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Volumn 26, Issue 15, 2010, Pages 1903-1904

Cloud-Coffee: Implementation of a parallel consistency-based multiple alignment algorithm in the T-coffee package and its benchmarking on the Amazon Elastic-Cloud

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER PROGRAM; INTERNET; METHODOLOGY; SEQUENCE ALIGNMENT;

EID: 77955034236     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq304     Document Type: Article
Times cited : (24)

References (10)
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    • Do,C.B. et al. (2005) ProbCons: probabilistic consistency-based multiple sequence alignment. Genome Res., 15, 330-340.
    • (2005) Genome Res. , vol.15 , pp. 330-340
    • Do, C.B.1
  • 2
    • 1242320272 scopus 로고    scopus 로고
    • Local homology recognition and distance measures in linear time using compressed amino acid alphabets
    • Edgar,R.C. (2004) Local homology recognition and distance measures in linear time using compressed amino acid alphabets. Nucleic Acids Res., 32, 380-385.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 380-385
    • Edgar, R.C.1
  • 4
    • 70349866695 scopus 로고    scopus 로고
    • Upcoming challenges for multiple sequence alignment methods in the high-throughput era
    • Kemena,C. and Notredame,C. (2009) Upcoming challenges for multiple sequence alignment methods in the high-throughput era. Bioinformatics, 25, 2455-2465.
    • (2009) Bioinformatics , vol.25 , pp. 2455-2465
    • Kemena, C.1    Notredame, C.2
  • 5
    • 0014757386 scopus 로고
    • Ageneral method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman,S.B. and Wunsch,C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 6
    • 2942619012 scopus 로고    scopus 로고
    • 3DCoffee: combining protein sequences and structures within multiple sequence alignments
    • O'Sullivan,O. et al. (2004) 3DCoffee: combining protein sequences and structures within multiple sequence alignments. J. Mol. Biol., 340, 385-395.
    • (2004) J. Mol. Biol. , vol.340 , pp. 385-395
    • O'Sullivan, O.1
  • 7
    • 80054884800 scopus 로고    scopus 로고
    • Exploiting parallelism on progressive alignment methods
    • Orbitg,M. et al. (2009) Exploiting parallelism on progressive alignment methods. J. Supercomp., 1, 1-9.
    • (2009) J. Supercomp. , vol.1 , pp. 1-9
    • Orbitg, M.1
  • 8
    • 0037433034 scopus 로고    scopus 로고
    • PCMA: fast and accurate multiple sequence alignment based on profile consistency
    • Pei,J. et al. (2003) PCMA: fast and accurate multiple sequence alignment based on profile consistency. Bioinformatics, 19, 427-428.
    • (2003) Bioinformatics , vol.19 , pp. 427-428
    • Pei, J.1
  • 9
    • 24644457706 scopus 로고    scopus 로고
    • BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark
    • Thompson,J.D. et al. (2005) BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark. Proteins, 61, 127-136.
    • (2005) Proteins , vol.61 , pp. 127-136
    • Thompson, J.D.1
  • 10
    • 44349140636 scopus 로고    scopus 로고
    • R-Coffee: a method for multiple alignment of non-coding RNA
    • Wilm,A. et al. (2008) R-Coffee: a method for multiple alignment of non-coding RNA. Nucleic Acids Res., 36, e52.
    • (2008) Nucleic Acids Res. , vol.36
    • Wilm, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.