메뉴 건너뛰기




Volumn 58, Issue 3, 2010, Pages 261-271

Effects of upwelling on short-term variability in microbial and biogeochemical processes in estuarine sediments from Elkhorn Slough, California, USA

Author keywords

Ammonia oxidizing bacteria; Benthic flux; Nitrification; Nitrogen; Oxygen dynamics

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); NITROSOMONADALES;

EID: 77954247258     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame01387     Document Type: Article
Times cited : (19)

References (58)
  • 1
    • 63949086869 scopus 로고    scopus 로고
    • Determination of orthophosphate by flow injection analysis
    • 31-115-01-1-I for Lachat Instruments
    • Ammerman J (2003) Determination of orthophosphate by flow injection analysis. QuikChem Method 31-115-01-1-I for Lachat Instruments.
    • (2003) QuikChem Method
    • Ammerman, J.1
  • 2
    • 0034041043 scopus 로고    scopus 로고
    • Diel biogeochemical cycling in a hyperventilating shallow estuarine environment
    • Milwaukee, WI Beck NG, Bruland KW (2000) Diel biogeochemical cycling in a hyperventilating shallow estuarine environment. Estuaries 23:177-187
    • (2000) Estuaries , vol.23 , pp. 177-187
    • Milwaukee, W.I.1    Beck, N.G.2    Bruland, K.W.3
  • 3
    • 42049122119 scopus 로고    scopus 로고
    • Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
    • Beman JM, Popp BN, Francis CA (2008) Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J 2:429-441
    • (2008) ISME J. , vol.2 , pp. 429-441
    • Beman, J.M.1    Popp, B.N.2    Francis, C.A.3
  • 4
    • 34248562001 scopus 로고    scopus 로고
    • Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient
    • Bernhard AE, Tucker J, Giblin AE, Stahl DA (2007) Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient. Environ Microbiol 9:1439-1447
    • (2007) Environ. Microbiol. , vol.9 , pp. 1439-1447
    • Bernhard, A.E.1    Tucker, J.2    Giblin, A.E.3    Stahl, D.A.4
  • 5
    • 33846223413 scopus 로고    scopus 로고
    • Chapter 12. Biogeochemical cycling
    • Caffrey JM, Brown M, Tyler B, Silberstein M eds, Elkhorn Slough Foundation, Moss Landing, CA
    • Caffrey JM (2002) Chapter 12. Biogeochemical cycling. In: Caffrey JM, Brown M, Tyler B, Silberstein M (eds) Changes in a California Estuary: an ecosystem profile of Elkhorn Slough. Elkhorn Slough Foundation, Moss Landing, CA, p 215-236
    • (2002) Changes in A California Estuary: An Ecosystem Profile of Elkhorn Slough , pp. 215-236
    • Caffrey, J.M.1
  • 6
    • 0037150386 scopus 로고    scopus 로고
    • Biogeochemical processes in a small California estuary. 1. Benthic fluxes and pore water constituents reflect high nutrient freshwater inputs
    • Caffrey JM, Harrington NE, Ward BB (2002) Biogeochemical processes in a small California estuary. 1. Benthic fluxes and pore water constituents reflect high nutrient freshwater inputs. Mar. Ecol Prog Ser 233:39-53
    • (2002) Mar. Ecol. Prog. Ser. , vol.233 , pp. 39-53
    • Caffrey, J.M.1    Harrington, N.E.2    Ward, B.B.3
  • 7
    • 0037455774 scopus 로고    scopus 로고
    • Biogeochemical processes in a small California estuary. 2. Nitrification activity, community structure and role in nitrogen budgets
    • Caffrey JM, Harrington NE, Solem I, Ward BB (2003) Biogeochemical processes in a small California estuary. 2. Nitrification activity, community structure and role in nitrogen budgets. Mar. Ecol Prog Ser 248:27-40
    • (2003) Mar. Ecol. Prog. Ser. , vol.248 , pp. 27-40
    • Caffrey, J.M.1    Harrington, N.E.2    Solem, I.3    Ward, B.B.4
  • 8
    • 35948999268 scopus 로고    scopus 로고
    • Ammonia oxidation and ammonia-oxidizing Bacteria and Archaea from estuaries with differing histories of hypoxia
