Phylogeny and systematics of the genus Calonectria

Studies in Mycology

Volumn 66, Issue , 2010, Pages 31-69

  Lombard, L ^a   Crous, P W ^b   Wingfield, B D ^a   Wingfield, M J ^a  

^a UNIVERSITY OF PRETORIA   (South Africa)

^b CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

Author keywords

Cylindrocladium; DNA phylogeny; Sexual compatibility; Taxonomy

Indexed keywords

EID: 77954772385     PISSN: 01660616     EISSN: None     Source Type: Journal    
DOI: 10.3114/sim.2010.66.03     Document Type: Article

References (89)

1. Alfieri SA, El-Gholl NE, Schoulties CL (1982). Homothallism in Calonectria ilicicola. Mycologia 74: 513-514.
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). Basic Local Alignment Search Tool. Journal of Molecular Biology 215: 403-410.
3. Boedijn KB, Reitsma J (1950). Notes on the genus Cylindrocladium. Reinwardtia 1: 51-60.
4. Boesewinkel HJ (1982). Heterogeneity within Cylindrocladium and its teleomorphs. Transactions of the British Mycological Society 78: 553-556.
5. Carbone I, Kohn LM (1999). A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556.
6. Chase AR, Poole RT (1987). Effects of potting medium pH and air temperature on severity of Cylindrocladium root and petiole rot of Spathiphyllum sp. Plant Disease 71: 509-511.
7. Crous PW (2002). Taxonomy and pathology of Cylindrocladium (Calonectria) and allied genera. APS Press, St. Paul, Minnesota, U.S.A.
8. Crous PW, Alfenas AC, Junghans TG (1998a). Variability within Calonectria ovata and its anamorph Cylindrocladium ovatum from Brazil. Sydowia 50: 1-13.
9. Crous PW, Alfenas AC, Wingfield MJ (1993a). Calonectria scoparia and Calonectria morganii sp. nov., and variation among isolates of their Cylindrocladium anamorphs. Mycological Research 97: 701-708.
10. st century. Studies in Mycology 50: 19-22.
11. Crous PW, Groenewald JZ, Hill CF (2002). Cylindrocladium pseudonaviculatum sp. nov. from New Zealand, and new Cylindrocladium records from Vietnam. Sydowia 54: 23-33.
12. Crous PW, Groenewald JZ, Risède J-M, Simoneau P, Hyde KD (2006). Calonectria species and their Cylindrocladium anamorphs: species with clavate vesicles. Studies in Mycology 55: 213-226.
13. Crous PW, Groenewald JZ, Risède J-M, Simoneau P, Hywel-Jones NL (2004b). Calonectria species and their Cylindrocladium anamorphs: species with sphaeropedunculate vesicles. Studies in Mycology 50: 415-430.
14. Crous PW, Janse BJH, Victor D, Marais GF, Alfenas AC (1993b). Molecular characterization of Cylindrocladium spp. with three-septate conidia and ovoidlike vesicles. Systemic and Applied Microbiology 16: 266-273.
15. Crous PW, Kang JC, Schoch CL, Mchau GRA (1999). Phylogenetic relationships of Cylindrocladium pseudogracile and Cylindrocladium rumohrae with morphologically similar taxa, based on morphology and DNA sequences of internal transcribed spacers and β- tubulin. Canadian Journal of Botany 77: 1813-1820.
16. Crous PW, Korf A, Zyl WH van (1995). Nuclear DNA polymorphisms of Cylindrocladium species with 1-septate conidia and clavate vesicles. Systematic and Applied Microbiology 18: 224-250.
17. Crous PW, Peerally A (1996). Gliocladiopsis irregular sp. nov. and notes on Cylindrocladium spathiphylli. Mycotaxon 58: 119-128.
18. Crous PW, Phillips AJL, Wingfield MJ (1991). The genera Cylindrocladium and Cylindrocladiella in South Africa, with special reference to forestry nurseries. South African Forestry Journal 157: 69-85.
19. Crous PW, Phillips AJL, Wingfield MJ (1992). Effects of cultural conditions on vesicle and conidium morphology in species of Cylindrocladium and Cylindrocladiella. Mycologia 84: 497-504.
20. Crous PW, Seifert KA (1998). Megaconidia as an additional taxonomic character in Cylindrocladium, with a note on Cylindrocladiopsis. Fungal Diversity 1: 51-62.
