THREaD Mapper Studio: A novel, visual web server for the estimation of genetic linkage maps

Nucleic Acids Research

Volumn 38, Issue SUPPL. 2, 2010, Pages

  Cheema, Jitender ^a   Ellis, T H Noel ^a   Dicks, Jo ^a  

^a JOHN INNES CENTRE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MARKER;

ARTICLE; COMPUTER PROGRAM; GENE MAPPING; GENE STRUCTURE; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC LINKAGE; HUMAN COMPUTER INTERACTION; INTERNET; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; BIOLOGY; CHROMOSOME MAP; COMPUTER GRAPHICS;

CHROMOSOME MAPPING; COMPUTATIONAL BIOLOGY; COMPUTER GRAPHICS; INTERNET; LINKAGE (GENETICS); SOFTWARE; GENETIC LINKAGE;

ANIMALIA;

EID: 77954271306     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq430     Document Type: Article

References (14)

1. Sturtevant, A.H. (1913) The linear arrangement of six sex-linked factors in Drosophila, as shown by their mode of association. J. Exp. Zool., 14, 43-59.
2. Edwards,A.W.F. (2005) Linkage methods in human genetics before the computer. Human Genet., 118, 515-530.
3. Chakravarti,A. and Lynn,A. (1999) Meiotic mapping in humans. In Birren,B., Green,E.D., Hieter,P., Klapholz,S., Myers,R.M., Riethman,H. and Roskams,J. (eds), Genome Analysis: A Laboratory Manual Series. Volume 4:Mapping Genomes. Cold Spring Harbor Laboratory Press, Plainview NY, pp. 1-70.
4. Nelson,J.C. (2005) Methods and software for genetic mapping. In Meksem,K. and Kahl,G. (eds), The Handbook of Plant Genome Mapping. Wiley-VCH Verlag GmbH & Co. KGaA, pp. 53-74.
5. Semagn,K., Bjørnstad,Å. and Ndjiondjop,M.N. (2006) Principles, requirements and prospects of genetic mapping in plants. Afr. J. Biotechnol., 5, 2569-2587.
6. Cheema,J. and Dicks,J. (2009) Computational approaches and software tools for genetic linkage map estimation in plants. Brief. Bioinformatics, 10, 595-608.
7. Podani,J. and Miklos,I. (2002) Resemblance coefficients and the horseshoe effect in principal coordinates analysis. Ecology, 83, 3331-3343.
8. Garvin,D.F., Mckenzie,N., Vogel,J.P., Mockler,T.C., Blankenheim,Z.J., Wright,J., Cheema,J.J.S., Dicks,J., Huo,N., Hayden,D.M. et al. (2010) An SSR-based genetic linkage map of the model grass Brachypodium distachyon. Genome, 53, 1-13.
9. Stam,P. (1993) Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. Plant J., 3, 739-744.
10. Schiex,T. and Gaspin,C. (1997) CarthaGène: constructing and joining maximum likelihood genetic maps. Proceedings of the International Conference on Intelligent Systems for Molecular Biology 1997, Abstract 5, 258-267.
11. de Givry,S., Bouchez,M., Chabrier,P., Milan,D. and Schiex,T. (2005) CarthaGène: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics, 21, 1703-1704.
12. Lander,E.S., Green,P., Abrahamson,J., Barlow,A., Daly,M.J., Lincoln,S.E. and Newberg,L.A. (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1, 174-181.
13. Wu,Y., Bhat,P.R., Close,T.J. and Lonardi,S. (2008) Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph. PLoS Genet., 4, e1000212.
14. Kosambi,D.D. (1944) The estimation of map distances from recombination values. Ann. Eugen., 12, 172-175.