Proton cycling, buffering, and reaction stoichiometry in natural waters

Marine Chemistry

Volumn 121, Issue 1-4, 2010, Pages 246-255

  Hofmann, A F ^a,d   Middelburg, J J ^a,b   Soetaert, K ^a   A Wolf Gladrow, D ^c   Meysman, F J R ^a,d  

^a NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

^b UTRECHT UNIVERSITY   (Netherlands)

^c ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

^d VRIJE UNIVERSITEIT BRUSSEL   (Belgium)

Author keywords

Acid base chemistry; Buffer factor; Buffering; Effects of biogeochemistry on proton cycling; Ionization fractions; PH modeling; Proton cycling; Proton cycling sensitivity; Reaction stoichiometry; Stoichiometric coefficient for the proton

Indexed keywords

ACIDIFICATION; ALKALINITY; BIOGEOCHEMISTRY; BUFFERING; ENVIRONMENTAL DISTURBANCE; EXPERIMENTAL STUDY; IONIZATION; PH; STOICHIOMETRY;

EID: 77954757651     PISSN: 03044203     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.marchem.2010.05.004     Document Type: Article

References (44)

1. Archer D. Fate of fossil fuel CO2 in geologic time. Journal of Geophysical Research-Oceans 2005, 110(C9).
2. Archer D., Eby M., Brovkin V., Ridgwell A., Cao L., Mikolajewicz U., Caldeira K., Matsumoto K., Munhoven G., Montenegro A., Tokos K. Atmospheric lifetime of fossil fuel carbon dioxide. Annual Review of Earth and Planetary Sciences 2009, 37(1):117-134.
3. 3. Global Biogeochemical Cycles 1998, 12(2):259-276.
4. Aris R., Mah R.H.S. Independence of chemical reactions. Industrial & Engineering Chemistry Fundamentals 1963, 2(2). 90-94&3.
5. Ben-Yaakov S. A method for calculating the in situ pH of seawater. Limnology and Oceanography 1970, 15(2):326-328.
6. Boudreau B.P. A steady-state diagenetic model for dissolved carbonate species and pH in the porewaters of oxic and suboxic sediments. Geochimica et Cosmochimica Acta 1987, 51(7):1985-1996.
7. Boudreau B.P. Diagenetic models and their implementation 1996, Springer.
8. Culberson C.H. Calculation of the in-situ pH of seawater. Limnology and Oceanography 1980, 25(1):150-152.
9. Dickson A.G. An exact definition of total alkalinity and a procedure for the estimation of alkalinity and total inorganic carbon from titration data. Deep-Sea Research Part A: Oceanographic Research Papers 1981, 28(6):609-623.
10. 2 measurements. PICES Special Publications 2007, 3:1-191.
11. DiToro D.M. Combining chemical equilibrium and phytoplankton models - a general methodology. Modelling Biochemical Processes on Aquatic Ecosystems 1976, 233-255. Science, Ann Arbor. R.P. Canale (Ed.).
12. Doney S.C., Mahowald N., Lima I., Feely R.A., Mackenzie F.T., Lamarque J.-F., Rasch P.J. Impact of anthropogenic atmospheric nitrogen and sulfur deposition on ocean acidification and the inorganic carbon system. Proceedings of the National Academy of Sciences 2007, 104(37):14580-14585.
13. Dore J.E., Lukas R., Sadler D.W., Church M.J., Karl D.M. Physical and biogeochemical modulation of ocean acidification in the central North Pacific. Proceedings of the National Academy of Sciences of the United States of America 2009, 106(30):12235-12240.
14. Duce R.A., LaRoche J., Altieri K., Arrigo K.R., Baker A.R., Capone D.G., Cornell S., Dentener F., Galloway J., Ganeshram R.S., Geider R.J., Jickells T., Kuypers M.M., Langlois R., Liss P.S., Liu S.M., Middelburg J.J., Moore C.M., Nickovic S., Oschlies A., Pedersen T., Prospero J., Schlitzer R., Seitzinger S., Sorensen L.L., Uematsu M., Ulloa O., Voss M., Ward B., Zamora L. Impacts of atmospheric anthropogenic nitrogen on the open ocean. Science 2008, 320(5878):893-897.
15. Egleston E.S., Sabine C.L., Morel F.M.M. Revelle revisited: buffer factors that quantify the response of ocean chemistry to changes in DIC and alkalinity. Global Biogeochemical Cycles 2010, 24. GB1002. 10.1029/2008GB003407.
16. Follows M.J., Ito T., Dutkiewicz S. On the solution of the carbonate chemistry system in ocean biogeochemistry models. Ocean Modelling 2006, 12(3-4):290-301.
17. 2 system in seawater. Journal of Marine Systems 1994, 5:111-118.
18. 2 on shellfish calcification. Geophysical Research Letters 2007, 34.
19. Guinotte J.M., Fabry V.J. Ocean acidification and its potential effects on marine ecosystems. Year in Ecology and Conservation Biology 2008, 1134:320-342.
20. Hofmann A.F., Meysman F.J.R., Soetaert K., Middelburg J.J. A step-by-step procedure for pH model construction in aquatic systems. Biogeosciences 2008, 5(1):227-251.
21. Hofmann A., Soetaert K., Middelburg J.J., Meysman F.J.R. pH modelling in aquatic systems with time-variable acid-base dissociation constants applied to the turbid, tidal Scheldt estuary. Biogeosciences 2009, 6:1539-1561.
