-
1
-
-
78651162036
-
Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis
-
Allfrey VG, Faulkner R, Mirsky AE. Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis. Proc Natl Acad Sci USA 51:786-794, 1964.
-
(1964)
Proc. Natl. Acad. Sci. USA
, vol.51
, pp. 786-794
-
-
Allfrey, V.G.1
Faulkner, R.2
Mirsky, A.E.3
-
2
-
-
0014422516
-
Histone acetylation in insect chromosomes
-
Allfrey VG, Pogo BG, Littau VC, Gershey EL, Mirsky AE. Histone acetylation in insect chromosomes. Science 159:314-316, 1968.
-
(1968)
Science
, vol.159
, pp. 314-316
-
-
Allfrey, V.G.1
Pogo, B.G.2
Littau, V.C.3
Gershey, E.L.4
Mirsky, A.E.5
-
3
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. High-resolution profiling of histone methylations in the human genome. Cell 129:823-837, 2007.
-
(2007)
Cell.
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
4
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ 3rd, Gingeras TR, Schreiber SL, Lander ES. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 120:169-181, 2005.
-
(2005)
Cell.
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
Kamal, M.2
Lindblad-Toh, K.3
Bekiranov, S.4
Bailey, D.K.5
Huebert, D.J.6
McMahon, S.7
Karlsson, E.K.8
Kulbokas III, E.J.9
Gingeras, T.R.10
Schreiber, S.L.11
Lander, E.S.12
-
5
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125:315-326, 2006.
-
(2006)
Cell.
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
6
-
-
0019322245
-
DNA methylation and the frequency of CpG in animal DNA
-
Bird AP. DNA methylation and the frequency of CpG in animal DNA. Nucleic Acids Res 8:1499-1504, 1980.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 1499-1504
-
-
Bird, A.P.1
-
7
-
-
0021321955
-
A rapid, sensitive method for detection of alkaline phosphatase- conjugated antiantibody on Western blots
-
Blake MS, Johnston KH, Russell-Jones GJ, Gotschlich EC. A rapid, sensitive method for detection of alkaline phosphatase-conjugated antiantibody on Western blots. Anal Biochem 136:175-179, 1984.
-
(1984)
Anal. Biochem.
, vol.136
, pp. 175-179
-
-
Blake, M.S.1
Johnston, K.H.2
Russell-Jones, G.J.3
Gotschlich, E.C.4
-
8
-
-
67349190247
-
Linking DNA methylation and histone modification: Patterns and paradigms
-
Cedar H, Bergman Y. Linking DNA methylation and histone modification: patterns and paradigms. Nat Rev Genet 10:295-304, 2009.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 295-304
-
-
Cedar, H.1
Bergman, Y.2
-
9
-
-
57349181687
-
Biotinylation of histones represses transposable elements in human and mouse cells and cell lines and in Drosophila melanogaster
-
Chew YC, West JT, Kratzer SJ, Ilvarsonn AM, Eissenberg JC, Dave BJ, Klinkebiel D, Christman JK, Zempleni J. Biotinylation of histones represses transposable elements in human and mouse cells and cell lines and in Drosophila melanogaster. J Nutr 138:2316-2322, 2008.
-
(2008)
