Analysis of the 5'UTR of HCV genotype 3 grown in vitro in human B cells, T cells, and macrophages

Virology Journal

Volumn 7, Issue , 2010, Pages

  Revie, Dennis ^a   Alberti, Michael O ^a,e   Prichard, John G ^b   Kelley, Ann S ^c   Salahuddin, S Zaki ^d  

^a CALIFORNIA LUTHERAN UNIVERSITY   (United States)

^b VENTURA COUNTY MEDICAL CENTER   (United States)

^c Ventura County Hematology Oncology Specialists   (United States)

^d California Institute of Molecular Medicine   (United States)

^e University of Alabama at Birmingham   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

5' UNTRANSLATED REGION; ARTICLE; B LYMPHOCYTE; BLOOD; CELL TYPE; CONTROLLED STUDY; GENOTYPE; HEPATITIS C; HEPATITIS C VIRUS; HUMAN; HUMAN CELL; IN VITRO STUDY; MACROPHAGE; MAJOR CLINICAL STUDY; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS; T LYMPHOCYTE; VIROGENESIS; VIRUS CULTURE; VIRUS ISOLATION; VIRUS REPLICATION; CLASSIFICATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE ALIGNMENT; VIROLOGY;

HEPATITIS C VIRUS; HEPATITIS C VIRUS GENOTYPE 1;

5' UNTRANSLATED REGIONS; B-LYMPHOCYTES; BASE SEQUENCE; GENOTYPE; HEPACIVIRUS; HEPATITIS C; HUMANS; MACROPHAGES; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; T-LYMPHOCYTES; VIRUS REPLICATION;

EID: 77954409141     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-7-155     Document Type: Article

References (29)

