Map-based cloning of the rice cold tolerance gene Ctb1

Plant Science

Volumn 179, Issue 1-2, 2010, Pages 97-102

  Saito, Koji ^a   Hayano Saito, Yuriko ^a   Kuroki, Makoto ^a   Sato, Yutaka ^a  

^a NATIONAL AGRICULTURAL RESEARCH CENTER FOR HOKKAIDO REGION   (Japan)

Author keywords

Anther length; Cold tolerance; F box protein; QTL; Rice

Indexed keywords

EID: 77954863779     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2010.04.004     Document Type: Article

References (47)

1. Satake T., Hayase H. Male sterility caused by cooling treatment at the young microspore stage in rice plants, V. Estimation of pollen developmental stage and the most sensitive stage to coolness. Proc. Crop Sci. Soc. Jpn. 1970, 39:468-473.
2. Nishiyama I. Male sterility caused by cooling treatment at the young microspore stage in rice plants, XIII. Ultrastructure of tapetal hypertrophy without primary wall. Proc. Crop Sci. Soc. Jpn. 1976, 45:270-278.
3. Ito N. Male sterility caused by cooling treatment at the young microspore stage in rice plants, XVI. Changes in carbohydrates, nitrogenous and phosphorous compounds in rice anthers after cooling treatment, Japan. J. Crop Sci. 1978, 47:318-323.
4. Oliver S.N., Van Dongen J.T., Alfred S.C., Mamun E.A., Zhao X., Saini H.S., Fernandes S.F., Blanchard C.L., Sutton B.G., Geigenberger P., Dennis E.S., Dolferus R. Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility. Plant Cell Environ. 2005, 28:1534-1551.
5. Oliver S.N., Dennis E.S., Dolferus R. ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice. Plant Cell Physiol. 2007, 48:1319-1330.
6. Kawaguchi K., Shibuya N., Ishii T. A novel tetrasaccharide, with a structure similar to the terminal sequence of an arabinogalactan-protein, accumulates in rice anthers in a stage-specific manner. Plant J. 1996, 9:777-785.
7. Wen J.Q, Oono K., Imai R. Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice. Plant Physiol. 2002, 129:1880-1891.
8. Yamaguchi T., Nakayama K., Hayashi T., Yazaki J., Kishimoto N., Kikuchi S., Koike S. cDNA microarray analysis of rice anther genes under chilling stress at the microsporogenesis stage revealed two genes with DNA transposon Castaway in the 5'-flanking region. Biosci. Biotechnol. Biochem. 2004, 68:1315-1323.
9. Imin N., Kerim T., Weinman J.J., Rolfe B.G. Low temperature treatment at the young microspore stage induces protein changes in rice anthers. Mol. Cell Proteomics 2006, 5:274-292.
10. Xu L.M., Zhou L., Zeng Y.W., Wang F.M., Zhang H.L., Shen S.Q., Li Z.C. Identification and mapping of quantitative trait loci for cold tolerance at the booting stage in a japonica rice near-isogenic line. Plant Sci. 2008, 174:340-347.
11. Andaya V.C., Mackill D.J. QTLs conferring cold tolerance at the booting stage of rice using recombinant inbred lines from a japonica×indica cross. Theor. Appl. Genet. 2003, 106:1084-1090.
12. Takeuchi Y., Hayasaka H., Chiba B., Tanaka I., Shimano T., Yamagishi M., Nagano K., Sasaki T., Yano M. Mapping quantitative trait loci controlling cool-temperature tolerance at booting stage in temperate japonica rice. Breed. Sci. 2001, 51:191-197.
13. Zeng Y., Yang S., Cui H., Yang X., Xu L., Du J., Pu X., Li Z., Cheng Z., Huang X. QTLs of cold tolerance-related traits at the booting stage for NIL-RILs in rice revealed by SSR. Genes Genomics 2009, 31:143-154.
14. Saito K., Miura K., Nagano K., Hayano-Saito Y., Saito A., Araki H., Kato A. Chromosomal location of quantitative trait loci for cool tolerance at the booting stage in rice variety 'Norin-PL8'. Breed. Sci. 1995, 45:337-340.
15. Kuroki M., Saito K., Matsuba S., Yokogami N., Shimizu H., Ando I., Sato Y. A quantitative trait locus for cold tolerance at the booting stage on rice chromosome 8. Theor. Appl. Genet. 2007, 115:593-600.
16. Saito K., Miura K., Nagano K., Hayano-Saito Y., Araki H., Kato A. Identification of two closely linked quantitative trait loci for cold tolerance on chromosome 4 of rice and their association with anther length. Theor. Appl. Genet. 2001, 103:862-868.
17. Saito K., Hayano-Saito Y., Maruyama-Funatsuki W., Sato Y., Kato A. Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice. Theor. Appl. Genet. 2004, 109:515-522.
18. Satake T., Toriyama K. Two extremely cool-tolerance varieties. Int. Rice Res. Newsl. 1979, 4(2):9-10.
19. Abe N., Kotaka S., Toriyama K., Kobayashi M. Development of the " Rice Norin-PL8" with high tolerance to cool temperature at the booting stage. Res. Bull. Hokkaido Natl. Agric. Exp. Stn. 1989, 152:9-17.
20. Klimyuk V.I., Carroll B.J., Thomas C.M., Jones J.D.G. Alkali treatment for rapid preparation of plant material for reliable PCR analysis. Plant J. 1993, 3:493-494.