J. Nutr.
, vol.138
, pp. 2316-2322
-
-
Chew, Y.C.1
West, J.T.2
Kratzer, S.J.3
Ilvarsonn, A.M.4
Eissenberg, J.C.5
Dave, B.J.6
Klinkebiel, D.7
Christman, J.K.8
Zempleni, J.9
-
10
-
-
0028096611
-
High sensitivity mapping of methylated cytosines
-
Clark SJ, Harrison J, Paul CL, Frommer M. High sensitivity mapping of methylated cytosines. Nucleic Acids Res 22:2990-2997, 1994.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2990-2997
-
-
Clark, S.J.1
Harrison, J.2
Paul, C.L.3
Frommer, M.4
-
11
-
-
34547528183
-
DNA methylation: Bisulphite modification and analysis
-
Clark SJ, Statham A, Stirzaker C, Molloy PL, Frommer M. DNA methylation: bisulphite modification and analysis. Nat Protoc 1:2353-2364, 2006.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2353-2364
-
-
Clark, S.J.1
Statham, A.2
Stirzaker, C.3
Molloy, P.L.4
Frommer, M.5
-
12
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452:215-219, 2008.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
13
-
-
22144482323
-
Protein identification using sequential ion/ion reactions and tandem mass spectrometry
-
Coon JJ, Ueberheide B, Syka JE, Dryhurst DD, Ausio J, Shabanowitz J, Hunt DF. Protein identification using sequential ion/ion reactions and tandem mass spectrometry. Proc Natl Acad Sci USA 102:9463-9468, 2005.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 9463-9468
-
-
Coon, J.J.1
Ueberheide, B.2
Syka, J.E.3
Dryhurst, D.D.4
Ausio, J.5
Shabanowitz, J.6
Hunt, D.F.7
-
14
-
-
33646145721
-
Circadian regulator CLOCK is a histone acetyltransferase
-
Doi M, Hirayama J, Sassone-Corsi P. Circadian regulator CLOCK is a histone acetyltransferase. Cell 125:497-508, 2006.
-
(2006)
Cell.
, vol.125
, pp. 497-508
-
-
Doi, M.1
Hirayama, J.2
Sassone-Corsi, P.3
-
15
-
-
0034654669
-
MethyLight: A high-throughput assay to measure DNA methylation
-
Eads CA, Danenberg KD, Kawakami K, Saltz LB, Blake C, Shibata D, Danenberg PV, Laird PW. MethyLight: a high-throughput assay to measure DNA methylation. Nucleic Acids Res 28: E32, 2000.
-
(2000)
Nucleic Acids Res.
, vol.28
-
-
Eads, C.A.1
Danenberg, K.D.2
Kawakami, K.3
Saltz, L.B.4
Blake, C.5
Shibata, D.6
Danenberg, P.V.7
Laird, P.W.8
-
16
-
-
34047220963
-
Resistance of high-fat diet in the female progeny of obese mice fed a control diet during the periconceptual, gestation, and lactation periods
-
Gallou-Kabani C, Vigé A, Gross MS, Boileau C, Rabes JP, Fruchart-Najib J, Jais JP, Junien C. Resistance of high-fat diet in the female progeny of obese mice fed a control diet during the periconceptual, gestation, and lactation periods. Am J Physiol Endocrinol Metab 292: E1095-E1100, 2007.
-
(2007)
Am. J. Physiol. Endocrinol. Metab.
, vol.292
-
-
Gallou-Kabani, C.1
Vigé, A.2
Gross, M.S.3
Boileau, C.4
Rabes, J.P.5
Fruchart-Najib, J.6
Jais, J.P.7
Junien, C.8
-
17
-
-
34147177521
-
Organismal differences in post-translational modifications in histones H3 and H4
-
DOI 10.1074/jbc.M607900200
-
Garcia BA, Hake SB, Diaz RL, Kauer M, Morris SA, Recht J, Shabanowitz J, Mishra N, Strahl BD, Allis CD, Hunt DF. Organismal differences in post-translational modifications in histones H3 and H4. J Biol Chem 282:7641-7655, 2007. (Pubitemid 47093632)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.10
, pp. 7641-7655
-
-
Garcia, B.A.1
Hake, S.B.2
Diaz, R.L.3
Kauer, M.4
Morris, S.A.5
Recht, J.6
Shabanowitz, J.7
Mishra, N.8
Strahl, B.D.9
Allis, C.D.10
Hunt, D.F.11
-
18
-
-
34248577604
-
Chemical derivatization of histones for facilitated analysis by mass spectrometry
-
Garcia BA, Mollah S, Ueberheide BM, Busby SA, Muratore TL, Shabanowitz J, Hunt DF. Chemical derivatization of histones for facilitated analysis by mass spectrometry. Nat Protoc 2:933-938, 2007.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 933-938
-
-
Garcia, B.A.1
Mollah, S.2
Ueberheide, B.M.3
Busby, S.A.4
Muratore, T.L.5
Shabanowitz, J.6
Hunt, D.F.7
-
19
-
-
34249779529
-
Pervasive combinatorial modification of histone H3 in human cells
-
Garcia BA, Pesavento JJ, Mizzen CA, Kelleher NL. Pervasive combinatorial modification of histone H3 in human cells. Nat Methods 4:487-489, 2007.
