The GmFAD7 gene family from soybean: Identification of novel genes and tissue-specific conformations of the FAD7 enzyme involved in desaturase activity

Journal of Experimental Botany

Volumn 61, Issue 12, 2010, Pages 3371-3384

  Andreu, Vanesa ^a   Lagunas, Beatriz ^a   Collados, Raquel ^a   Picorel, Rafael ^a   Alfonso, Miguel ^a  

^a CSIC   (Spain)

Author keywords

Desaturase; FAD7; Fatty acid; Gene expression; Plastid; Protein conformation; Soybean

Indexed keywords

ACYL COENZYME A DESATURASE; FATTY ACID; ISOENZYME; PLANT RNA; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHLOROPLAST; ENZYMOLOGY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; PHYLOGENY; PLANT GENE; PLANT LEAF; SEQUENCE ANALYSIS; SOYBEAN;

AMINO ACID SEQUENCE; CHLOROPLASTS; FATTY ACID DESATURASES; FATTY ACIDS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; ISOENZYMES; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT LEAVES; PLANT PROTEINS; RNA, PLANT; SEQUENCE ANALYSIS, PROTEIN; SOYBEANS;

GLYCINE MAX;

EID: 77954795974     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erq158     Document Type: Article

References (36)

1. B states, and increased sensitivity to light stress. Plant Physiology 112, 1499-1508.
2. Andreu V, Collados R, Testillano PS, Risueño MC, Picorel R, Alfonso M. 2007. In situ molecular identification of the plastid x3 fatty-acid desaturase FAD7 from soybean: evidence of thylakoid membrane localization. Plant Physiology 145, 1336-1344.
3. Berberich T, Harada M, Sugawara K, Kodama H, Iba K, Kusano T. 1998. Two maize genes encoding x-3 fatty-acid desaturase and their differential expression to temperature. Plant Molecular Biology 36, 297-306.
4. Bilyeu KD, Palavalli L, Sleper DA, Beuselinck PR. 2003. Three microsomal desaturase genes contribute to soybean linolenic acid levels. Crop Science 43, 1833-1838.
5. Bligh EG, Dyer WS. 1959. A rapid method of total lipid extraction and purification. Canadian Journal of Biochemistry and Physiology 37, 911-917.
6. Browse J, Somerville C. 1991. Glycerolipid synthesis: biochemistry and regulation. Annual Review of Plant Physiology and Plant Molecular Biology 42, 467-506.
7. Collados R, Andreu V, Picorel R, Alfonso M. 2006. A light-sensitive mechanism differently regulates transcription and transcript stability of x3 fatty-acid desaturases (FAD3, FAD7, and FAD8) in soybean photosynthetic cell suspensions. FEBS Letters 580, 4934-4940.
8. Devoto A, Ellis C, Magusin A, Chang HS, Chilcott C, Zhu T, Turner JG. 2005. Expression profiling reveals COI1 to be a key regulator of genes involved in wound-and methyl jasmonate-induced secondary metabolism, defence and hormone interactions. Plant Molecular Biology 58, 497-513.
9. Dyer JM, Chapital DC, Cary JW, Pepperman AB. 2001. Chilling-sensitive, post-transcriptional regulation of a plant fatty acid desaturase expressed in yeast. Biochemical and Biophysical Research Communications 282, 1019-1025.
10. Gibson S, Arondel V, Iba K, Somerville C. 1994. Cloning of a temperature-regulated gene encoding a chloroplast x-3 desaturase from Arabidopsis thaliana. Plant Physiology 106, 1615-1621. (Pubitemid 24986592)
11. Guindon S, Gascuel O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52, 696-704.
12. Hamada T, Nishiuchi T, Kodama H, Nishimura M, Iba K. 1996. cDNA cloning of a wound-inducible gene encoding a plastid x3 fatty-acid desaturase from tobacco. Plant and Cell Physiology 37, 606-611.
13. Heppard EP, Kinney AJ, Stecca KL, Miao G. 1996. Developmental and growth temperature regulation of different microsomal x-6 desaturase genes in soybeans. Plant Physiology 110, 311-319.
14. Hernández ML, Mancha M, Mart?́nez-Rivas JM. 2005. Molecular cloning and characterization of genes encoding two microsomal oleate desaturases (FAD2) from olive. Phytochemistry 66, 1417-1426.
15. Horiguchi G, Kawakami N, Kusumi K, Kodama H, Iba K. 1998. Developmental regulation of genes for microsome and plastid x3 fatty-acid desaturases in wheat (Triticum aestivum L.). Plant and Cell Physiology 39, 540-544.
