TreeSNPs: A laboratory information management system (LIMS) dedicated to SNP discovery in trees

Tree Genetics and Genomes

Volumn 6, Issue 3, 2010, Pages 435-438

  Clément, Sébastien ^a   Fillon, Joël ^b   Bousquet, Jean ^b   Beaulieu, Jean ^a,b  

^a NATURAL RESOURCES CANADA   (Canada)

^b UNIVERSITÉ LAVAL   (Canada)

Author keywords

Association mapping; Candidate genes; Databases; Functional genomics; Molecular markers; SNPs

Indexed keywords

EID: 77955050745     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-009-0261-6     Document Type: Article

References (11)

1. Barenboim M, Guo Y, Jamison DC (2003) A laboratory information management system (lims) for a small-scale single nucleotide polymorphism detection. Biofizika (Mosk) 48(suppl 1): 90-96.
2. Bousquet J, Isabel N, Pelgas B, Cottrell J, Rungis D, Ritland K (2007) Spruce. In: Kole C (ed) Genome mapping and molecular breeding in plants, vol 7, Forest Trees. Springer-Verlag, Berlin, pp 93-114.
3. Deleu W, Esteras C, Roig C, González-To M, Fernández-Silva I, Gonzalez-Ibeas D, Blanca J, Aranda MA, Arús P, Nuez F, Monforte AJ, Picó MB, Garcia-Mas J (2009) A set of EST-SNPs for map saturation and cultivar identification in melon. BMC Plant Biol 9: 90.
4. Duran C, Appleby N, Clark T, Wood D, Imelfort M, Batley J, Edwards D (2009) AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants. Nucleic Acids Res 37: D951-D953.
5. Pavy N, Parsons L, Paule C, Mackay J, Bousquet J (2006) Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs. BMC Genomics 7: 174.
6. Pavy N, Pelgas B, Beauseigle S, Blais S, Gagnon F, Gosselin I, Lamothe M, Isabel N, Bousquet J (2008) Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce. BMC Genomics 9: 21.
7. Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, Miller N, Mueller LA, Mundodi S, Reiser L, Tacklind J, Weems DC, Wu Y, Xu I, Yoo D, Yoon J, Zhang P (2003) The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res 31: 224-228.
8. Sanchez-Villeda H, Schroeder S, Polacco M, McMullen M, Havermann S, Davis G, Vroh-Bi I, Cone K, Sharopova N, Yim Y, Schultz L, Duru N, Musket T, Houchins K, Fang Z, Gardiner J, Coe E (2003) Development of an integrated laboratory information management system for the maize mapping project. Bioinformatics 19: 2022-2030.
9. Voegele C, Tavtigian SV, de Silva D, Cuber S, Thomas A, Le Calvez-Kelm F (2007) A Laboratory Information Management System (LIMS) for a high throughput genetic platform aimed at candidate gene mutation screening. Bioinformatics 23: 2504-2506.
10. Wegrzyn JL, Lee JM, Tearse BR, Neale DB (2008) TreeGenes: a forest tree genome database. Int J Plant Genomics 2008: 412875.
11. Weissig H (2004) Open-Source Based LIMS Systems in Biotech. ActivX Biosciences, Inc. http://www. activx. com/press/OpenSourceLIMS. pdf. Accessed 29 Oct 2009.