-
(2007)
Nat. Methods
, vol.4
, pp. 487-489
-
-
Garcia, B.A.1
Pesavento, J.J.2
Mizzen, C.A.3
Kelleher, N.L.4
-
20
-
-
0030822741
-
Electrospray: Principles and Practice
-
Gaskell S. Electrospray: Principles and Practice. J Mass Spectrom 32:677-688, 1997.
-
(1997)
J. Mass Spectrom.
, vol.32
, pp. 677-688
-
-
Gaskell, S.1
-
21
-
-
69149100342
-
Top-down high-resolution mass spectrometry of cardiac myosin binding protein C revealed that truncation alters protein phosphorylation state
-
Ge Y, Rybakova IN, Xu Q, Moss RL. Top-down high-resolution mass spectrometry of cardiac myosin binding protein C revealed that truncation alters protein phosphorylation state. Proc Natl Acad Sci USA 106:12658-12663, 2009.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 12658-12663
-
-
Ge, Y.1
Rybakova, I.N.2
Xu, Q.3
Moss, R.L.4
-
22
-
-
73249144150
-
DNA methylation in early development
-
Geiman TM, Muegge K. DNA methylation in early development. Mol Reprod Dev 77:105-113, 2010.
-
(2010)
Mol. Reprod. Dev.
, vol.77
, pp. 105-113
-
-
Geiman, T.M.1
Muegge, K.2
-
23
-
-
84859622095
-
Biotin is not a natural histone modification
-
Healy S, Perez-Cadahia B, Jia D, McDonald MK, Davie JR, Gravel RA. Biotin is not a natural histone modification. Biochim Biophys Acta 1789:719-733, 2009.
-
(2009)
Biochim. Biophys. Acta
, vol.1789
, pp. 719-733
-
-
Healy, S.1
Perez-Cadahia, B.2
Jia, D.3
McDonald, M.K.4
Davie, J.R.5
Gravel, R.A.6
-
24
-
-
0029843950
-
Methylation-specific PCR: A novel PCR assay for methylation status of CpG islands
-
Herman JG, Graff JR, Myohanen S, Nelkin BD, Baylin SB. Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proc Natl Acad Sci USA 93:9821-9826, 1996.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9821-9826
-
-
Herman, J.G.1
Graff, J.R.2
Myohanen, S.3
Nelkin, B.D.4
Baylin, S.B.5
-
25
-
-
76149113606
-
Epigenetics and transgenerational transfer: A physiological perspective
-
Ho DH, Burggren WW. Epigenetics and transgenerational transfer: a physiological perspective. J Exp Biol 213:3-16, 2010.
-
(2010)
J. Exp. Biol.
, vol.213
, pp. 3-16
-
-
Ho, D.H.1
Burggren, W.W.2
-
26
-
-
73949158816
-
Regulation of hippocampal H3 histone methylation by acute and chronic stress
-
Hunter RG, McCarthy KJ, Milne TA, Pfaff DW, McEwen BS. Regulation of hippocampal H3 histone methylation by acute and chronic stress. Proc Natl Acad Sci USA 106:20912-20917, 2009.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 20912-20917
-
-
Hunter, R.G.1
McCarthy, K.J.2
Milne, T.A.3
Pfaff, D.W.4
McEwen, B.S.5
-
27
-
-
0037372003
-
Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
-
Jaenisch R, Bird A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet 33:245-254, 2003.
-
(2003)
Nat. Genet.