1. The epidemiology of hepatitis C infection in the United States. VK Rustgi, J Gastroenterol 2007 42 513 521 10.1007/s00535-007-2064-6 17653645
2. HCV genotypes in patients with liver disease of different stages and severity. A Mangia I Cascavilla G Lezzi F Spirito G Maertens L Parlatore G Saracco M Rizzetto A Andriulli, J Hepatol 1997 26 1173 1178 10.1016/S0168- 8278(97)80449-7 9210601
3. NIH Consensus Statement on Management of Hepatitis C: 2002. NIH Consens State Sci Statements 2002 19 1 46
4. Optimizing the treatment of chronic hepatitis due to hepatitis C virus genotypes 2 and 3: a review. G Tarantino A Craxi, Liver Int 2009 29 Suppl 1 31 38 10.1111/j.1478-3231.2008.01924.x 19207964
5. Treatment of hepatitis C virus infection. K Weigand W Stremmel J Encke, World J Gastroenterol 2007 13 1897 1905 17461488
6. Steatosis in chronic hepatitis C: why does it really matter? T Asselah L Rubbia-Brandt P Marcellin F Negro, Gut 2006 55 123 130 10.1136/gut.2005.069757 16344578
7. Genotype 3 is associated with accelerated fibrosis progression in chronic hepatitis C. PY Bochud T Cai K Overbeck M Bochud JF Dufour B Mullhaupt J Borovicka M Heim D Moradpour A Cerny, et al. J Hepatol 2009 51 4 655 66 10.1016/j.jhep.2009.05.016 19665246
8. The simultaneous presence and expression of human hepatitis C virus (HCV), human herpesvirus-6 (HHV-6), and human immunodeficiency virus-1 (HIV-1) in a single human T-cell. SZ Salahuddin KA Snyder A Godwin R Grewal JG Prichard AS Kelley D Revie, Virol J 2007 4 106 10.1186/1743-422X-4-106 17958914
9. Sequences in the 5' nontranslated region of hepatitis C virus required for RNA replication. P Friebe V Lohmann N Krieger R Bartenschlager, J Virol 2001 75 12047 12057 10.1128/JVI.75.24.12047-12057.2001 11711595 (Pubitemid 33115877)
10. Almost the entire 5' non-translated region of hepatitis C virus is required for cap-independent translation. R Rijnbrand P Bredenbeek T van der Straaten L Whetter G Inchauspe S Lemon W Spaan, FEBS Lett 1995 365 115 119 10.1016/0014-5793(95)00458-L 7781762
11. Translation of human hepatitis C virus RNA in cultured cells is mediated by an internal ribosome-binding mechanism. C Wang P Sarnow A Siddiqui, J Virol 1993 67 3338 3344 8388503
12. Transmission of human hepatitis C virus from patients in secondary cells for long term culture. D Revie RS Braich D Bayles N Chelyapov R Khan C Geer R Reisman AS Kelley JG Prichard SZ Salahuddin, Virol J 2005 2 37 10.1186/1743-422X-2-37 15840164
13. Analysis of in vitro replicated human hepatitis C virus (HCV) for the determination of genotypes and quasispecies. D Revie MO Alberti RS Braich N Chelyapov D Bayles JG Prichard SZ Salahuddin, Virol J 2006 3 81 10.1186/1743-422X-3-81 17010197
14. Analysis of natural variants of the hepatitis C virus internal ribosome entry site reveals that primary sequence plays a key role in cap-independent translation. MI Barria A Gonzalez J Vera-Otarola U Leon V Vollrath D Marsac O Monasterio T Perez-Acle A Soza M Lopez-Lastra, Nucleic Acids Res 2009 37 957 971 10.1093/nar/gkn1022 19106142
15. Seven nucleotide changes characteristic of the hepatitis C virus genotype 3 5' untranslated region: correlation with reduced in vitro replication. C Masante K Mahias S Lourenco E Dumas A Cahour P Trimoulet H Fleury T Astier-Gin M Ventura, J Gen Virol 2008 89 212 221 10.1099/vir.0.83067-0 18089745
16. Discovery of significant variants containing large deletions in the 5'UTR of human hepatitis C virus (HCV). D Revie MO Alberti RS Braich D Bayles JG Prichard SZ Salahuddin, Virol J 2006 3 82 10.1186/1743-422X-3-82 17010198
17. Hepatitis C virus RNA in peripheral blood mononuclear cells: comparing acute and chronic hepatitis C virus infection. TT Chang KC Young YJ Yang HY Lei HL Wu, Hepatology 1996 23 977 981 10.1002/hep.510230506 8621178
18. Quantification of hepatitis C virus-infected peripheral blood mononuclear cells by in situ reverse transcriptase-polymerase chain reaction. L Muratori D Gibellini M Lenzi M Cataleta P Muratori MC Morelli FB Bianchi, Blood 1996 88 2768 2774 8839874
19. Extrahepatic replication of HCV: insights into clinical manifestations and biological consequences. JT Blackard N Kemmer KE Sherman, Hepatology 2006 44 15 22 10.1002/hep.21283 16799966
20. Equal amounts of intracellular and virion-enclosed hepatitis C virus RNA are associated with peripheral-blood mononuclear cells in vivo. P Kaiser B Niederost B Joos V von Wyl M Opravil R Weber HF Gunthard M Fischer, J Infect Dis 2006 194 1713 1723 10.1086/508431 17109344
21. Negative-strand hepatitis C virus (HCV) RNA in peripheral blood mononuclear cells from anti-HCV-positive/HIV-infected women. T Laskus EA Operskalski M Radkowski J Wilkinson WJ Mack M deGiacomo L Al-Harthi Z Chen J Xu A Kovacs, J Infect Dis 2007 195 124 133 10.1086/509897 17152016
22. Hepatitis C virus populations in the plasma, peripheral blood mononuclear cells and cerebrospinal fluid of HIV/hepatitis C virus-co-infected patients. S Bagaglio P Cinque S Racca R Pedale MA Grasso A Lazzarin G Morsica, Aids 2005 19 Suppl 3 151 165 10.1097/01.aids.0000192085.87302.39 16251813
23. Compartmentalization of hepatitis C virus genotypes between plasma and peripheral blood mononuclear cells. AM Roque-Afonso D Ducoulombier G Di Liberto R Kara M Gigou E Dussaix D Samuel C Feray, J Virol 2005 79 6349 6357 10.1128/JVI.79.10.6349-6357.2005 15858018
24. Investigation of putative multisubtype hepatitis C virus infections in vivo by heteroduplex mobility analysis of core/envelope subgenomes. H Li LV Thomassen A Majid BJ McMahon D Bruden S McArdle N Bano M Chung RL Carithers JD Perkins, et al. J Virol 2008 82 7524 7532 10.1128/JVI.02220-07 18495766
25. A comprehensive system for consistent numbering of HCV sequences, proteins and epitopes. C Kuiken C Combet J Bukh IT Shin G Deleage M Mizokami R Richardson E Sablon K Yusim JM Pawlotsky P Simmonds, Hepatology 2006 44 1355 1361 10.1002/hep.21377 17058236
26. The Los Alamos HCV Sequence Database. C Kuiken K Yusim L Boykin R Richardson, Bioinformatics 2005 21 379 384 10.1093/bioinformatics/bth485 15377502 (Pubitemid 40246609)
27. Nucleotide and amino acid complexity of hepatitis C virus quasispecies in serum and liver. B Cabot M Martell J Esteban S Sauleda T Otero R Esteban J Guardia J Gomez, J Virol 2000 74 805 811 10.1128/JVI.74.2.805-811.2000 10623742
28. Interferon resistance of hepatitis C virus genotype 1b: relationship to nonstructural 5A gene quasispecies mutations. J Pawlotsky G Germanidis A Neumann M Pellerin P Frainais D Dhumeaux, J Virol 1998 72 2795 2805 9525599
29. Hepatitis C virus internal ribosome entry site RNA contains a tertiary structural element in a functional domain of stem-loop II. A Lyons J Lytle J Gomez H Robertson, Nucleic Acids Res 2001 29 2535 2541 10.1093/nar/29.12.2535 11410661