메뉴 건너뛰기




Volumn 129, Issue 3, 2010, Pages 271-279

Population structure and phenotypic variation of a spring barley world collection set up for association studies

Author keywords

Barley; Genetic diversity; Heritability; Hordeum vulgare; Population structure; SSR markers

Indexed keywords

HORDEUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE;

EID: 77954428343     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2009.01725.x     Document Type: Article
Times cited : (43)

References (53)
  • 3
    • 0036008763 scopus 로고    scopus 로고
    • Plant molecular diversity and applications to genomics
    • Buckler E S, Thornsberry J M. Plant molecular diversity and applications to genomics. Curr. Opin. Plant Biol. 2002, 5:107-111.
    • (2002) Curr. Opin. Plant Biol. , vol.5 , pp. 107-111
    • Buckler, E.S.1    Thornsberry, J.M.2
  • 4
    • 33644774522 scopus 로고    scopus 로고
    • Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare
    • Caldwell K S, Russell J, Langridge P, Powell W. Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics 2006, 172:557-567.
    • (2006) Genetics , vol.172 , pp. 557-567
    • Caldwell, K.S.1    Russell, J.2    Langridge, P.3    Powell, W.4
  • 5
    • 0344961281 scopus 로고    scopus 로고
    • A semidwarf phenotype of barley uzu results from a nucleotide substitution in the gene encoding a putative brassinosteroid receptor
    • Chono M, Honda I, Zeniya H, Yoneyama K, Saisho D, Takeda K, Takatsuto S, Hoshino T, Watanabe Y. A semidwarf phenotype of barley uzu results from a nucleotide substitution in the gene encoding a putative brassinosteroid receptor. Plant Physiol. 2003, 133:1209-1219.
    • (2003) Plant Physiol. , vol.133 , pp. 1209-1219
    • Chono, M.1    Honda, I.2    Zeniya, H.3    Yoneyama, K.4    Saisho, D.5    Takeda, K.6    Takatsuto, S.7    Hoshino, T.8    Watanabe, Y.9
  • 9
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice L R. Measures of the amount of ecologic association between species. Ecology 1945, 26:297-302.
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 11
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    • Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 2005, 14:2611-2620.
    • (2005) Mol. Ecol. , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 12
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard J K. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 2003, 164:1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 16
    • 33645556680 scopus 로고    scopus 로고
    • Impact of plant breeding on genetic diversity of the Canadian hard red spring wheat germplasm as revealed by EST-derived SSR markers
    • Fu Y B, Peterson G W, Yu J K, Gao L, Jia J, Richards K W. Impact of plant breeding on genetic diversity of the Canadian hard red spring wheat germplasm as revealed by EST-derived SSR markers. Theor. Appl. Genet. 2006, 112:1239-1247.
    • (2006) Theor. Appl. Genet. , vol.112 , pp. 1239-1247
    • Fu, Y.B.1    Peterson, G.W.2    Yu, J.K.3    Gao, L.4    Jia, J.5    Richards, K.W.6
  • 17
    • 0000271492 scopus 로고
    • Assessment of the degree and the type of restriction-fragment-length-polymorphism in barley (Hordeum vulgare)
    • Graner A, Siedler H, Jahoor A, Herrmann R G, Wenzel G. Assessment of the degree and the type of restriction-fragment-length-polymorphism in barley (Hordeum vulgare). Theor. Appl. Genet. 1990, 80:826-832.
    • (1990) Theor. Appl. Genet. , vol.80 , pp. 826-832
    • Graner, A.1    Siedler, H.2    Jahoor, A.3    Herrmann, R.G.4    Wenzel, G.5
  • 18
    • 33845490795 scopus 로고    scopus 로고
    • Disequilibrium and association in barley: thinking outside the glass
    • Hayes P, Szücs P. Disequilibrium and association in barley: thinking outside the glass. Proc. Natl Acad. Sci. USA 2006, 103:18385-18386.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 18385-18386
    • Hayes, P.1    Szücs, P.2
  • 20
    • 77954442454 scopus 로고    scopus 로고
    • FAO and Cornell University, Cornell University, New York, Available at: (accessed on 10 December, 2008)
    • Hershey C H. Plant Breeding News 161 An Electronic Newsletter of Applied Plant Breeding 2005, http://www.fao.org/WAICENT/FAOINFO/AGRICULT/AGP/AGPC/doc/services/pbn.html, FAO and Cornell University, Cornell University, New York, Available at: (accessed on 10 December, 2008)
    • (2005) Plant Breeding News 161 An Electronic Newsletter of Applied Plant Breeding
    • Hershey, C.H.1
  • 21