, vol.33
, pp. 245-254
-
-
Jaenisch, R.1
Bird, A.2
-
28
-
-
0035839136
-
Translating the histone code
-
Jenuwein T, Allis CD. Translating the histone code. Science 293:1074-1080, 2001.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
29
-
-
58149090925
-
SIRT6 links histone H3 lysine 9 deacetylation to NF-kappaB-dependent gene expression and organismal life span
-
Kawahara TL, Michishita E, Adler AS, Damian M, Berber E, Lin M, McCord RA, Ongaigui KC, Boxer LD, Chang HY, Chua KF. SIRT6 links histone H3 lysine 9 deacetylation to NF-kappaB-dependent gene expression and organismal life span. Cell 136:62-74, 2009.
-
(2009)
Cell.
, vol.136
, pp. 62-74
-
-
Kawahara, T.L.1
Michishita, E.2
Adler, A.S.3
Damian, M.4
Berber, E.5
Lin, M.6
McCord, R.A.7
Ongaigui, K.C.8
Boxer, L.D.9
Chang, H.Y.10
Chua, K.F.11
-
30
-
-
0033518556
-
Top down versus bottom up protein characterization by tandem high-resolution mass spectrometry
-
29a. Kelleher NL, Lin HY, Valaskovic GA, Aaserud DJ, Fridriksson EK, McLafferty FW. Top down versus bottom up protein characterization by tandem high-resolution mass spectrometry. J Am Chem Soc 121:806-812, 1999.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 806-812
-
-
Kelleher, N.L.1
Lin, H.Y.2
Valaskovic, G.A.3
Aaserud, D.J.4
Fridriksson, E.K.5
McLafferty, F.W.6
-
31
-
-
23844519339
-
A high-resolution map of active promoters in the human genome
-
DOI 10.1038/nature03877
-
Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B. A high-resolution map of active promoters in the human genome. Nature 436:876-880, 2005. (Pubitemid 41160649)
-
(2005)
Nature
, vol.436
, Issue.7052
, pp. 876-880
-
-
Kim, T.H.1
Barrera, L.O.2
Zheng, M.3
Qu, C.4
Singer, M.A.5
Richmond, T.A.6
Wu, Y.7
Green, R.D.8
Ren, B.9
-
32
-
-
21344461775
-
Biological functions of biotinylated histones
-
Kothapalli N, Camporeale G, Kueh A, Chew YC, Oommen AM, Griffin JB, Zempleni J. Biological functions of biotinylated histones. J Nutr Biochem 16:446-448, 2005.
-
(2005)
J. Nutr. Biochem.
, vol.16
, pp. 446-448
-
-
Kothapalli, N.1
Camporeale, G.2
Kueh, A.3
Chew, Y.C.4
Oommen, A.M.5
Griffin, J.B.6
Zempleni, J.7
-
33
-
-
0033388858
-
In vivo cross-linking and immunoprecipitation for studying dynamic Protein: DNA associations in a chromatin environment
-
Kuo MH, Allis CD. In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment. Methods 19:425-433, 1999.
-
(1999)
Methods
, vol.19
, pp. 425-433
-
-
Kuo, M.H.1
Allis, C.D.2
-
34
-
-
70449472505
-
A robust two-dimensional separation for top-down tandem mass spectrometry of the low-mass proteome
-
Lee JE, Kellie JF, Tran JC, Tipton JD, Catherman AD, Thomas HM, Ahlf DR, Durbin KR, Vellaichamy A, Ntai I, Marshall AG, Kelleher NL. A robust two-dimensional separation for top-down tandem mass spectrometry of the low-mass proteome. J Am Soc Mass Spectrom 20:2183-2191, 2009.
-
(2009)
J. Am. Soc. Mass Spectrom.
, vol.20
, pp. 2183-2191
-
-
Lee, J.E.1
Kellie, J.F.2
Tran, J.C.3
Tipton, J.D.4
Catherman, A.D.5
Thomas, H.M.6
Ahlf, D.R.7
Durbin, K.R.8
Vellaichamy, A.9
Ntai, I.10
Marshall, A.G.11
Kelleher, N.L.12
-
35
-
-
0027378582
-
Role for DNA methylation in genomic imprinting
-
Li E, Beard C, Jaenisch R. Role for DNA methylation in genomic imprinting. Nature 366:362-365, 1993.