    • Caffrey JM, Bano N, Kalanetra K, Hollibaugh JT (2007a) Ammonia oxidation and ammonia-oxidizing Bacteria and Archaea from estuaries with differing histories of hypoxia. ISME J 1:660-662
    • (2007) ISME J. , vol.1 , pp. 660-662
    • Caffrey, J.M.1    Bano, N.2    Kalanetra, K.3    Hollibaugh, J.T.4
  • 9
    • 33846217035 scopus 로고    scopus 로고
    • High nutrient pulses, tidal mixing and biological response in a small California estuary: Variability in nutrient concentrations from decadal to hourly time scales
    • Caffrey JM, Chapin TP, Jannasch HW, Haskins JC (2007b) High nutrient pulses, tidal mixing and biological response in a small California estuary: variability in nutrient concentrations from decadal to hourly time scales. Estuar Coast Shelf Sci 71:368-380
    • (2007) Estuar. Coast Shelf Sci. , vol.71 , pp. 368-380
    • Caffrey, J.M.1    Chapin, T.P.2    Jannasch, H.W.3    Haskins, J.C.4
  • 11
    • 2142689183 scopus 로고    scopus 로고
    • Nitrification and nitrifying bacteria in the Lower Seine River and Estuary (France)
    • Berthe T, Garnier J (2003) Nitrification and nitrifying bacteria in the Lower Seine River and Estuary (France). Appl Environ Microbiol 69:7091-7100
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7091-7100
    • Berthe, T.1    Garnier, J.2
  • 12
    • 8544274531 scopus 로고    scopus 로고
    • Nitrate sources and sinks in Elkhorn Slough, CA: Results from continuous in situ nitrate analyzers
    • Chapin TP, Caffrey JM, Jannasch HW, Coletti L, Haskins JC, Johnson K (2004) Nitrate sources and sinks in Elkhorn Slough, CA: results from continuous in situ nitrate analyzers. Estuaries 27:882-894
    • (2004) Estuaries , vol.27 , pp. 882-894
    • Chapin, T.P.1    Caffrey, J.M.2    Jannasch, H.W.3    Coletti, L.4    Haskins, J.C.5    Johnson, K.6
  • 13
    • 0346336783 scopus 로고    scopus 로고
    • Nutrient biogeochemistry in an upwelling-influenced estuary of the Pacific Northwest (Tillamook Bay, Oregon, USA)
    • Colbert D, McManus J (2003) Nutrient biogeochemistry in an upwelling-influenced estuary of the Pacific Northwest (Tillamook Bay, Oregon, USA). Estuaries 26:1205-1219
    • (2003) Estuaries , vol.26 , pp. 1205-1219
    • Colbert, D.1    McManus, J.2
  • 14
    • 33947110858 scopus 로고    scopus 로고
    • Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: A basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids
    • Coolen M J L, Abbas B, van Bleijswijk J, Hopmans EC, Kuypers M M M, Wakeham SG, Sinninghe Damste JS (2007) Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ Microbiol 9:1001-1016
    • (2007) Environ. Microbiol. , vol.9 , pp. 1001-1016
    • Coolen, M.J.L.1    Abbas, B.2    Van Bleijswijk, J.3    Hopmans, E.C.4    Kuypers, M.M.M.5    Wakeham, S.G.6    Damste, J.S.S.7
  • 15
    • 0029664247 scopus 로고    scopus 로고
    • Seasonal and interannual patterns of sediment-water nutrient and oxygen fluxes in Mobile Bay, Alabama (USA): Regulating factors and ecological significance
    • Cowan JL, Pennock JR, Boynton WR (1996) Seasonal and interannual patterns of sediment-water nutrient and oxygen fluxes in Mobile Bay, Alabama (USA): regulating factors and ecological significance. Mar. Ecol Prog Ser 141:229-245
    • (1996) Mar. Ecol. Prog. Ser. , vol.141 , pp. 229-245
    • Cowan, J.L.1    Pennock, J.R.2    Boynton, W.R.3
  • 16
    • 0346121776 scopus 로고    scopus 로고
    • Benthic primary production and nutrient cycling in sediments with benthic microalgae and transient accumulation of macroalgae
    • Dalsgaard T (2003) Benthic primary production and nutrient cycling in sediments with benthic microalgae and transient accumulation of macroalgae. Limnol Oceanogr 48:2138-2150
    • (2003) Limnol. Oceanogr. , vol.48 , pp. 2138-2150
    • Dalsgaard, T.1