16. Horiguchi G, Fuse T, Kawakami N, Kodama H, Iba K. 2000. Temperature-dependent translational regulation of the ER x-3 fatty-acid desaturase gene in wheat root tips. The Plant Journal 24, 805-813.
17. Iba K. 2002. Acclimative response to temperature stress in higher plants: approaches of gene engineering for temperature tolerance. Annual Review of Plant Biology 53, 225-245.
18. Lemieux B, Miquel M, Somerville C, Browse J. 1990. Mutants of Arabidopsis with alterations in seed lipid fatty acid composition. Theoretical and Applied Genetics 80, 234-240.
19. Matsuda O, Sakamoto H, Hashimoto T, Iba K. 2005. A temperature-sensitive mechanism that regulates post-translational stability of a plastidial x-3 fatty-acid desaturase (FAD8) in Arabidopsis leaf tissues. Journal of Biological Chemistry 280, 3597-3604.
20. Matsuda O, Sakamoto H, Nakao Y, Oda K, Iba K. 2009. CTD phosphatases in the attenuation of wound-induced transcription of jasmonic acid biosynthetic gene in Arabidopsis. The Plant Journal 57, 96-108.
21. Mikkilineni V, Rocheford TR. 2003. Sequence variation and genomic organization of fatty acid desaturase-2 (fad2) and fatty acid desaturase-6 (fad6) cDNAs in maize. Theoretical and Applied Genetics 106, 1326-1332.
22. Murphy DJ, Piffanelli P. 1998. Fatty acid desaturases: structure, mechanism and regulation. In: Harwood HL, ed. Plant lipid biosynthesis. Cambridge: Cambridge University Press, 95-130.
23. Nishiuchi T, Hamada T, Kodama H, Iba K. 1997. Wounding changes the spatial expression pattern of the Arabidopsis plastid x3 fatty-acid desaturase gene (FAD7) through different signal transduction pathways. The Plant Cell 9, 1701-1712.
24. Okuley J, Lightner J, Feldman K, Yadav N, Lark E, Browse J. 1994. Arabidopsis FAD2 gene encodes the enzyme that is essential for polyunsaturated lipid synthesis. The Plant Cell 6, 147-158.
25. Pirtle IL, Kongcharoensuntorn W, Nampaisansuk M, Knesek JE, Chapman KD, Pirtle RM. 2001. Molecular cloning and functional expression of the gene for a cotton D-12 desaturase (FAD2-2). Biochimica et Biophysica Acta 1522, 122-129.
26. Rath A, Glibonicka M, Nadeau VG, Chen G, Deber CM. 2009. Detergent binding explains anomalous SDS-PAGE migration of membrane proteins. Proceedings of the National Academy of Sciences, USA 106, 1760-1765.
27. Schmutz J, Cannon SB, Schlueter J, et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature 463, 178-183.
28. Shanklin J, Cahoon EB. 1998. Desaturation and related modifications of fatty acids. Annual Review of Plant Physiology and Plant Molecular Biology 49, 611-641.
29. Shoemaker R, Polzin K, Labate J, et al. 1996. Genome duplication in soybean (Glycine subgenus soja). Genetics 144, 329-338.
30. Somerville C, Browse J. 1996. Dissecting desaturation: plants prove advantageous. Trends in Cell Biology 6, 148-153.
31. Somerville C, Browse J, Jaworski JG, Ohlrogge JB. 2000. Lipids. In: Buchanan B, Gruissem W, Jones R, eds. Biochemistry and molecular biology of plants. Rockville, Maryland: American Society of Plant Physiologists, 456-527.
32. Tang GQ, Novitzky WP, Griffin HC, Huber SC, Dewey RE. 2005. Oleate desaturase enzymes of soybean: evidence of regulation through differential stability and phosphorylation. The Plant Journal 44, 433-446.
33. Torres-Franklin ML, Repellin A, Huynh VB, d'Arcy-Lameta A, Zuily-Fodil Y, Pham-Thi AT. 2009. Omega-3 fatty acid desaturase (FAD3, FAD7, FAD8) gene expression and linolenic acid content in cowpea leaves submitted to drought and after rehydration. Environmental and Experimental Botany 65, 162-169.
34. Wallis JG, Browse J. 2002. Mutants of Arabidopsis reveal many roles for membrane lipids. Progress in Lipid Research 41, 254-278.
35. Wilson CJ, Apiyo D, Wittung-Stafshede P. 2004. Role of cofactors in metalloprotein folding. Quarterly Reviews on Biophysics 37, 285-314.
36. Yadav NS, Wierzbicki A, Aegerter M, et al. 1993. Cloning of higher plant x3 fatty-acid desaturases. Plant Physiology 103, 467-476.