-
(1993)
Nature
, vol.366
, pp. 362-365
-
-
Li, E.1
Beard, C.2
Jaenisch, R.3
-
36
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133:523-536, 2008.
-
(2008)
Cell.
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
37
-
-
70450277232
-
Identification and characterization of propionylation at histone H3 lysine 23 in mammalian cells
-
Liu B, Lin YH, Darwanto A, Song XH, Xu GL, Zhang KL. Identification and characterization of propionylation at histone H3 lysine 23 in mammalian cells. J Biol Chem 284:32288-32295, 2009.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 32288-32295
-
-
Liu, B.1
Lin, Y.H.2
Darwanto, A.3
Song, X.H.4
Xu, G.L.5
Zhang, K.L.6
-
38
-
-
27644589675
-
The diverse functions of histone lysine methylation
-
Martin C, Zhang Y. The diverse functions of histone lysine methylation. Nat Rev Mol Cell Biol 6:838-849, 2005.
-
(2005)
Nat. Rev. Mol. Cell. Biol.
, vol.6
, pp. 838-849
-
-
Martin, C.1
Zhang, Y.2
-
39
-
-
77950519215
-
Automated imaging MS: Toward high throughput imaging mass spectrometry
-
McDonnell LA, van Remoortere A, van Zeijl RJ, Dalebout H, Bladergroen MR, Deelder AM. Automated imaging MS: toward high throughput imaging mass spectrometry. J Proteomics 73:1279-1282, 2010.
-
(2010)
J. Proteomics
, vol.73
, pp. 1279-1282
-
-
McDonnell, L.A.1
Van Remoortere, A.2
Van Zeijl, R.J.3
Dalebout, H.4
Bladergroen, M.R.5
Deelder, A.M.6
-
40
-
-
65549118773
-
Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1
-
Nakahata Y, Sahar S, Astarita G, Kaluzova M, Sassone-Corsi P. Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1. Science 324:654-657, 2009.
-
(2009)
Science
, vol.324
, pp. 654-657
-
-
Nakahata, Y.1
Sahar, S.2
Astarita, G.3
Kaluzova, M.4
Sassone-Corsi, P.5
-
41
-
-
0027495467
-
Dissection of the methyl-CpG binding domain from the chromosomal protein MeCP2
-
Nan X, Meehan RR, Bird A. Dissection of the methyl-CpG binding domain from the chromosomal protein MeCP2. Nucleic Acids Res 21:4886-4892, 1993.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4886-4892
-
-
Nan, X.1
Meehan, R.R.2
Bird, A.3
-
42
-
-
0032574977
-
Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
-
Nan X, Ng HH, Johnson CA, Laherty CD, Turner BM, Eisenman RN, Bird A. Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature 393:386-389, 1998.
-
(1998)
Nature
, vol.393
, pp. 386-389
-
-
Nan, X.1
Ng, H.H.2
Johnson, C.A.3
Laherty, C.D.4
Turner, B.M.5
Eisenman, R.N.6
Bird, A.7
-
43
-
-
1642326716
-
Phosphorylation of histone H3: A balancing act between chromosome condensation and transcriptional activation
-
Nowak SJ, Corces VG. Phosphorylation of histone H3: a balancing act between chromosome condensation and transcriptional activation. Trends Genet 20:214-220, 2004.
-
(2004)
Trends Genet.
