Clock genes localize to quantitative trait loci for stage-specific growth in Juvenile Coho Salmon, Oncorhynchus kisutch

Journal of Heredity

Volumn 101, Issue 5, 2010, Pages 628-632

  O'Malley, Kathleen G ^a   McClelland, Erin K ^b   Naish, Kerry A ^b  

^a OREGON STATE UNIVERSITY   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

Author keywords

circadian rhythms; Clock; Cryptochrome; growth; QTL; smoltification

Indexed keywords

CRYPTOCHROME; TRANSCRIPTION FACTOR CLOCK;

ARTICLE; BODY HEIGHT; BODY WEIGHT; CIRCADIAN RHYTHM; DEVELOPMENTAL GENE; DEVELOPMENTAL STAGE; FEMALE; FISH GENETICS; GENE EXPRESSION; GENE MAPPING; GENETIC LINKAGE; GENETIC VARIABILITY; GROWTH RATE; HATCHING; LIFE HISTORY; MALE; METAMORPHOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; ONCORHYNCHUS KISUTCH; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS;

ANIMALS; CHROMOSOME MAPPING; CIRCADIAN RHYTHM; CLOCK PROTEINS; CRYPTOCHROMES; FEMALE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MALE; ONCORHYNCHUS KISUTCH; QUANTITATIVE TRAIT LOCI;

ONCORHYNCHUS KISUTCH;

EID: 77954977635     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esq063     Document Type: Article

References (35)