21. Crous PW, Theron L, Zyl WH van (1997). Delineation of Cylindrocladium species with 1-3-septate conidia and clavate vesicles based on morphology and rDNA RFLPs. Mycological Research 101: 210-214.
22. Crous PW, Wingfield MJ (1994). A monograph of Cylindrocladium, including anamorphs of Calonectria. Mycotaxon 51: 341-435.
23. Crous PW, Wingfield MJ, Mohammed C, Yuan ZQ (1998). New foliar pathogens of Eucalyptus from Australia and Indonesia. Mycological Research 102: 527-532.
24. Cunningham CW (1997). Can three incongruency tests predict when data should be combined? Molecular Biology and Evolution 14: 733-740.
25. Dettman JR, Jacobson DJ, Taylor JW (2003). A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora. Evolution 57: 2703-2720.
26. El-Gholl NE, Alfenas AC, Crous PW, Schubert TS (1993). Description and pathogenicity of Cylindrocladium ovatum sp. nov. Canadian Journal of Botany 71: 466-470.
27. El-Gholl NE, Alfenas AC, Junghans, DT, Schubert TS, Miller JW, Leahy EM (1997). Description of Calonectria rumohrae sp. nov. (anamorph = Cylindrocladium rumohrae sp. nov.). Mycotaxon 64: 467-484.
28. El-Gholl NE, Uchida JY, Alfenas AC, Schubert TS, Alfieri SA, Chase AR (1992). Induction and description of perithecia of Calonectria spathiphylli sp. nov. Mycotaxon 45: 285-300.
29. Farris JS, Källersjö M, Kluge AG, Bult C (1994). Testing significance of incongruence. Cladistics 10: 315-320.
30. Fisher NL, Burgess LW, Toussoun TA, Nelson PE (1982). Carnation leaves as a substrate and for preserving cultures of Fusarium species. Phytopathology 72: 151-153.
31. Gadgil PD, Dick MA (2004). Fungi silvicolae novazelandiae: 5. New Zealand Journal of Forestry Science 34: 316-323.
32. Geurber JC, Correll JC (2001). Characterization of Glomerella acutata, the teleomorph of Colletotrichum acutatum. Mycologia 93: 216-229.
33. Gueidan C, Roux C, Lutzoni F (2007). Using multigene phylogeny analysis to assess generic delineation and character evolution in Verrucariaceae (Verrucariales, Ascomycota). Mycological Research 111: 1145-1168.
34. Halleen F, Schroers H-J, Groenewald JZ, Rego C, Oliveira H, Crous PW (2006). Neonectria liriodendra sp. nov., the main causal agent of black foot disease of grapevine. Studies in Mycology 55: 227-234.
35. Hawksworth DL (2005). Two major changes in fungal nomenclature enacted in Vienna. Mycological Research 109: 1061-1062.
36. Helgason T, Watson IJ, Young PW (2003). Phylogeny of the Glomerales and Diversisporales (Fungi: Glomeromycota) from actin and elongation factor 1-alpha sequences. FEMS Microbiology Letters 229: 127-132.
37. Henricot B, Culham A (2002). Cylindrocladium buxicola, a new species affecting Buxus spp., and its phylogenetic status. Mycologia 94: 980-997.
38. Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, et al. (2007). A higherlevel phylogenetic classification of the Fungi. Mycological Research 111: 509-547.
39. Hillis DM, Bull JJ (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192.
40. Hoog GS de, Gerrits van den Ende AHG (1998). Molecular diagnostics of clinical strains of filamentous Basidiomycetes. Mycoses 41: 183-189.
41. Hunter BB, Barnett HL (1978). Growth and sporulation of species and isolates of Cylindrocladium in culture. Mycologia 70: 614-635.
42. Hunter GC, Wingfield BD, Crous PW, Wingfield MJ (2006). A multi-gene phylogeny for species of Mycosphaerella occurring on Eucalyptus leaves. Studies in Mycology 55: 147-161.
43. Jeng RS, Dumas M, Liu FH, Wang CL, Hubbes M (1997). DNA analysis of Cylindrocladium floridanum isolates from selected forest nurseries. Mycological Research 101: 285-291.