  • 18
    • 49649095625 scopus 로고    scopus 로고
    • Spreading dead zones and consequences for marine ecosystems
    • Milwaukee, WI Diaz RJ, Rosenburg R (2008) Spreading dead zones and consequences for marine ecosystems. Science 321:926-929
    • (2008) Science , vol.321 , pp. 926-929
    • Milwaukee, W.I.1    Diaz, R.J.2    Rosenburg, R.3
  • 20
    • 0030984888 scopus 로고    scopus 로고
    • Nutrient fluxes on an intertidal mudflat in Marennes-Oleron Bay, and influence of the emersion period
    • Feuillet-Girard M, Gouleau D, Blanchard G, Joassard L (1997) Nutrient fluxes on an intertidal mudflat in Marennes-Oleron Bay, and influence of the emersion period. Aquat Living Resour 10:49-58
    • (1997) Aquat. Living Resour. , vol.10 , pp. 49-58
    • Feuillet-Girard, M.1    Gouleau, D.2    Blanchard, G.3    Joassard, L.4
  • 23
    • 34447509294 scopus 로고    scopus 로고
    • Reversal of the net dinitrogen gas flux in coastal marine sediments
    • Fulweiler RW, Nixon SW, Buckley BA, Granger SL (2007) Reversal of the net dinitrogen gas flux in coastal marine sediments. Nature 448:180-182
    • (2007) Nature , vol.448 , pp. 180-182
    • Fulweiler, R.W.1    Nixon, S.W.2    Buckley, B.A.3    Granger, S.L.4
  • 24
    • 32944459274 scopus 로고    scopus 로고
    • Nitrogen fixation and dissimilatory nitrate reduction to ammonium (DNRA) support nitrogen dynamics in Texas estuaries
    • Gardner WS, McCarthy MJ, An S, Sobolev D, Sell KS, Brock D (2006) Nitrogen fixation and dissimilatory nitrate reduction to ammonium (DNRA) support nitrogen dynamics in Texas estuaries. Limnol Oceanogr 51:558-568
    • (2006) Limnol. Oceanogr. , vol.51 , pp. 558-568
    • Gardner, W.S.1    McCarthy, M.J.2    An, S.3    Sobolev, D.4    Sell, K.S.5    Brock, D.6
  • 25
    • 0034640530 scopus 로고    scopus 로고
    • Dynamics of nutrient cycling and related benthic nutrient and oxygen fluxes during a spring phytoplankton bloom in south San Francisco Bay (USA)
    • Grenz C, Cloern JE, Hager SW, Cole BE (2000) Dynamics of nutrient cycling and related benthic nutrient and oxygen fluxes during a spring phytoplankton bloom in south San Francisco Bay (USA). Mar. Ecol Prog Ser 197:67-80
    • (2000) Mar. Ecol. Prog. Ser. , vol.197 , pp. 67-80
    • Grenz, C.1    Cloern, J.E.2    Hager, S.W.3    Cole, B.E.4
  • 26
    • 0000346588 scopus 로고
    • Rates of nitrification, distribution of nitrifying bacteria and nitrate fluxes in different types of sediment from Danish waters
    • Henriksen K, Hansen JI, Blackburn TH (1981) Rates of nitrification, distribution of nitrifying bacteria and nitrate fluxes in different types of sediment from Danish waters. Mar. Biol 61:299-304
    • (1981) Mar. Biol. , vol.61 , pp. 299-304
    • Henriksen, K.1    Hansen, J.I.2    Blackburn, T.H.3
  • 28
    • 37749006703 scopus 로고    scopus 로고
    • Seasonal and short-term variation in denitrification and anammox at a coastal station on the Gulf of Finland, Baltic Sea
    • Hietanen S, Kuparinen J (2008) Seasonal and short-term variation in denitrification and anammox at a coastal station on the Gulf of Finland, Baltic Sea. Hydrobiologia 596:67-77
    • (2008) Hydrobiologia , vol.596 , pp. 67-77
    • Hietanen, S.1    Kuparinen, J.2
  • 29
    • 42149130887 scopus 로고    scopus 로고
    • Effects of short-term anoxia on benthic denitrification, nutrient fluxes and phosphorus forms in coastal Baltic sediment
    • Hietanen S, Lukkari K (2007) Effects of short-term anoxia on benthic denitrification, nutrient fluxes and phosphorus forms in coastal Baltic sediment. Aquat Microb Ecol 49:293-302
    • (2007) Aquat. Microb. Ecol. , vol.49 , pp. 293-302
    • Hietanen, S.1    Lukkari, K.2
  • 30
    • 0002257636 scopus 로고