1. Arnesen AM, Taften H, Agustsson T, Stefansson SO, Handeland SO, Bjornsson BT. 2003. Osmoregulation, feed intake, growth and growth hormone levels in 0+ Atlantic salmon (Salmo salar L.) transferred to seawater at different stages of smolt development. Aquaculture. 222: 167-187.
2. Beckman BR, Larsen DA. 1998. Relation of fish size and growth rate to migration of spring Chinook salmon smolts. N Am J Fish Manag. 18:537-546.
3. Bradshaw H, Otto K, Frewen B, McKay J, Schemske DW. 1998. Quantitative trait loci affecting differences in floral morphology between two species of monkeyflower (Mimulus). Genetics. 149:367-382.
4. Churchill GA, Doerge RW. 1994. Empirical threshold values for quantitative trait mapping. Genetics. 138:963-971.
5. Curran KL, LaRue S, Bronson B, Solis J, Trow A, Sarver N. 2008. Circadian genes are expressed during early development in Xenopus laevis. PLoS one. 3:e2749. doi:10.1371/journal.pone.0002749.
6. Danzmann RG, Gharbi K. 2001. Gene mapping in fishes: a means to an end. Genetica. 111:3-23.
7. Davie A, Minghetti M, Migaud H. 2009. Seasonal variations in clock-gene expression in Atlantic salmon (Salmo salar). Chronobiol Int. 26:379-395.
8. Duston J, Saunders RL. 1990. The entrainment of photoperiod on hypoosmoregulartory and growth-related aspects of smolting in Atlantic salmon (Salmo salar). Can J Zool. 68:707-715.
9. Haidle L, Janssen JE, Gharbi K, Moghadam HK, Ferguson MM, Danzmann RG. 2008. Determination of quantitative trait loci (QTL) for early male maturation in rainbow trout (Oncorhynchus mykiss). Mar Biotechnol. 10:579-592.
10. Hardin PE. 2004. Transcription regulation within the circadian clock: the E-box and beyond. J Biol Rhy. 19:348-360.
11. Hirayama J, Kaneko M, Cardone L, Cahill G, Sassone-Corsi P. 2005. Analysis of circadian rhythms in zebrafish. Methods Enzymol. 393: 186-204.
12. Hoar WS. 1976. Smolt-transformation-evolution, behavior, and physiology. J Fish Res Board Can. 33:1233-1252.
13. Hu Z, Xu S. 2008. A simple method for calculating the statistical power for detecting a QTL located in a marker interval. Heredity. 101:48-52.
14. Ko CH, Takahashi JS. 2006. Molecular components of the mammalian circadian clock. Human Mol Genet. 15:R271-R277.
15. Lander ES, Botstein D. 1989. Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics. 121:185-199.
16. Leder EH, Danzmann RG, Ferguson MM. 2006. The candidate gene, Clock, localizes to a strong spawning time quantitative trait locus region in rainbow trout. J Hered. 97:74-80.
17. Lynch M. 1998. Walsh B. 1998. Genetics and analysis of quantitative traits. Sunderland (UK): Sinauer Associates, Inc.
18. Maxime V. 2002. Effects of transfer to sea water on standard and routine metabolic rates in smolting Atlantic salmon at different stages of seawater adaptability. J Fish Biol. 61:1423-1432.
19. McClelland EK, Naish KA. 2008. A genetic linkage map for coho salmon (Oncorhynchus kisutch). Anim Genet. 39:169-179.
20. McClelland EK, Naish KA. 2010. Quantitative trait locus analysis of hatch timing, weight, length and growth rate in coho salmon, Oncorhynchus kisutch. Heredity. doi: 10.1038/hdy.2010.22.
21. Morse D, Cermakian N, Brancorsini S, Parvinen M, Sassone-Corsi P. 2003. No circadian rhythms in testis: period1 expression is clock independent and developmentally regulated in the mouse. Mol Endocrinol. 17:141-151.
22. Nichols KM, Broman KW, Sundin K, Young JM, Wheeler PA, Thorgaard GH. 2007. Quantitative trait loci maternal cytoplasmic environment interaction for development rate in Oncorhynchus mykiss. Genetics. 175: 335-347.
23. Nichols KM, Edo AF, Wheeler PA, Thorgaard GH. 2008. The genetic basis of smoltification-related traits in Oncorhynchus mykiss. Genetics. 179: 1559-1575.
24. O'Malley KG, Sakamoto T, Danzmann RG, Ferguson MM. 2003. Quantitative trait loci for spawning date and body weight in rainbow trout: testing for conserved effects across ancestrally duplicated chromosomes. J Hered. 94:273-284.
25. O'Malley KG, Camara MD, Banks MA. 2007. Candidate loci reveal genetic differentiation between temporally divergent migratory runs of Chinook salmon (Oncorhynchus tshawytscha). Mol Ecol. 16:4930-4941.
26. O'Malley KG, Banks MA. 2008. A latitudinal cline in the Chinook salmon (Oncorhynchus tshawytscha) Clock gene: evidence for selection on PolyQ length variants. Proc R Soc B Biol Sci. 275:2813-2821.
27. Pearcy WG. 1992. Ocean ecology of North Pacific salmonids. Seattle (WA): University of Washington Press. pp.179.
28. Schwassmann HO. 1988. Biological rhythms. In: Hoar WS, Randall DJ, editors. Fish physiology. New York: Academic Press. p. 371-416.
29. Shearer KD, Swanson P. 2000. The effect of whole body lipid on early sexual maturation of 1+ age male Chinook salmon (Oncorhynchus tshawytscha). Aquaculture. 190:343-367.
30. Quinn TP. 2005. The behavior and ecology of Pacific salmon and trout. Seattle (WA): University of Washington Press.
31. Reppert SM, Weaver DJ. 2002. Coordination of circadian timing in mammals. Nature. 418:935-941.
32. Roff DA. 2007. A centennial celebration for quantitative genetics. Evolution. 61:1017-1032.
33. Thorpe JE. 2007. Maturation responses of salmonids to changing developmental opportunities. Marine Ecol Prog Ser. 335:285-288.
34. Turek FW, Joshu C, Kohsaka A, Lin E, Ivanova G, McDearmon E, Laposky A, Losee-Olson S, Easton A, Jensen DR, et al. 2004. Obesity and metabolic syndrome in circadian Clock mutant mice. Science. 308: 1043-1045.
35. Voorrips RE. 2002. MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered. 93:77-78.