44. Kang JC, Crous PW, Old KM, Dubzinski MJ (2001a). Non-conspecificity of Cylindrocladium quinqueseptatum and Calonectria quinqueseptata based on a β-tubulin gene phylogeny and morphology. Canadian Journal of Botany 79: 1241-1247.
45. Kang JC, Crous PW, Schoch CL (2001b). Species concepts in the Cylindrocladium floridanum and Cy. spathiphylli complexes (Hypocreaceae) based on multiallelic sequence data, sexual compatibility and morphology. Systematic and Applied Microbiology 24: 206-217.
46. Katoh K, Kuma K, Toh H, Miyata T (2005). MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acid Research 33: 511-518.
47. Kim KD, Russin JS, Snow JP (1998). Susceptibility to Calonectria ilicicola in soybean grown in greenhouse and field. Korean Journal of Crop Science 43: 239-244.
48. Leahy RM, Schubert TS, El-Gholl NE (2000). Cylindrocladium gordoniae sp. nov. Mycotaxon 76: 77-83.
49. Librado P, Rozas J (2009). DnaSP v. 5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
50. Lombard L, Bogale M, Montenegro F, Wingfield BD, Wingfield MJ (2008). A new bark canker disease of the tropical hardwood tree Cedrelinga cateniformis in Ecuador. Fungal Diversity 31: 73-81.
51. Lombard L, Crous PW, Wingfield BD, Wingfield MJ (2010a). Multigene phylogeny and mating tests reveal three cryptic species related to Calonectria pauciramosa. Studies in Mycology 66: 1-14.
52. Lombard L, Crous PW, Wingfield BD, Wingfield MJ (2010b). Species concepts in Calonectria (Cylindrocladium). Studies in Mycology 66: 15-30.
53. Lombard L, Rodas CA, Crous PW, Wingfield BD, Wingfield MJ (2009). Cylindrocladium species associated with dying Pinus cuttings. Persoonia 23: 41-47.
54. Lombard L, Zhou XD, Crous PW, Wingfield BD, Wingfield MJ (2010c). Calonectria species associated with cutting rot of Eucalyptus. Persoonia 24: 1-11.
55. Mason-Gamer R, Kellogg E (1996). Testing for phylogenetic conflict among molecular datasets in the tribe Tiriceae (Graminae). Systematic Biology 45: 524-545.
56. McNeill J, Stuessy TF, Turland NJ, Hörandl E (2005). XVII International Botanical Congress: preliminary mail vote and report of Congress action on nomenclature proposals. Taxon 54: 1057-1064.
57. Moncalvo JM, Wang HH, Hseu RS (1995). Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences. Mycologia 87: 223-238.
58. Morgan AP (1892). Two new genera of hyphomycetes. Botanical Gazette 17: 190-192.
59. Nirenburg HI (1981). A simplified method for identifying Fusarium spp. occurring on wheat. Canadian Journal of Botany 59: 1599-1609.
60. Nylander JAA (2004). MrModeltest v. 2. Programme distributed by the author. Evolutionary Biology Centre, Uppsala University.
61. Overmeyer C, Lünneman S, Wallburnn C von, Meinhardt F (1996). Genetic variability among isolates and sexual offspring of the plant pathogenic fungus Calonectria morganii on the basis of random amplification of polymorphic DNA (RAPD) and restriction fragment length polymorphism (RFLP). Current Microbiology 33: 249-255.
62. O'Donnell K, Cigelnik E (1997). Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7: 103-116.
63. O'Donnell K, Kistler HC, Cigelnik E, Ploetz RC (1998). Multiple evolutionary origins of the fungus causing Panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies. Proceedings of the National Academy of Science of the United States of America 95: 2044-2049.
64. Peerally A (1991). The classification and phytopathology of Cylindrocladium species. Mycotaxon 40: 367-366.
65. Polizzi G, Grasso FM, Vitale A, Aiello D (2007). First occurrence of Calonectria leaf spot on Mexican blue palm in Italy. Plant Disease 91: 1057.
66. Posada D, Crandall KA (1998). Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
67. Rayner RW (1970). A mycological colour chart. Commonwealth Mycological Institute, Kew, Surrey. British Mycological Society.
