Identification of microRNAs involved in the host response to enterovirus 71 infection by a deep sequencing approach

Journal of Biomedicine and Biotechnology

Volumn 2010, Issue , 2010, Pages

  Cui, Lunbiao ^a   Guo, Xiling ^a   Qi, Yuhua ^a,b   Qi, Xian ^a   Ge, Yiyue ^a   Shi, Zhiyang ^a   Wu, Tao ^a   Shan, Jun ^a   Shan, Yunfeng ^a   Zhu, Zheng ^a   Wang, Hua ^a  

^a Jiangsu Provincial Center for Diseases Prevention and Control   (China)

^b SOUTHEAST UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MESSENGER RNA;

ARTICLE; ENTEROVIRUS 71 INFECTION; ENTEROVIRUS INFECTION; GENE IDENTIFICATION; GENE SEQUENCE; HUMAN; HUMAN CELL; IMMUNE RESPONSE; NONHUMAN; VIRUS REPLICATION; DNA SEQUENCE; DOWN REGULATION; ENTEROVIRUS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; HOST PATHOGEN INTERACTION; METABOLISM; METHODOLOGY; PHYSIOLOGY; REPRODUCIBILITY; TUMOR CELL LINE; UPREGULATION; VIROLOGY;

HUMAN ENTEROVIRUS 71;

CELL LINE, TUMOR; DOWN-REGULATION; ENTEROVIRUS A, HUMAN; ENTEROVIRUS INFECTIONS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; HOST-PATHOGEN INTERACTIONS; HUMANS; MICRORNAS; REPRODUCIBILITY OF RESULTS; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; UP-REGULATION; VIRUS REPLICATION;

EID: 77954549997     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/2010/425939     Document Type: Article

References (37)