22. Hofmann, A. F., Middelburg, J. J., Soetaert, K., Wolf-Gladrow, D. A., Meysman, F. J. R., 2009b. Buffering, stoichiometry and the sensitivity of pH to biogeochemical and physical processes: a proton-based model perspective. In: Quantifying the influences of biogeochemical processes on pH of natural waters, A.F. Hofmann, PhD thesis, URL , 129-151. http://igitur-archive.library.uu.nl/dissertations/2009-0513-200343/UUindex.html.
23. Hofmann A.F., Soetaert K., Middelburg J.J., Meysman F.J.R. AquaEnv - an Aquatic acid-base modelling Environment in R. Aquatic Geochemistry 2010, Software: http://cran.r-project.org/package=AquaEnv7. 10.1007/s10498-009-9084-1.
24. IPCC, 2007. Climate Change 2007: Synthesis Report. Contributions of Working Groups I, II, and III to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change [Core Writing team, Pachauri, R.K and Reisinger, A. (eds.)]. IPCC, Geneva, Switzerland.
25. Kleypas J.A., Feely R.A., Fabry V.J., Langdon C., Sabine C.L., Robbins L.L. Impacts of Ocean Acidification on Coral Reefs and Other Marine Calcifiers: A Guide for Future Research, report of a workshop held 18-20 April 2005, St. Petersburg, FL, sponsored by NSF, NOAA, and the U.S. Geological Survey. Tech. rep.1 2006.
26. Luff R., Haeckel M., Wallmann K. Robust and fast FORTRAN and MATLAB® libraries to calculate pH distributions in marine systems. Computers & Geosciences 2001, 27(2):157-169.
27. Meysman, F., 2001. Modelling the influence of ecological interactions on reactive transport processes in sediments. Ph.D. thesis, Netherlands Institute of Ecology.
28. Morel F.M., Hering J.G. Principles and applications of aquatic chemistry 1993, John Wiley & sons.
29. Morse J.W. The kinetics of calcium carbonate dissolution and precipitation. Mineral. Soc. Am. 1983, 227-264. R.J. Reeder (Ed.).
30. Mucci A. The solubility of calcite and aragonite in seawater at various salinities, temperatures, and one atmosphere total pressure. American Journal of Science 1983, 283(7):780-799.
31. Olander D.R. Simultaneous mass transfer and equilibrium chemical reaction. Aiche Journal 1960, 6(2):233-239.
32. Orr J.C., Fabry V.J., Aumont O., Bopp L., Doney S.C., Feely R.A., Gnanadesikan A., Gruber N., Ishida A., Joos F., Key R.M., Lindsay K., Maier-Reimer E., Matear R., Monfray P., Mouchet A., Najjar R.G., Plattner G.K., Rodgers K.B., Sabine C.L., Sarmiento J.L., Schlitzer R., Slater R.D., Totterdell I.J., Weirig M.F., Yamanaka Y., Yool A. Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms. Nature 2005, 437(7059):681-686.
33. R Development Core Team R: a language and environment for statistical computing 2008, R Foundation for Statistical Computing, Vienna, Austria, URL http://www.r-project.org.
34. Roy R.N., Roy L.N., Vogel K.M., PorterMoore C., Pearson T., Good C.E., Millero F.J., Campbell D.M. The dissociation constants of carbonic acid in seawater at salinities 5 to 45 and temperatures 0 to 45 degrees C (Erratum: Mar. Chem., vol. 44, p. 183, 1996). Marine Chemistry 1993, 44:249-267.
35. Saaltink M.W., Ayora C., Carrera J. A mathematical formulation for reactive transport that eliminates mineral concentrations. Water Resources Research 1998, 34(7):1649-1656.
36. 2 parameters in the northeast Atlantic subtropical gyre at the ESTOC site. Global Biogeochemical Cycles 2007, 21(1).
37. Skoog D.A., West D.M. Fundamentals of analytical chemistry 1982, Holt-Saunders International Editions, Holt-Saunders.
38. Soetaert K., Petzold T., Setzer R.W. Solving differential equations in R: package deSolve. Journal of Statistical Software 2010, 33(9):1-25.
39. Stumm W., Morgan J.J. Aquatic chemistry: chemical equilibria and rates in natural waters 1996, Wiley Interscience, New York.
40. Weiss R.F. Solubility of nitrogen, oxygen and argon in water and seawater. Deep-Sea Research 1970, 17(4):721-735.
41. Wolf-Gladrow D.A., Zeebe R.E., Klaas C., Koertzinger A., Dickson A.G. Total alkalinity: the explicit conservative expression and its application to biogeochemical processes. Marine Chemistry 2007.
42. Wootton J.T., Pfister C.A., Forester J.D. Dynamic patterns and ecological impacts of declining ocean pH in a high resolution multi-year dataset. Proceedings of the National Academy of Sciences 2008, 105(48):18848-18853.
43. 2 in seawater: equilibrium, kinetics, isotopes. Elsevier Oceanography Series 2001, No. 65. Elsevier. 1st Edition.
44. Zeebe R.E., Zachos J.C., Caldeira K., Tyrrell T. Oceans - carbon emissions and acidification. Science 2008, 321(5885):51-52.