21. Murray M.G., Thompson W.F. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 1980, 8:4321-4325.
22. Hiei Y., Ohta S., Komari T., Kumashiro T. Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of T-DNA. Plant J. 1994, 6:271-282.
23. Futsuhara Y., Toriyama K. Studies on the testing methods of cold resistance in rice. Jpn. J. Breed. 1964, 14:166-172.
24. Satake T., Nishiyama I., Ito N., Hayase H. Male sterility caused by cooling treatment at the meiotic stage in rice plants, I. Methods of growing rice plants and inducing sterility in the phytotron. Proc. Crop Sci. Soc. Jpn. 1969, 38:603-609.
25. Suzuki S. Cold tolerance in rice plants with special reference to the floral characters, II. Relations between floral characters and the degree of cold tolerance in segregating generations. Jpn. J. Breed. 1982, 32:9-16.
26. Kuroda H., Takahashi N., Shimada H., Seki M., Shinozaki K., Matsui M. Classification and expression analysis of Arabidopsis F-box-containing protein genes. Plant Cell Physiol. 2002, 43:1073-1085.
27. Jain M., Nijhawan A., Arora R., Agarwal P., Ray S., Sharma P., Kapoor S., Tyagi A.K., Khurana J.P. F-box proteins in rice, Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Genome Anal. 2007, 143:1467-1483.
28. Gagne J.M, Downes B.P., Shiu S.H., Durski A.M., Vierstra R.D. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:11519-11524.
29. Andrade M.A., Gonzalez-Guzman M., Serrano R., Rodriguez P.L. A combination of the F-box motif and kelch repeats defines a large Arabidopsis family of F-box proteins. Plant Mol. Biol. 2001, 46:603-614.
30. Nelson D.C., Lasswell J., Rogg L.E., Cohen M.A., Bartel B. FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis. Cell 2000, 101:331-340.
31. Kiyosue T, Wada M. LKP1 (LOV kelch protein 1): a factor involved in the regulation of flowering time in Arabidopsis. Plant J. 2000, 23:807-815.
32. Somers D.E., Schultz T.F., Milnamow M., Kay S.A. ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell 2000, 101:319-329.
33. Schultz T.F., Kiyosue T., Yanovsky M., Wada M., Kay S.A. A role for LKP2 in the circadian clock of Arabidopsis. Plant Cell 2001, 13:2659-2670.
34. Saruyama H., Tanida M. Effect of chilling on activated oxygen-scavenging enzymes in low temperature-sensitive and -tolerant cultivars of rice (Oryza sativa L.). Plant Sci. 1995, 109:105-113.
35. Kuk Y.I., Shin J.S., Burgos N.R., Hwang T.E., Han O., Cho B.H., Jung S., Guh J.O. Antioxidative enzymes offer protection from chilling damage in rice plants. Crop Sci. 2003, 43:2109-2117.
36. Vaucheret H. Plant ARGONAUTES. Trends Plant Sci. 2008, 13:350-358.
37. Nonomura K., Morohoshi A., Nakano M., Eiguchi M., Miyao A., Hirochika H., Kurata N. A germ cell-specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice. Plant Cell 2007, 12:2583-2594.
38. Kapoor M., Arora R., Lama T., Nijhawan A., Khurana J.P., Tyagi A.K., Kapoor S. Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analysis during reproductive development and stress in rice. BMC Genomics 2008, 9:451.
39. Oka H., Morishima H. Variations in the breeding systems of a wild rice, Oryza perennis. Evolution 1965, 21:249-258.
40. Suzuki S. Cold tolerance in rice plants with special reference to the floral characters, I. Varietal differences in anther and stigma lengths and the effects of planting densities on these characters. Jpn. J. Breed. 1981, 31:57-64.
41. Nishiyama I. Male sterility caused by cooling treatment at the young microspore stage in rice plants, XXVI. The number of ripened pollen grains and the difference in susceptibility to coolness among spikelets on the panicle. Jpn. J. Crop Sci. 1983, 52:307-313.
42. Nakamura T., Chiba M., Koike S., Nishiyama I. Number of pollen grains in rice cultivars with different cool-weather resistance at the young microspore stage. Plant Prod. Sci. 2000, 3:299-305.
43. Murray F., Kalla R., Jacobsen J., Gubler F. A role for HvGAMYB in anther development. Plant J. 2003, 33:481-491.
44. Kaneko M., Inukai Y., Ueguchi-Tanaka M., Itoh H., Izawa T., Kobayashi Y., Hattori T., Miyao A., Hirochika H., Ashikari M., Matsuoka M. Loss-of-function mutations of the rice GAMYB gene impair α-amylase expression in aleurone and flower development. Plant Cell 2004, 16:33-44.
45. Nishiyama I. Male sterility caused by cooling treatment at the young microspore stage in rice plants, XI. Effects of some substances on sterility. Proc. Crop Sci. Soc. Jpn. 1975, 44:397-402.
46. Yoshioka T., Suge H. Damage of seed fertility by cooling treatment and endogenous gibberellins in ears of rice plants (Oryza sativa L.). Breed. Sci. 1996, 46:173-178.
47. Konishi S., Izawa T., Lin S.Y., Ebana K., Fukuta Y., Sasaki T., Yano M. An SNP caused loss of seed shattering during rice domestication. Science 2006, 312:1392-1396.