Abstracts versus full texts and patents: A quantitative analysis of biomedical entities

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 6107 LNCS, Issue , 2010, Pages 152-165

  Müller, Bernd ^a,b   Klinger, Roman ^a   Gurulingappa, Harsha ^a,b   Mevissen, Heinz Theodor ^a   Hofmann Apitius, Martin ^a,b   Fluck, Juliane ^a   Friedrich, Christoph M ^a  

^a FRAUNHOFER INSTITUTE FOR ALGORITHMS AND SCIENTIFIC COMPUTING SCAI   (Germany)

^b Rheinische Friedrich Wilhelms Universität   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL ENTITY; DOMAIN SPECIFIC; INFORMATION DISTRIBUTIONS; JOURNAL ARTICLES; LIFE-SCIENCES; MEDLINE; NAMED ENTITY RECOGNITION; QUANTITATIVE ANALYSIS; SEMANTIC SEARCH;

ABSTRACTING; CHARACTER RECOGNITION; DRUG PRODUCTS; INFORMATION RETRIEVAL; PATENTS AND INVENTIONS;

NATURAL LANGUAGE PROCESSING SYSTEMS;

EID: 77954438560     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-13084-7_12     Document Type: Conference Paper

References (19)

1. Fluck, J., Mevissen, H.T., Dach, H., Oster, M., Hofmann-Apitius, M.: ProMiner: recognition of human gene and protein names using regularly updated dictionaries. In: Proceedings of the Second BioCreative Challenge Evaluation Workshop, pp. 149-151 (2007) (last accessed August 2009)
2. Friedrich, C.M., Dach, H., Gattermayer, T., Engelbrecht, G., Benkner, S., Hofmann-Apitius, M.: @neuLink: A service-oriented application for biomedical knowledge discovery. In: Proceedings of the HealthGrid 2008, pp. 165-172 (2008) (last accessed August 2009)
3. Gospodnetic, O., Hatcher, E.: Lucene In Action. Action Series. Manning Publications Co., Greenwich (2005)
4. Guha, R., McCool, R., Miller, E.: Semantic search. In: WWW 2003: Proceedings of the 12th international conference on World Wide Web, pp. 700-709. ACM, New York (2003)
5. Gurulingappa, H., Müller, B., Klinger, R., Mevissen, H.-T., Hofmann-Apitius, M., Fluck, J., Friedrich, C.M.: Patent retrieval in chemistry based on semantically tagged named entities. In: Voorhees, E.M., Buckland, L.P. (eds.) The Eighteenth Text RETrieval Conference (TREC 2009) Proceedings, Gaithersburg, Maryland, USA (November 2009)
6. Hanisch, D., Fundel, K., Mevissen, H.-T., Zimmer, R., Fluck, J.: Prominer: rule-based protein and gene entity recognition. BMC Bioinformatics 6(suppl. 1), S14 (2005)
7. Hirschman, L., Colosimo, M., Morgan, A., Yeh, A.: Overview of biocreative task 1b: normalized gene lists. BMC Bioinformatics 6(suppl. 1), S11 (2005)
8. Hofmann-Apitius, M., Fluck, J., Furlong, L., Fornes, O., Kolářik, C., Hanser, S., Boeker, M., Schulz, S., Sanz, F., Klinger, R., Mevissen, T., Gattermayer, T., Oliva, B., Friedrich, C.M.: Knowledge environments representing molecular entities for the virtual physiological human. Philos. Transact. A Math. Phys. Eng. Sci. 366(1878), 3091-3110 (2008)
9. Kanehisa, M., Goto, S.: Kegg: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28(1), 27-30 (2000)
10. Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K.F., Itoh,M., Kawashima, S., Katayama, T., Araki, M., Hirakawa, M.: From genomics to chemical genomics: new developments in kegg. Nucleic Acids Res. 34(Database issue), D354-D357 (2006)
11. Klinger, R., Friedrich, C.M., Fluck, J., Hofmann-Apitius, M.: Named Entity Recognition with Combinations of Conditional Random Fields. In: Proceedings of the Second BioCreative Challenge Evaluation Workshop, Madrid, Spain, April 2007, pp. 89-91 (2007)
12. Klinger, R., Friedrich, C.M., Mevissen, H.T., Fluck, J., Hofmann-Apitius, M., Furlong, L.I., Sanz, F.: Identifying gene-specific variations in biomedical text. J. Bioinform. Comput. Biol. 5(6), 1277-1296 (2007)
13. Klinger, R., Kolářik, C., Fluck, J., Hofmann-Apitius, M., Friedrich, C.M.: Detection of IUPAC and IUPAC-like Chemical Names. Bioinformatics 24(13), i268-i276 (2008); Proceedings of the International Conference Intelligent Systems for Molecular Biology (ISMB)
14. Kolářik, C., Klinger, R., Friedrich, C.M., Hofmann-Apitius, M., Fluck, J.: Chemical names: Terminological resources and corpora annotation. In:Workshop on Building and evaluating resources for biomedical text mining, volume 6th edition of the Language Resources and Evaluation Conference, Marrakech, Morocco (2008)
15. Schuemie, M.J.,Weeber, M., Schijvenaars, B.J.A., van Mulligen, E.M., van der Eijk, C.C., Jelier, R., Mons, B., Kors, J.A.: Distribution of information in biomedical abstracts and full-text publications. Bioinformatics 20(16), 2597-2604 (2004)
16. Shah, P.K., Perez-Iratxeta, C., Bork, P., Andrade, M.A.: Information extraction from full text scientific articles: where are the keywords? BMC Bioinformatics 4, 20 (2003)
17. Verspoor, K., Bretonnel Cohen, K., Hunter, L.: The textual characteristics of traditional and open access scientific journals are similar. BMC Bioinformatics 10(1), 183 (2009)
18. White, M.J.: Espacenet, europe's network of patent databases. Issues in Science & Technology Librarianship 47 (2006)
19. Wishart, D.S., Knox, C., Guo, A.C., Cheng, D., Shrivastava, S., Tzur, D., Gautam, B., Hassanali, M.: Drugbank: a knowledgebase for drugs, drug actions and drug targets. Nucleic Acids Res. 36(Database issue), D901-D906 (2008)