1. McMinn P., Stratov I., Nagarajan L., Davis S., Neurological manifestations of enterovirus 71 infection in children during an outbreak of hand, foot, and mouth disease in Western Australia Clinical Infectious Diseases 2001 32 2 236 242
2. Portolani M., Bartoletti A. M., Pietrosemoli P., Non-specific febrile illness by Coxsackievirus A16 in a 6-day-old newbornMalattia febbrile aspecifica da Coxackievirus A16 in un neonato di 6 giorni Minerva Pediatrica 2004 56 3 341 347
3. Chang L.-Y., Huang L.-M., Gau S. S.-F., Neurodevelopment and cognition in children after enterovirus 71 infection The New England Journal of Medicine 2007 356 12 1226 1234
4. Huang C.-C., Liu C.-C., Chang Y.-C., Chen C.-Y., Wang S.-T., Yeh T.-F., Neurologic complications in children with enterovirus 71 infection The New England Journal of Medicine 1999 341 13 936 942
5. Chang L.-Y., Lin T.-Y., Huang Y.-C., Comparison of enterovirus 71 and coxsackievirus A16 clinical illnesses during the Taiwan enterovirus epidemic, 1998 Pediatric Infectious Disease Journal 1999 18 12 1092 1096
6. Ding N.-Z., Wang X.-M., Sun S.-W., Song Q., Li S.-N., He C.-Q., Appearance of mosaic enterovirus 71 in the 2008 outbreak of China Virus Research 2009 145 1 157 161
7. Carrington J. C., Ambros V., Role of microRNAs in plant and animal development Science 2003 301 5631 336 338
8. Kurzyska-Kokorniak A., Jackowiak P., Figlerowicz M., Figlerowicz M., Human- and virus-encoded microRNAs as potential targets of antiviral therapy Mini-Reviews in Medicinal Chemistry 2009 9 8 927 937
9. Jopling C. L., Yi M., Lancaster A. M., Lemon S. M., Sarnow P., Molecular biology: modulation of hepatitis C virus RNA abundance by a liver-specific microRNA Science 2005 309 5740 1577 1581
10. Huang J., Wang F., Argyris E., Cellular microRNAs contribute to HIV-1 latency in resting primary CD4+ T lymphocytes Nature Medicine 2007 13 10 1241 1247
11. Pfeffer S., Zavolan M., Grsser F. A., Identification of virus-encoded microRNAs Science 2004 304 5671 734 736
12. Lewis B. P., Burge C. B., Bartel D. P., Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 2005 120 1 15 20
13. Grimson A., Farh K. K.-H., Johnston W. K., Garrett-Engele P., Lim L. P., Bartel D. P., MicroRNA targeting specificity in mammals: determinants beyond seed pairing Molecular Cell 2007 27 1 91 105
14. Friedman R. C., Farh K. K.-H., Burge C. B., Bartel D. P., Most mammalian mRNAs are conserved targets of microRNAs Genome Research 2009 19 1 92 105
15. Maragkakis M., Alexiou P., Papadopoulos G. L., Accurate microRNA target prediction correlates with protein repression levels BMC Bioinformatics 2009 10, article 295
16. Maragkakis M., Reczko M., Simossis V. A., DIANA-microT web server: elucidating microRNA functions through target prediction Nucleic Acids Research 2009 37, web server issue W273 W276
17. Lodes M. J., Caraballo M., Suciu D., Munro S., Kumar A., Anderson B., Detection of cancer with serum miRNAs on an oligonucleotide microarray PLoS ONE 2009 4 7, article e6229
18. Schmittgen T. D., Livak K. J., Analyzing real-time PCR data by the comparative C method Nature Protocols 2008 3 6 1101 1108
19. Kal A. J., van Zonneveld A. J., Benes V., Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources Molecular Biology of the Cell 1999 10 6 1859 1872
20. Shih S.-R., Stollar V., Lin J.-Y., Chang S.-C., Chen G.-W., Li M.-L., Identification of genes involved in the host response to enterovirus 71 infection Journal of NeuroVirology 2004 10 5 293 304
21. Leong W. F., Chow V. T. K., Transcriptomic and proteomic analyses of rhabdomyosarcoma cells reveal differential cellular gene expression in response to enterovirus 71 infection Cellular Microbiology 2006 8 4 565 580
22. Chen C., Ridzon D. A., Broomer A. J., Real-time quantification of microRNAs by stem-loop RT-PCR Nucleic Acids Research 2005 33 20, article e179
23. Sempere L. F., Freemantle S., Pitha-Rowe I., Moss E., Dmitrovsky E., Ambros V., Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation Genome Biology 2004 5 3, article R13
24. Cummins J. M., He Y., Leary R. J., The colorectal microRNAome Proceedings of the National Academy of Sciences of the United States of America 2006 103 10 3687 3692
25. Liu C.-G., Calin G. A., Meloon B., An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues Proceedings of the National Academy of Sciences of the United States of America 2004 101 26 9740 9744
26. Nelson P. T., Baldwin D. A., Scearce L. M., Oberholtzer J. C., Tobias J. W., Mourelatos Z., Microarray-based, high-throughput gene expression profiling of microRNAs Nat Methods 2004 1 2 155 161
27. Moxon S., Jing R., Szittya G., Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening Genome Research 2008 18 10 1602 1609
28. Glazov E. A., Cottee P. A., Barris W. C., Moore R. J., Dalrymple B. P., Tizard M. L., A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach Genome Research 2008 18 6 957 964
29. Goff L. A., Davila J., Swerdel M. R., Ago2 immunoprecipitation identifies predicted MicroRNAs in human embryonic stem cells and neural precursors PLoS ONE 2009 4 9, article e7192
30. Lu C., Kulkarni K., Souret F. F., MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant Genome Research 2006 16 10 1276 1288
31. Liu X., Wang T., Wakita T., Yang W., Systematic identification of microRNA and messenger RNA profiles in hepatitis C virus-infected human hepatoma cells Virology 2010 398 1 57 67
32. Godshalk S. E., Bhaduri-McIntosh S., Slack F. J., Epstein-Barr virus-mediated dysregulation of human microRNA expression Cell Cycle 2008 7 22 3595 3600
33. Wang F.-Z., Weber F., Croce C., Liu C.-G., Liao X., Pellett P. E., Human cytomegalovirus infection alters the expression of cellular MicroRNA species that affect its replication Journal of Virology 2008 82 18 9065 9074
34. Tang W.-F., Yang S.-Y., Wu B.-W., Reticulon 3 binds the 2C protein of enterovirus 71 and is required for viral replication Journal of Biological Chemistry 2007 282 8 5888 5898
35. Yoon M., Spear P. G., Disruption of adherens junctions liberates nectin-1 to serve as receptor for herpes simplex virus and pseudorabies virus entry Journal of Virology 2002 76 14 7203 7208
36. Ding X. R., Yang J., Sun D. C., Lou S. K., Wang S. Q., Whole genome expression profiling of hepatitis B virus-transfected cell line reveals the potential targets of anti-HBV drugs Pharmacogenomics Journal 2008 8 1 61 70
37. Rotbart H. A., Hayden F. G., Picornavirus infections: a primer for the practitioner Archives of Family Medicine 2000 9 9 913 920