobionts while Aneura pinguis (Metzgeriales) is associated with a Tulasnella species. Mycol Res 107: 957-968.
35. Marx DH, Bryan WC (1975) Growth and ectomycorrhizal development of loblolly pine seedlings in fumigated soil infested with the fungal symbiont Pisolithus tintorius. For Sci 21: 245-254.
36. McCormick MK, Whigham DF, O'Niell J (2004) Mycorrhizal diversity in photosynthetic terrestrial orchids. New Phytol 163: 425-438.
37. McKendrick SL, Leake JR, Taylor DL, Read DJ (2002) Symbiotic germination and development of the myco-heterotrophic orchid Neottia nidus-avis in nature and its requirements for locally distributed Sebacina spp. New Phytol 154: 233-247.
38. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York.
39. Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson KH (2009) Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol Bioinformatics 4: 193-201.
40. Ogura-Tsujita Y, Yukawa T (2008a) Epipactis helleborine shows strong mycorrhizal preference towards ectomycorrhizal fungi with contrasting geographic distributions in Japan. Mycorrhiza 18: 331-338.
41. Ogura-Tsujita Y, Yukawa T (2008b) High specificity in a widespread mycoheterotrophic plant, Eulophia zollingeri (Orchidaceae). Am J Bot 95: 93-97.
42. Otero JT, Bayman P, Ackerman JD (2005) Variation in mycorrhizal performance in the epiphytic orchid Tolumnia variegata in vitro: the potential for natural selection. Evol Ecol 19: 29-43.
43. Peay KG, Kennedy PG, Bruns TD (2009) Fungal community ecology: a hybrid beast with a molecular master. BioScience 58: 799-810.
44. Phillips RD, Faast R, Bower CC, Brown GR, Peakall R (2009) Implications of pollination by food and sexual deception for pollinator specificity, fruit set, population genetics and conservation of Caladenia (Orchidaceae). Aust J Bot 57: 287-306.
45. Perkins AJ, Masuhara G, McGee PA (1995) Specificity of the associations between Microtis parviflora (Orchidaceae) and its mycorrhizal fungi. Aust J Bot 43: 85-91.
46. Rasmussen HN (1995) Terrestrial orchids: from seed to mycotrophic plant. Cambridge University Press, Cambridge.
47. Rasmussen HN (2002) Recent developments in the study of orchid mycorrhiza. Plant Soil 244: 149-163.
48. Rasmussen FN, Rasmussen HN (2007) Trophic relationships in orchid mycorrhiza-diversity and implications for conservation. Lankesteriana 7: 334-341.
49. Rasmussen H, Andersen TF, Johansen B (1990) Temperature sensitivity of in vitro germination and seedling development of Dactylorhiza majalis (Orchidaceae) with and without a mycorrhizal fungus. Plant Cell Environ 13: 171-177.
50. Razafimandimbison SG, Kellogg EA, Bremer B (2004) Recent origin and phylogenetic utility of divergent its putative pseudogenes: a case study from Naucleeae s. l. (Rubiaceae). Syst Biol 53: 177-192.
51. Roberts P (1999) Rhizoctonia-forming fungi. The Herbarium, Royal Botanic Gardens, Kew.
52. Schiestl FP, Ayasse M, Paulus HF, Löfstedt C, Hansson BS, Ibarra F, Francke W (1999) Orchid pollination by sexual swindle. Nat 399: 421-422.
53. Selosse M-A, Weiss M, Jany J-L, Tillier A (2002) Communities and populations of sebacinoid Basidiomycetes associated with the achlorophyllous orchid Neottia nidus-avis (L.) L. C. M. Rich. and neighbouring tree ectomycorrhizae. Mol Ecol 11: 1831-1844.
54. Simon UK, Weiss M (2008) Intragenomic variation of fungal ribosomal genes is higher than previously thought. Mol Biol Evol 25: 2251-2254.
55. Shefferson RP, Weiss M, Kull T, Taylor DL (2005) High specificity generally characterizes mycorrhizal association in rare lady's slipper orchids, genus Cypripedium. Mol Ecol 14: 613-626.
56. Shefferson RP, Taylor DL, Weiss M, Garnica S, McCormick MK, Adams S, Gray HM, McFarland JW, Kull T, Tali K, Yukawa KT, Miyoshi K, Lee Y-I (2007) The evolutionary history of mycorrhizal specificity among Lady's slipper orchids. Evol 61: 1380-1390.
57. Smith ME, Douhan GW, Rizzo DM (2007) Ectomycorrhizal community structure in a xeric Quercus woodland based on rDNA sequence analysis of sporocarps and pooled roots. New Phytol 174: 847-863.
58. Swarts N (2007) Integrated conservation of the rare and endangered terrestrial orchid Caladenia huegelii H. G. Reichb. Ph. D. thesis, Murdoch University.
59. Swarts ND, Dixon KW (2009) Terrestrial orchid conservation in the age of extinction. Ann Bot 104: 543-556.
60. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
61. Taylor DL, Bruns TD (1999) Population, habitat and genetic correlates of mycorrhizal specialization in the 'cheating' orchids Corallorhiza maculata and C. mertensiana. Mol Ecol 8: 1719-1732.
62. Taylor DL, Bruns TD, Szaro TM, Hodges SA (2003) Divergence in mycorrhizal specialisation within Hexalectris spicata (Orchidaceae), a nonphotosynthetic desert orchid. Am J Bot 90: 1168-1179.
63. Taylor DL, Bruns TD, Hodges SA (2004) Evidence for mycorrhizal races in a cheating orchid. Proc R Soc Lond B 271: 35-43.
64. Warcup JH (1971) Specificity of mycorrhizal associations in some Australian terrestrial orchids. New Phytol 70: 41-46.
65. Tedersoo L, Gates G, Dunk CW, Lebel T, May TW, Kõljalg U, Jairus T (2009) Establishment of ectomycorrhizal fungal community on Nothofagus cunninghamii seedlings regenerating on dead wood in Australian wet temperate forests: does fruit-body type matter. Mycorrhiza 19: 403-416.
66. Warcup JH (1981) The mycorrhizal relationships of Australian orchids. New Phytol 87: 371-381.
67. Warcup JH, Talbot PHB (1967) Perfect states of Rhizoctonias associated with orchids. New Phytol 66: 631-641.
68. Weiss M, Oberwinkler F (2001) Phylogenetic relationships in Auriculariales and related groups-hypotheses derived from nuclear ribosomal DNA sequences. Mycol Res 105: 403-415.
69. Weiss M, Selosse M-A, Rexer K-H, Urban A, Oberwinkler F (2004) Sebacinales: a hitherto overlooked cosm of Heterobasidiomycetes with a broad mycorrhizal potential. Mycol Res 108: 1003-1010.
70. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenies. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, New York.
71. Wright M (2007) Maximising the effectiveness of mycorrhizal fungi in the conservation of Caladenia taxa (Orchidaceae). Ph. D. thesis, University of Melbourne.
72. Wright M, Cross R, Dixon K, Huynh T, Lawrie A, Nesbitt L, Pritchard A, Swarts N, Thomson R (2009) Propagation and reintroduction of Caladenia. Aust J Bot 57: 373-387.
73. Xu JT, Guo SX (2000) Retrospective on the research of the cultivation of Gastrodia elata Bl., a rare traditional Chinese medicine. Chin Medical J 113: 686-692.
74. Zettler LW (1997) Terrestrial orchid conservation by symbiotic seed germination: techniques and perspectives. Selbyana 18: 188-194.