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill W G, Robertson A. Linkage disequilibrium in finite populations. Theor. Appl. Genet. 1968, 38:226-231.
    • (1968) Theor. Appl. Genet. , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 22
    • 34748868431 scopus 로고    scopus 로고
    • Detecting population structure using STRUCTURE software: effect of background linkage disequilibrium
    • Kaeuffer R, Reale D, Coltman D W, Pontier D. Detecting population structure using STRUCTURE software: effect of background linkage disequilibrium. Heredity 2007, 99:374-380.
    • (2007) Heredity , vol.99 , pp. 374-380
    • Kaeuffer, R.1    Reale, D.2    Coltman, D.W.3    Pontier, D.4
  • 23
    • 0000569160 scopus 로고
    • Confidence interval estimators for heritability for several mating and experiment designs
    • Knapp S J, Bridges W C. Confidence interval estimators for heritability for several mating and experiment designs. Theor. Appl. Genet. 1987, 73:759-763.
    • (1987) Theor. Appl. Genet. , vol.73 , pp. 759-763
    • Knapp, S.J.1    Bridges, W.C.2
  • 26
    • 33645576492 scopus 로고    scopus 로고
    • AB-QTL analysis in spring barley: II. Detection of favourable exotic alleles for agronomic traits introgressed from wild barley (H. vulgare ssp. spontaneum)
    • Korff M, Wang H, Léon J, Pillen K. AB-QTL analysis in spring barley: II. Detection of favourable exotic alleles for agronomic traits introgressed from wild barley (H. vulgare ssp. spontaneum). Theor. Appl. Genet. 2006, 112:1221-1231.
    • (2006) Theor. Appl. Genet. , vol.112 , pp. 1221-1231
    • Korff, M.1    Wang, H.2    Léon, J.3    Pillen, K.4
  • 27
    • 5144221069 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars
    • Kraakman A T, Niks R E, den Berg P M, Stam P, Van Eeuwijk F A. Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics 2004, 168:435-446.
    • (2004) Genetics , vol.168 , pp. 435-446
    • Kraakman, A.T.1    Niks, R.E.2    den Berg, P.M.3    Stam, P.4    Van Eeuwijk, F.A.5
  • 29
    • 33645067401 scopus 로고    scopus 로고
    • Analysis of molecular diversity, population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L.)
    • Malysheva-Otto L V, Ganal M W, Röder M S. Analysis of molecular diversity, population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L.). BMC Genet 2006, 7:6.
    • (2006) BMC Genet , vol.7 , pp. 6
    • Malysheva-Otto, L.V.1    Ganal, M.W.2    Röder, M.S.3
  • 30
    • 0034830186 scopus 로고    scopus 로고
    • QTL analysis of agronomic traits in barley based on the doubled haploid progeny of two elite North American varieties representing different germplasm groups
    • Marquez-Cedillo L A, Hayes P M, Kleinhofs A, Legge W G, Rossnagel B G, Sato K, Ullrich S E, Wesenberg D M. QTL analysis of agronomic traits in barley based on the doubled haploid progeny of two elite North American varieties representing different germplasm groups. Theor. Appl. Genet. 2001, 103:625-637.
    • (2001) Theor. Appl. Genet. , vol.103 , pp. 625-637
    • Marquez-Cedillo, L.A.1    Hayes, P.M.2    Kleinhofs, A.3    Legge, W.G.4    Rossnagel, B.G.5    Sato, K.6    Ullrich, S.E.7    Wesenberg, D.M.8
  • 31
    • 0028055764 scopus 로고
    • Relationships among European barley germplasm: 1. Genetic diversity among winter and spring cultivars revealed by RFLPs
    • Melchinger A E, Graner A, Singh M, Messmer M M. Relationships among European barley germplasm: 1. Genetic diversity among winter and spring cultivars revealed by RFLPs. Crop Sci 1994, 34:1191-1199.
    • (1994) Crop Sci , vol.34 , pp. 1191-1199
    • Melchinger, A.E.1    Graner, A.2    Singh, M.3    Messmer, M.M.4
  • 32
    • 70749085124 scopus 로고    scopus 로고
    • Comparison of weighting methods in two-stage analysis of plant breeding trials
    • (in press)
    • Möhring J, Piepho H P. Comparison of weighting methods in two-stage analysis of plant breeding trials. Crop Sci. 2009, (in press)
    • (2009) Crop Sci.
    • Möhring, J.1    Piepho, H.P.2
  • 34
    • 0032937154 scopus 로고    scopus 로고
    • Stability analysis using the SAS system
    • Piepho H P. Stability analysis using the SAS system. Agron J 1999, 91:154-160.
    • (1999) Agron J , vol.91 , pp. 154-160
    • Piepho, H.P.1
  • 35
    • 0043210319 scopus 로고    scopus 로고
    • Advanced backcross QTL analysis in barley (Hordeum vulgare L.)
    • Pillen K, Zacharias A, Léon J. Advanced backcross QTL analysis in barley (Hordeum vulgare L.). Theor. Appl. Genet. 2003, 107:340-352.
