DNA barcoding Cinnamomum osmophloeum Kaneh. Based on the partial non-coding ITS2 region of ribosomal genes

Journal of Food and Drug Analysis

Volumn 18, Issue 2, 2010, Pages 128-135

  Lee, Shih Chieh ^a   Chiou, Shu Jiau ^b,c   Yen, Jui Hung ^b   Lin, Tsai Yun ^c   Hsieh, Kun Ting ^a   Yang, Jeng Chuan ^d  

^a DA YEH UNIVERSITY   (Taiwan)

^b INDUSTRIAL TECHNOLOGY RESEARCH INSTITUTE   (Taiwan)

^c NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^d CHINESE CULTURE UNIVERSITY   (Taiwan)

Author keywords

Barcode; Chemotype; Cinnamomum osmophloeum Kaneh; Internal transcribed spacer

Indexed keywords

ALPHA MUUROLENE; BENZALDEHYDE; BENZYL ALCOHOL; BETA PHELLANDRENE; BETA PINENE; BORNYL ACETATE; CAMPHENE; CAMPHOR; CARYOPHYLLENE; CARYOPHYLLENE OXIDE; CHEMICAL COMPOUND; CINNAMALDEHYDE; CINNAMYL ACETATE; CINNAMYL ALCOHOL; ESSENTIAL OIL; ESTRAGOLE; GAMMA MUUROLENE; GERANIOL; GERANYL ACETATE; GUAIOL; INTERNAL TRANSCRIBED SPACER 2; ISOLEDENE; LIMONENE; LINALOOL; RIMUEN; SALICYLALDEHYDE; T CADINOL; TERPINEOL; UNCLASSIFIED DRUG; UNINDEXED DRUG; VERTICIOL;

ARTICLE; CHEMICAL COMPOSITION; CINNAMOMUM; CINNAMOMUM OSMOPHLOEUM KANEH; DISTILLATION; DNA BARCODING; DNA SEQUENCE; DRUG ISOLATION; GAS CHROMATOGRAPHY; GENE AMPLIFICATION; GENETIC STRAIN; GENETIC VARIABILITY; GEOGRAPHIC ORIGIN; MASS SPECTROMETRY; NATIVE SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYTOCHEMISTRY; PLANT GENE; PLANT LEAF; RIBOSOME; TAIWAN;

CINNAMOMUM OSMOPHLOEUM; CINNAMOMUM VERUM; DRYOBALANOPS;

EID: 77954769621     PISSN: 10219498     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (46)