68. Risède J-M, Simoneau P (2001). Typing Cylindrocladium species by analysis of ribosomal DNA spacers polymorphism: application to field isolates from the banana rhizosphere. Mycologia 93: 494-504.
69. Risède J-M, Simoneau P (2004). Pathogenic and genetic diversity of soilborne isolates of Cylindrocladium from banana cropping systems. European Journal of Plant Pathology 110: 139-154.
70. Ronquist F, Heulsenbeck JP (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
71. Rossman AY (1979). Calonectria and its type species, C. daldiniana, a later synonym of C. pyrochroa. Mycotaxon 8: 321-328.
72. Rossman AY (1983). The phragmosporous species of Nectria and related genera. Mycological Papers 150: 1-164.
73. Rossman AY (1993). Holomorphic hypocrealean fungi: Nectria sensu stricto and telemorphs of Fusarium. In: The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics. (Reynolds DR, Taylor JW, eds). CAB International, Wallingford, U.K.: 149-160.
74. Rossman AY, Samuels GJ, Rogerson CT, Lowen R (1999). Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Studies in Mycology 42: 1-248.
75. Schoch CL, Crous PW, Polizzi G, Koike ST (2001a). Female fertility and single nucleotide polymorphism comparisons in Cylindrocladium pauciramosum. Plant Disease 85: 941-946.
76. Schoch CL, Crous PW, Wingfield BD, Wingfield MJ (1999). The Cylindrocladium candelabrum species complex includes four distinct mating populations. Mycologia 91: 286-298.
77. Schoch CL, Crous PW, Wingfield BD, Wingfield MJ (2001b). Phylogeny of Calonectria based on comparisons of β-tubulin DNA sequences. Mycological Research 105: 1045-1052.
78. Schoch CL, Crous PW, Cronright G, Witthuhn RC, El-Gholl NE, Wingfield BD (2000a). Recombination in Calonectria morganii and phylogeny with other heterothallic small-spored Calonectria species. Mycologia 92: 665-673.
79. Schoch CL, Crous PW, Wingfield MJ, Wingfield BD (2000b). Phylogeny of Calonectria and selected hypocrealean genera with cylindrical macroconidia. Studies in Mycology 45: 45-62.
80. Schoch CL, Sung G-H, López-Giráldez F, Townsend JP, Miadlikowska J, et al. (2009). The Ascomycota Tree of Life: A phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Systematic Biology 58: 224-239.
81. Schubert TS, El-Gholl NE, Alfieri SA, Schoulties CL (1989). Calonectria avesiculata sp. nov. Canadian Journal of Botany 67: 2414-2419.
82. Sober EK (1971). A macro-conidial form of Cylindrocladium theae occurring on glycerol-water agar. Georgia Academy of Science Bulletin 29: 98.
83. Sobers EK, Alfieri SA (1972). Species of Cylindrocladium and their hosts in Florida and Georgia. Proceedings of the Florida State Horticultural Society 85: 366-369.
84. Swofford DL (2002). PAUP*. Phylogenetic analysis using parsimony (* and other methods), v. 4.0b10. Computer programme. Sunderland, Massachusetts, U.S.A.: Sinauer Associates.
85. Taylor JW, Jacobson DJ, Kroken SM, Kasuga T, Geiser DM, et al. (2000). Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31: 21-32.
86. Victor D, Crous PW, Janse BJH, Wingfield MJ (1997). Genetic variation in Cylindrocladium floridanum and other morphologically similar Cylindrocladium species. Systemic and Applied Microbiology 20: 268-285.
87. Vilgalys R, Hester M (1990). Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.
88. Vitale A, Polizzi G (2008). First record of leaf spots and stem lesions on Pistacia lentiscus caused by Cylindrocladium pauciramosum and C. scoparium in Italy. Plant Pathology 57: 384.
89. White TJ, Burns T, Lee S, Taylor J (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications. (Innis MA, Gelfand DH, Snisky JJ, White TJ, eds) Academic Press, U.S.A.: 282-287.