    • (2003) Theor. Appl. Genet. , vol.107 , pp. 340-352
    • Pillen, K.1    Zacharias, A.2    Léon, J.3
  • 36
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard J K, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 37
    • 30544437187 scopus 로고    scopus 로고
    • Protein and hordein fraction content in barley seeds as affected by sowing date and their relations to malting quality
    • Qi J C, Chen J X, Wang J M, Wu F B, Cao L P, Zhang G P. Protein and hordein fraction content in barley seeds as affected by sowing date and their relations to malting quality. J. Zhejiang Univ. Sci. B 2005, 6:1069-1075.
    • (2005) J. Zhejiang Univ. Sci. B , vol.6 , pp. 1069-1075
    • Qi, J.C.1    Chen, J.X.2    Wang, J.M.3    Wu, F.B.4    Cao, L.P.5    Zhang, G.P.6
  • 38
    • 5344244656 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria, ISBN 3-900051-07-0, Available at: (accessed on 10 December, 2008)
    • R: A Language and Environment for Statistical Computing 2008, http://www.R-project.org, R Foundation for Statistical Computing, Vienna, Austria, ISBN 3-900051-07-0, Available at: (accessed on 10 December, 2008)
    • (2008) R: A Language and Environment for Statistical Computing
  • 39
    • 0036186213 scopus 로고    scopus 로고
    • Novel genetic mapping tools in plants: SNPs and LD-based approaches
    • Rafalski J A. Novel genetic mapping tools in plants: SNPs and LD-based approaches. Plant Sci. 2002, 162:329-333.
    • (2002) Plant Sci. , vol.162 , pp. 329-333
    • Rafalski, J.A.1
  • 42
    • 1842736068 scopus 로고    scopus 로고
    • Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes
    • Roussel V, Koenig J, Beckert M, Balfourier F. Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes. Theor. Appl. Genet. 2004, 108:920-930.
    • (2004) Theor. Appl. Genet. , vol.108 , pp. 920-930
    • Roussel, V.1    Koenig, J.2    Beckert, M.3    Balfourier, F.4
  • 43
    • 0035645784 scopus 로고    scopus 로고
    • The analysis of crop variety evaluation data in Australia
    • Smith A, Cullis B, Gilmour A. The analysis of crop variety evaluation data in Australia. Aust. NZ J. Stat. 2001, 43:129-145.
    • (2001) Aust. NZ J. Stat. , vol.43 , pp. 129-145
    • Smith, A.1    Cullis, B.2    Gilmour, A.3
  • 44
    • 0034867045 scopus 로고    scopus 로고
    • A new DNA extraction method for high-throughput marker analysis in a large-genome species such as Triticum aestivum
    • Stein N, Herren G, Keller B. A new DNA extraction method for high-throughput marker analysis in a large-genome species such as Triticum aestivum. Plant Breeding 2001, 120:354-356.
    • (2001) Plant Breeding , vol.120 , pp. 354-356
    • Stein, N.1    Herren, G.2    Keller, B.3
  • 46
    • 34247874615 scopus 로고    scopus 로고
    • Effects of introgression and recombination on haplotype structure and linkage disequilibrium surrounding a locus encoding Bymovirus resistance in barley
    • Stracke S, Presterl T, Stein N, Perovic D, Ordon F, Graner A. Effects of introgression and recombination on haplotype structure and linkage disequilibrium surrounding a locus encoding Bymovirus resistance in barley. Genetics 2007, 175:805-817.
    • (2007) Genetics , vol.175 , pp. 805-817
    • Stracke, S.1    Presterl, T.2    Stein, N.3    Perovic, D.4    Ordon, F.5    Graner, A.6
  • 48
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T, Michalek W, Varshney R K, Graner A. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor. Appl. Genet. 2003, 106:411-422.
    • (2003) Theor. Appl. Genet. , vol.106 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 51
    • 35248900410 scopus 로고    scopus 로고
    • Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys
    • Varshney R K, Chabane K, Hendre P S, Aggarwal R K, Graner A. Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Sci. 2007, 173:638-649.
    • (2007) Plant Sci. , vol.173 , pp. 638-649
    • Varshney, R.K.1    Chabane, K.2    Hendre, P.S.3    Aggarwal, R.K.4    Graner, A.5
  • 53
    • 67349119868 scopus 로고    scopus 로고
    • Population structure and linkage disequilibrium in barley assessed by DArT markers
    • DOI
    • Zhang L Y, Marchand S, Tinker N A, Belzile F. Population structure and linkage disequilibrium in barley assessed by DArT markers. Theor. Appl. Genet. 2009, 119:43-52. 10.1007/s00122-009-1015-4, DOI
    • (2009) Theor. Appl. Genet. , vol.119 , pp. 43-52
    • Zhang, L.Y.1    Marchand, S.2    Tinker, N.A.3    Belzile, F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.