1. Liu, Y. C., Lu, F. Y. and Ou, C. H. 1997. In "Trees of Taiwan". Vol. 1, pp. 79. Council of Agriculture, Executive Yuan, Taipei, Taiwan.
2. Boufford, D. E., Hsieh, C. F., Huang, T. C., Kuoh, C. S., Ohashi, H., Peng, C. I., Tsai, J. L. and Yang, K. C. 2003. In "Flora of Taiwan". Vol. 2, pp. 445-446. National Science Council, Taipei, Taiwan.
3. Cheng, S. S., Liu, J. Y., Huang, C. G., Hsui, Y. R., Chen, W. J. and Chang, S. T. 2009. Insecticidal activities of leaf essential oils from Cinnamomum osmophloeum against three mosquito species. Bioresour. Technol. 100: 457-464.
4. Cheng, S. S., Liu, J. Y., Lin, C. Y., Hsui, Y. R., Lu, M. C., Wu, W. J. and Chang, S. T. 2008. Terminating red imported fire ants using Cinnamomum osmophloeum leaf essential oil. Bioresour. Technol. 99: 889-893.
5. Cheng, S. S., Liu, J. Y., Tsai, K. H., Chen, W. J. and Chang, S. T. 2004. Chemical composition and mosquito larvicidal activity of essential oils from leaves of different Cinnamomum osmophloeum clones. J. Agric. Food Chem. 52: 4395-4400.
6. Chang, C. W., Chang, W. L., Chang, S. T. and Cheng, S. S. 2008. Antibacterial activities of plant essential oils against Legionella pneumophila. Water Res. 42: 278-286. (Pubitemid 350296229)
7. Chang, S. T., Chen, P. F. and Chang, S. C. 2001. Antibacterial activity of leaf essential oils and their constituents from Cinnamomum osmophloeum. J. Ethnopharmacol. 77: 123-127.
8. Cheng, S. S., Liu, J. Y., Hsui, Y. R. and Chang, S. T. 2006. Chemical polymorphism and antifungal activity of essential oils from leaves of different clones of indigenous cinnamon (Cinnamomum osmophloeum). Bioresour. Technol. 97: 306-312.
9. Wang, S. Y., Chen, P. F. and Chang, S. T. 2005. Antifungal activities of essential oils and their constituents from indigenous cinnamon (Cinnamomum osmophloeum) leaves against wood decay fungi. Bioresour. Technol. 96: 813-818.
10. Chao, L. K., Hua, K. F., Hsu, H. Y., Cheng, S. S., Liu, J. Y. and Chang, S. T. 2005. Study on the anti-inflammatory activity of essential oil from leaves of Cinnamomum osmophloeum. J. Agric. Food Chem. 53: 7274-7278.
11. Chao, L. K., Hua, K. F., Hsu, H. Y., Cheng, S. S., Lin, I. F., Chen, C. J., Chen, S. T. and Chang, S. T. 2008. Cinnamaldehyde inhibits pro-inflammatory cytokines secretion from monocytes/macrophages through suppression of intracellular signaling. Food Chem. Toxicol. 46: 220-231.
12. Fang, S. H., Rao, Y. K. and Tzeng, Y. M. 2005. Inhibitory effects of flavonol glycosides from Cinnamomum osmophloeum on inflammatory mediators in LPS/IFN-gamma-activated murine macrophages. Bioorg. Med. Chem. 13: 2381-2388.
13. Rao, Y. K., Fang, S. H. and Tzeng, Y. M. 2007. Evaluation of the anti-inflammatory and anti-proliferation tumoral cells activities of Antrodia camphorata, Cordyceps sinensis, and Cinnamomum osmophloeum bark extracts. J. Ethnopharmacol. 114: 78-85.
14. Shen, Y. C., Chou, C. J., Wang, Y. H., Chen, C. F., Chou, Y. C. and Lu, M. K. 2004. Anti-inflammatory activity of the extracts from mycelia of Antrodia camphorata cultured with water-soluble fractions from five different Cinnamomum species. FEMS Microbiol. Lett. 231: 137-143.
15. Tung, Y. T., Chua, M. T., Wang, S. Y. and Chang, S. T. 2008. Anti-inflammation activities of essential oil and its constituents from indigenous cinnamon (Cinnamomum osmophloeum) twigs. Bioresour. Technol. 99: 3908-3913.
16. Chua, M. T., Tung, Y. T. and Chang, S. T. 2008. Antioxidant activities of ethanolic extracts from the twigs of Cinnamomum osmophloeum. Bioresour. Technol. 99: 1918-1925.
17. Lee, H. C., Chen, S. S., Liu, J. Y. and Chang, S. T. 2003. Chemical polymorphism of leaf essential oils from different geographical clones of indigenous cinnamon (Cinnamomum osmophloeum). Q. J. Chin. Fore. 36: 411-422.
18. Subash-Babu, P., Prabuseenivasan, S. and Ignacimuthu, S. 2007. Cinnamaldehyde - a potential antidiabetic agent. Phytomedicine 14: 15-22.
19. Liao, B. C., Hsieh, C. W., Liu, Y. C., Tzeng, T. T., Sun, Y. W. and Wung, B. S. 2008. Cinnamaldehyde inhibits the tumor necrosis factor-alpha-induced expression of cell adhesion molecules in endothelial cells by suppressing NF-kappaB activation: effects upon IkappaB and Nrf2. Toxicol. Appl. Pharmacol. 229: 161-171.
20. Chao, L. K., Hua, K. F., Hsu, H. Y., Cheng, S. S., Lin, I. F., Chen, C. J., Chen, S. T. and Chang, S. T. 2008. Cinnamaldehyde inhibits pro-inflammatory cytokines secretion from monocytes/macrophages through suppression of intracellular signaling. Food Chem. Toxicol. 46: 220-231.
21. Youn, H. S., Lee, J. K., Choi, Y. J., Saitoh, S. I., Miyake, K., Hwang, D. H. and Lee, J. Y. 2008. Cinnamaldehyde suppresses toll-like receptor 4 activation mediated through the inhibition of receptor oligomerization. Biochem. Pharmacol. 75: 494-502.