    • Benthic NH4 + and NO3 - Flux following sedimentation of a spring phytoplankton bloom in Aarhus Bight, Denmark
    • Jensen MH, Lomstein E, Sorensen J (1990) Benthic NH4 + and NO3 - flux following sedimentation of a spring phytoplankton bloom in Aarhus Bight, Denmark. Mar. Ecol Prog Ser 61:87-96
    • (1990) Mar. Ecol. Prog. Ser. , vol.61 , pp. 87-96
    • Jensen, M.H.1    Lomstein, E.2    Sorensen, J.3
  • 31
    • 0028972895 scopus 로고
    • Influence of sulfide inhibition of nitrification on nitrogen regeneration in sediments
    • Joye SB, Hollibaugh JT (1995) Influence of sulfide inhibition of nitrification on nitrogen regeneration in sediments. Science 270:623-625
    • (1995) Science , vol.270 , pp. 623-625
    • Joye, S.B.1    Hollibaugh, J.T.2
  • 32
    • 0001554798 scopus 로고
    • Membrane inlet mass spectrometer for rapid high-precision determination of N2, O2 and Ar in environmental water samples
    • Kana TM, Darkangelo C, Hunt MD, Oldham JB, Bennett GE, Cornwell JC (1994) Membrane inlet mass spectrometer for rapid high-precision determination of N2, O2 and Ar in environmental water samples. Anal Chem 66:4166-4170
    • (1994) Anal. Chem. , vol.66 , pp. 4166-4170
    • Kana, T.M.1    Darkangelo, C.2    Hunt, M.D.3    Oldham, J.B.4    Bennett, G.E.5    Cornwell, J.C.6
  • 35
    • 0002624066 scopus 로고
    • Sedimentwater oxygen and nutrient exchanges along a depth gradient in the Baltic Sea
    • Koop K, Boynton WR, Wulff F, Carman R (1990) Sedimentwater oxygen and nutrient exchanges along a depth gradient in the Baltic Sea. Mar. Ecol Prog Ser 63:65-77
    • (1990) Mar. Ecol. Prog. Ser. , vol.63 , pp. 65-77
    • Koop, K.1    Boynton, W.R.2    Wulff, F.3    Carman, R.4
  • 37
    • 0029668816 scopus 로고    scopus 로고
    • Production within dense mats of the filamentous macroalga Chaetomorpha linum in relation to light and nutrient availability
    • Krause-Jensen D, McGlathery K, Rysgaard S, Christensen PB (1996) Production within dense mats of the filamentous macroalga Chaetomorpha linum in relation to light and nutrient availability. Mar. Ecol Prog Ser 134:207-216
    • (1996) Mar. Ecol. Prog. Ser. , vol.134 , pp. 207-216
    • Krause-Jensen, D.1    McGlathery, K.2    Rysgaard, S.3    Christensen, P.B.4
  • 38
    • 34249862426 scopus 로고    scopus 로고
    • Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea
    • Lam P, Jensen MM, Lavik G, McGinnis DF and others (2007) Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proc Natl Acad Sci USA 104:7104-7109
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 7104-7109
    • Lam, P.1    Jensen, M.M.2    Lavik, G.3    McGinnis, D.F.4
  • 42
    • 0034687324 scopus 로고    scopus 로고
    • Diel variation in microphytobenthic productivity in areas of different tidal amplitude
    • Miles A, Sundbäck K (2000) Diel variation in microphytobenthic productivity in areas of different tidal amplitude. Mar. Ecol Prog Ser 205:11-22
    • (2000) Mar. Ecol. Prog. Ser. , vol.205 , pp. 11-22
    • Miles, A.1    Sundbäck, K.2
  • 43
    • 0037307713 scopus 로고    scopus 로고
    • Sediment oxygen consumption and vertical flux of organic matter in the Seto Inland Sea, Japan
    • Nakamura Y (2003) Sediment oxygen consumption and vertical flux of organic matter in the Seto Inland Sea, Japan. Estuar Coast Shelf Sci 56:213-220
    • (2003) Estuar. Coast Shelf Sci. , vol.56 , pp. 213-220
    • Nakamura, Y.1
  • 44
    • 0030302997 scopus 로고    scopus 로고
    • Nitrogen fluxes through the upper estuary of the Great Ouse, England: The role of the bottom sediments
    • Nedwell DB, Trimmer M (1996) Nitrogen fluxes through the upper estuary of the Great Ouse, England: the role of the bottom sediments. Mar. Ecol Prog Ser 142:273-286
    • (1996) Mar. Ecol. Prog. Ser. , vol.142 , pp. 273-286