, vol.20
, pp. 214-220
-
-
Nowak, S.J.1
Corces, V.G.2
-
44
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine
-
Olsen JV, Ong S, Mann M. Trypsin cleaves exclusively C-terminal to arginine and lysine. Mol Cell Proteomics 3:608-614, 2004.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.2
Mann, M.3
-
45
-
-
70349312354
-
ChIP-seq: Advantages and challenges of a maturing technology
-
Park PJ. ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet 10:669-680, 2009.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
46
-
-
70449450290
-
One-pot shotgun quantitative mass spectrometry characterization of histones
-
Plazas-Mayorca MD, Zee BM, Young NL, Fingerman IM, LeRoy G, Briggs SD, Garcia BA. One-pot shotgun quantitative mass spectrometry characterization of histones. J Proteome Res 8:5367-5374, 2009.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 5367-5374
-
-
Plazas-Mayorca, M.D.1
Zee, B.M.2
Young, N.L.3
Fingerman, I.M.4
LeRoy, G.5
Briggs, S.D.6
Garcia, B.A.7
-
47
-
-
71749102589
-
Comparison of bisulfite sequencing PCR with pyrosequencing for measuring differences in DNA methylation
-
Reed K, Poulin ML, Yan L, Parissenti AM. Comparison of bisulfite sequencing PCR with pyrosequencing for measuring differences in DNA methylation. Anal Biochem 397:96-106, 2010.
-
(2010)
Anal. Biochem.
, vol.397
, pp. 96-106
-
-
Reed, K.1
Poulin, M.L.2
Yan, L.3
Parissenti, A.M.4
-
48
-
-
14644406272
-
Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping
-
Roh TY, Cuddapah S, Zhao K. Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev 19:542-552, 2005.
-
(2005)
Genes Dev.
, vol.19
, pp. 542-552
-
-
Roh, T.Y.1
Cuddapah, S.2
Zhao, K.3
-
49
-
-
0043171067
-
Chromatin immunoprecipitation: A tool for studying histone acetylation and transcription factor binding
-
Spencer VA, Sun JM, Li L, Davie JR. Chromatin immunoprecipitation: a tool for studying histone acetylation and transcription factor binding. Methods 31:67-75, 2003.
-
(2003)
Methods
, vol.31
, pp. 67-75
-
-
Spencer, V.A.1
Sun, J.M.2
Li, L.3
Davie, J.R.4
-
50
-
-
4444335470
-
The ABC's (and XYZ's) of peptide sequencing
-
Steen H, Mann M. The ABC's (and XYZ's) of peptide sequencing. Nat Rev Mol Cell Biol 5:699-711, 2004.
-
(2004)
Nat. Rev. Mol. Cell. Biol.
, vol.5
, pp. 699-711
-
-
Steen, H.1
Mann, M.2
-
51
-
-
3042789073
-
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
-
Syka JE, Coon JJ, Schroeder MJ, Shabanowitz J, Hunt DF. Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. Proc Natl Acad Sci USA 101:9528-9533, 2004.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 9528-9533
-
-
Syka, J.E.1
Coon, J.J.2
Schroeder, M.J.3
Shabanowitz, J.4
Hunt, D.F.5
-
52
-
-
3042765151
-
Novel linear quadrupole ion trap/FT mass spectrometer: Performance characterization and use in the comparative analysis of histone H3 posttranslational modifications
-
Syka JE, Marto JA, Bai DL, Horning S, Senko MW, Schwartz JC, Ueberheide B, Garcia B, Busby S, Muratore T, Shabanowitz J, Hunt DF. Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 posttranslational modifications. J Proteome Res 3:621-626, 2004.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 621-626
-
-
Syka, J.E.1
Marto, J.A.2
Bai, D.L.3
Horning, S.4
Senko, M.W.5
Schwartz, J.C.6
Ueberheide, B.7
Garcia, B.8
Busby, S.9
Muratore, T.10
Shabanowitz, J.11
Hunt, D.F.12
-
53
-
-
53049087443
-
Genes, exercise, growth, and the sedentary, obese child
-
Teran-Garcia M, Rankinen T, Bouchard C. Genes, exercise, growth, and the sedentary, obese child. J Appl Physiol 105:988-1001, 2008.
-
(2008)
J. Appl. Physiol.
, vol.105
, pp. 988-1001
-
-
Teran-Garcia, M.1
Rankinen, T.2
Bouchard, C.3
-
54
-
-
40849106789
-
Histone ubiquitination: Triggering gene activity
-
Weake VM, Workman JL. Histone ubiquitination: triggering gene activity. Mol Cell 29:653-663, 2008.