22. Alvarez, I. and Wendel, J. F. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogenet. Evol. 29: 417-434.
23. Baldwin, B. G. 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA: an example from the comositae. Mol. Phylogenet. Evol. 1: 3-16.
24. Hillis, D. M. and Dixon, M. T. 1991. Ribosomal DNA: molecular evolution and phylogenetic inference. Q. Rev. Biol. 66: 411-453.
25. White, T. J., Bruns, T., Lee, S. and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In "PCR protocols: a guide to methods and applications." pp. 315-322. Innis, M. A., Gelfand, D. H., Sninsky, J. J. and White, T. J. eds. Academic Press, New York, U. S. A.
26. Chiou, S. J., Yen, J. H., Fang, C. L., Chen, H. L. and Lin, T. Y. 2007. Authentication of medicinal herbs using PCR-amplified ITS2 with specific primers. Planta Med. 73: 1421-1426.
27. Maruyama, T., Sugimoto, N., Kuroyanagi, M., Kim, I. H., Kamakura, H., Kawasaki, T., Fujita, M., Shimada, H., Yamamoto, Y., Tada, A., Yamazaki, T. and Goda, Y. 2007. Authentication and chemical study of isodonis herba and isodonis extracts. Chem. Pharm. Bull. 55: 1626-1630.
28. Xue, H. G., Zhou, S. D., He, X. J. and Yu, Y. 2007. Molecular authentication of the traditional dai medicinal plant Croton caudatus. Planta Med. 73: 611-613. (Pubitemid 46984854)
29. Bailey, C. D., Carr, T. G., Harris, S. A. and Hughes, C. E. 2003. Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes. Mol. Phylogenet. Evol. 29: 435-455.
30. Baldwin, B. G., Sanderson, M. J., Porter, J. M., Wojciechowski, M. F., Campbell, C. S. and Donoghue, M. J. 1995. The ITS region of nuclear ribosomal DNA: A valuable source of evidence on angiosperm phylogeny. Ann. Mo. Bot. Gard. 82: 247-277.
31. Cubero, O. F., Crespo, A., Fatehi, J. and Bridge, P. D. 1999. DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi. Plant Syst. Evol. 216: 243-249.
32. Kojoma, M., Kurihara, K., Yamada, K., Sekita, S., Satake, M. and Iida, O. 2002. Genetic identification of cinnamon (Cinnamomum spp.) based on the trnL-trnF chloroplast DNA. Planta Med. 68: 94-96. (Pubitemid 34113604)
33. Armstrong, K. F. and Ball, S. L. 2005. DNA barcodes for biosecurity: invasive species identification. Philos. Trans. R. Soc. Lond., B., Biol. Sci. 360: 1813-1823.
34. Sucher, N. J. and Carles, M. C. 2008. Genome-based approaches to the authentication of medicinal plants. Planta Med. 74: 603-623.
35. Yancy, H. F., Zemlak, T. S., Mason, J. A., Washington, J. D., Tenge, B. J., Nguyen, N. L., Barnett, J. D., Savary, W. E., Hill, W. E., Moore, M. M., Fry, F. S., Randolph, S. C., Rogers, P. L. and Hebert, P. D. 2008. Potential use of DNA barcodes in regulatory science: Applications of the regulatory fish encyclopedia. J. Food Prot. 71: 210-217.
36. Ben-David, T., Melamed, S., Gerson, U. and Morin, S. 2007. ITS2 sequences as barcodes for identifying and analyzing spider mites (Acari: Tetranychidae). Exp. Appl. Acarol. 41: 169-181.
37. Chase, M. W., Salamin, N., Wilkinson, M., Dunwell, J. M., Kesanakurthi, R. P., Haidar, N. and Savolainen, V. 2005. Land plants and DNA barcodes: short-term and long-term goals. Philos. Trans. R. Soc. Lond., B., Biol. Sci. 360: 1889-1895.
38. Cywinska, A., Hunter, F. F. and Hebert, P. D. 2006. Identifying Canadian mosquito species through DNA barcodes. Med. Vet. Entomol. 20: 413-424.
39. Kress, W. J., Wurdack, K. J., Zimmer, E. A., Weigt, L. A. and Janzen, D. H. 2005. Use of DNA barcodes to identify flowering plants. Proc. Natl. Acad. Sci. U. S. A. 102: 8369-8374.
40. Yoo, H. S., Eah, J. Y., Kim, J. S., Kim, Y. J., Min, M. S., Paek, W. K., Lee, H. and Kim, C. B. 2006. DNA barcoding Korean birds. Mol. Cells 22: 323-327.
41. Hu. T. W. 1992. Distribution, collection and the germplasm preservation of Cinnamomum osmophloeum Kaneh. In "Monograph of Cinnamomum osmophloeum Kaneh." pp. 1-6. Lin, T. P. ed. Taiwan Forestry Research Institute. Taipei, Taiwan. (Article in Chinese)
42. Kumar, S., Tamura, K. and Nei, M. 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief. Bioinformatics 5: 150-163.
43. Xia, Q., Zhao, K. J., Huang, Z. G., Zhang, P., Dong, T. T., Li, S. P. and Tsim, K. W. 2005. Molecular genetic and chemical assessment of Rhizoma curcumae in China. J. Agric. Food Chem. 53: 6019-6026.
44. Yip, P. Y. and Kwan, H. S. 2006. Molecular identification of Astragalus membranaceus at the species and locality levels. J. Ethnopharmacol. 106: 222-229.
45. Zhang, X., Xu, Q., Xiao, H., Liang, X., Huang, L. and Liu, J. 2006. Study on authentication of Astragalus membranaceus by DNA fingerprints. World Sci. Technol. 8: 33-36. (Article in Chinese)
46. Hebert, P. D., Cywinska, A., Ball, S. L. and deWaard, J. R. 2003. Biological identifications through DNA barcodes. Proc. Biol. Sci. 270: 313-321.