    • Nedwell, D.B.1    Trimmer, M.2
  • 48
    • 67649574734 scopus 로고    scopus 로고
    • Benthic metabolism and the fate of dissolved inorganic nitrogen in intertidal sediments
    • Porubsky WP, Weston NB, Joye SB (2009) Benthic metabolism and the fate of dissolved inorganic nitrogen in intertidal sediments. Estuar Coast Shelf Sci 83:392-402
    • (2009) Estuar. Coast Shelf Sci. , vol.83 , pp. 392-402
    • Porubsky, W.P.1    Weston, N.B.2    Joye, S.B.3
  • 49
    • 41949095245 scopus 로고    scopus 로고
    • Nutrient biogeochemistry in a Gulf of Mexico subterranean estuary and groundwaterderived fluxes to the coastal ocean
    • Santos IR, Burnett WC, Chanton J, Mwashote B, Suryaputra I G N A, Dittmar T (2008) Nutrient biogeochemistry in a Gulf of Mexico subterranean estuary and groundwaterderived fluxes to the coastal ocean. Limnol Oceanogr 53:705-718
    • (2008) Limnol. Oceanogr. , vol.53 , pp. 705-718
    • Santos, I.R.1    Burnett, W.C.2    Chanton, J.3    Mwashote, B.4    Suryaputra, I.G.N.A.5    Dittmar, T.6
  • 51
    • 0031390066 scopus 로고    scopus 로고
    • Annual cycle and interannual variability of ecosystem metabolism in a temperate climate embayment
    • Smith SV, Hollibaugh JT (1997) Annual cycle and interannual variability of ecosystem metabolism in a temperate climate embayment. Ecol Monogr 67:509-533
    • (1997) Ecol. Monogr. , vol.67 , pp. 509-533
    • Smith, S.V.1    Hollibaugh, J.T.2
  • 52
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • Treusch AH, Leininger S, Kletzin A, Schuster SC, Klenk HP, Schleper C (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7:1985-1995
    • (2005) Environ. Microbiol. , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kletzin, A.3    Schuster, S.C.4    Klenk, H.P.5    Schleper, C.6
  • 53
    • 1342286730 scopus 로고    scopus 로고
    • Description of trophic status, hyperautotrophy and dystrophy of a coastal lagoon through a potential oxygen production and consumption index-TOSI: Trophic oxygen status index
    • Viaroli P, Christian RR (2003) Description of trophic status, hyperautotrophy and dystrophy of a coastal lagoon through a potential oxygen production and consumption index-TOSI: trophic oxygen status index. Ecol Ind 3:237-250
    • (2003) Ecol. Ind. , vol.3 , pp. 237-250
    • Viaroli, P.1    Christian, R.R.2
  • 54
    • 0030772878 scopus 로고    scopus 로고
    • Factors controlling seasonal variability of benthic ammonium release and oxygen uptake in Alfacs Bay (Ebro Delta, NW Mediterranean)
    • Vidal M, Morgui JA, Latasa M, Romero J, Camp J (1997) Factors controlling seasonal variability of benthic ammonium release and oxygen uptake in Alfacs Bay (Ebro Delta, NW Mediterranean). Hydrobiologia 350:169-178
    • (1997) Hydrobiologia , vol.350 , pp. 169-178
    • Vidal, M.1    Morgui, J.A.2    Latasa, M.3    Romero, J.4    Camp, J.5
  • 55
    • 0028916453 scopus 로고
    • Detection of ammonium-oxidizing bacteria of the beta-subclass of the class Proteobacteria in aquatic samples with the PCR
    • Voytek MA, Ward BB (1995) Detection of ammonium-oxidizing bacteria of the beta-subclass of the class Proteobacteria in aquatic samples with the PCR. Appl Environ Microbiol 61:1444-1450
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1444-1450
    • Voytek, M.A.1    Ward, B.B.2
  • 56
    • 0028160137 scopus 로고
    • Fluorometric analysis of chlorophyll a in the presence of chlorophyll b and phaeopigments
    • Welschmeyer NA (1994) Fluorometric analysis of chlorophyll a in the presence of chlorophyll b and phaeopigments. Limnol Oceanogr 39:1985-1992
    • (1994) Limnol. Oceanogr. , vol.39 , pp. 1985-1992
    • Welschmeyer, N.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.