-
(2008)
Mol. Cell.
, vol.29
, pp. 653-663
-
-
Weake, V.M.1
Workman, J.L.2
-
55
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL, Schubeler D. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet 37:853-862, 2005.
-
(2005)
Nat. Genet.
, vol.37
, pp. 853-862
-
-
Weber, M.1
Davies, J.J.2
Wittig, D.3
Oakeley, E.J.4
Haase, M.5
Lam, W.L.6
Schubeler, D.7
-
56
-
-
0029560752
-
Heterochromatin and gene expression in Drosophila
-
Weiler KS, Wakimoto BT. Heterochromatin and gene expression in Drosophila. Annu Rev Genet 29:577-605, 1995.
-
(1995)
Annu. Rev. Genet.
, vol.29
, pp. 577-605
-
-
Weiler, K.S.1
Wakimoto, B.T.2
-
57
-
-
33746864004
-
ChIP-chip comes of age for genome-wide functional analysis
-
Wu J, Smith LT, Plass C, Huang TH. ChIP-chip comes of age for genome-wide functional analysis. Cancer Res 66:6899-6902, 2006.
-
(2006)
Cancer Res.
, vol.66
, pp. 6899-6902
-
-
Wu, J.1
Smith, L.T.2
Plass, C.3
Huang, T.H.4
-
58
-
-
33644845960
-
Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gelor LC-MALDI TOF/TOF
-
Wu WW, Wang G, Baek SJ, Shen RF. Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gelor LC-MALDI TOF/TOF. J Proteome Res 5:651-658, 2006.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 651-658
-
-
Wu, W.W.1
Wang, G.2
Baek, S.J.3
Shen, R.F.4
-
59
-
-
32844468049
-
Histone arginine methylation and its dynamic regulation
-
Wysocka J, Allis CD, Coonrod S. Histone arginine methylation and its dynamic regulation. Front Biosci 11:344-355, 2006.
-
(2006)
Front Biosci.
, vol.11
, pp. 344-355
-
-
Wysocka, J.1
Allis, C.D.2
Coonrod, S.3
-
60
-
-
0031577334
-
DNA (cytosine-5)-methyltransferases in mouse cells and tissues. Studies with a mechanismbased probe
-
Yoder JA, Soman NS, Verdine GL, Bestor TH. DNA (cytosine-5)- methyltransferases in mouse cells and tissues. Studies with a mechanismbased probe. J Mol Biol 270:385-395, 1997.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 385-395
-
-
Yoder, J.A.1
Soman, N.S.2
Verdine, G.L.3
Bestor, T.H.4
-
61
-
-
71049122240
-
High throughput characterization of combinatorial histone codes
-
Young NL, DiMaggio PA, Plazas-Mayorca MD, Baliban RC, Floudas CA, Garcia BA. High throughput characterization of combinatorial histone codes. Mol Cell Proteomics 8:2266-2284, 2009.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2266-2284
-
-
Young, N.L.1
DiMaggio, P.A.2
Plazas-Mayorca, M.D.3
Baliban, R.C.4
Floudas, C.A.5
Garcia, B.A.6
-
62
-
-
0141483484
-
Identification of novel histone post-translational modifications by peptide mass fingerprinting
-
Zhang L, Eugeni EE, Parthun MR, Freitas MA. Identification of novel histone post-translational modifications by peptide mass fingerprinting. Chromosoma 112:77-86, 2003.
-
(2003)
Chromosoma
, vol.112
, pp. 77-86
-
-
Zhang, L.1
Eugeni, E.E.2
Parthun, M.R.3
Freitas, M.A.4
-
63
-
-
72749089361
-
Working around the clock: Circadian rhythms and skeletal muscle
-
Zhang X, Dube TJ, Esser KA. Working around the clock: circadian rhythms and skeletal muscle. J Appl Physiol 107:1647-1654, 2009.
-
(2009)
J. Appl. Physiol.
, vol.107
, pp. 1647-1654
-
-
Zhang, X.1
Dube, T.J.2
Esser, K.A.3
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