Utilizing ion-pairing hydrophilic interaction chromatography solid phase extraction for efficient glycopeptide enrichment in glycoproteomics

Analytical Chemistry

Volumn 82, Issue 13, 2010, Pages 5598-5609

  Mysling, Simon ^a   Palmisano, Giuseppe ^a   Hojrup, Peter ^a   Thaysen Andersen, Morten ^a,b  

^a UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^b MACQUARIE UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPEPTIDES; GLYCOPROTEOMICS; HYDROPHILIC INTERACTION CHROMATOGRAPHY; IMPROVED METHODS; ION PAIRING; ION SIGNALS; LC-ESI-MS/MS; MALDI TOF MS; MICROCOLUMNS; MOBILE PHASE; MOBILE PHASIS; PROTEIN GLYCOSYLATION; SAMPLE COMPLEXITY; SOLID-PHASE EXTRACTION; STRUCTURAL CHARACTERIZATION; SYSTEMATIC STUDY;

ACETONITRILE; GLYCOPROTEINS; HYDROPHILICITY; IONS; LIQUID CHROMATOGRAPHY; ORGANIC ACIDS; PEPTIDES;

EXTRACTION;

GLYCOPEPTIDE; IMMUNOGLOBULIN G;

ANIMAL; ARTICLE; BLOOD; CHEMISTRY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HUMAN; ISOLATION AND PURIFICATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLISM; METHODOLOGY; MOUSE; PROTEOMICS; SOLID PHASE EXTRACTION; PROCEDURES;

ANIMALS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CHROMATOGRAPHY, LIQUID; GLYCOPEPTIDES; HUMANS; IMMUNOGLOBULIN G; MICE; PROTEOMICS; SOLID PHASE EXTRACTION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 77954203412     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac100530w     Document Type: Article

References (37)

1. Ohtsubo, K. and Marth, J. D. Cell 2006, 126, 855-867
2. Varki, A. Glycobiology 1993, 3, 97-130
3. Gagneux, P. and Varki, A. Glycobiology 1999, 9, 747-755
4. Haltiwanger, R. S. and Lowe, J. B. Annu. Rev. Biochem. 2004, 73, 491-537
5. Moens, S. and Vanderleyden, J. Arch. Microbiol. 1997, 168, 169-175
6. Dell, A. and Morris, H. R. Science 2001, 291, 2351-2356
7. Peterman, S. M. and Mulholland, J. J. J. Am. Soc. Mass Spectrom. 2006, 17, 168-179
8. Bunkenborg, J., Pilch, B. J., Podtelejnikov, A. V., and Wisniewski, J. R. Proteomics 2004, 4, 454-465
9. Hirabayashi, J. Glycoconjugate J. 2004, 21, 35-40
10. Alley, W. R., Jr., Mechref, Y., and Novotny, M. V. Rapid Commun. Mass Spectrom. 2009, 23, 495-505
11. Larsen, M. R., Hojrup, P., and Roepstorff, P. Mol. Cell. Proteomics 2005, 4, 107-119
12. Larsen, M. R., Jensen, S. S., Jakobsen, L. A., and Heegaard, N. H. H. Mol. Cell. Proteomics 2007, 6, 1778-1787
13. Liu, T., Qian, W. J., Gritsenko, M. A., Camp, D. G., 2nd, Monroe, M. E., Moore, R. J., and Smith, R. D. J. Proteome Res. 2005, 4, 2070-2080
14. Zhang, H., Li, X. J., Martin, D. B., and Aebersold, R. Nat. Biotechnol. 2003, 21, 660-666
15. Wuhrer, M., Catalina, M. I., Deelder, A. M., and Hokke, C. H. J. Chromatogr., B: Anal. Technol. Biomed. Life Sci. 2007, 849, 115-128
16. Hagglund, P., Bunkenborg, J., Elortza, F., Jensen, O. N., and Roepstorff, P. J. Proteome Res. 2004, 3, 556-566
17. Takegawa, Y., Deguchi, K., Ito, H., Keira, T., Nakagawa, H., and Nishimura, S. I. J. Sep. Sci. 2006, 29, 2533-2540
18. Takegawa, Y., Deguchi, K., Keira, T., Ito, H., Nakagawa, H., and Nishimura, S. J. Chromatogr., A 2006, 1113, 177-181
19. Takegawa, Y., Ito, H., Keira, T., Deguchi, K., Nakagawa, H., and Nishimura, S. J. Sep. Sci. 2008, 31, 1585-1593
20. Thaysen-Andersen, M., Thogersen, I. B., Lademann, U., Offenberg, H., Giessing, A. M., Enghild, J. J., Nielsen, H. J., Brunner, N., and Hojrup, P. Biochim. Biophys. Acta 2008, 1784, 455-463
21. Thaysen-Andersen, M., Thogersen, I. B., Nielsen, H. J., Lademann, U., Brunner, N., Enghild, J. J., and Hojrup, P. Mol. Cell. Proteomics 2007, 6, 638-647
22. Wuhrer, M., de Boer, A. R., and Deelder, A. M. Mass Spectrom. Rev. 2009, 28, 192-206
23. Wuhrer, M., Koeleman, C. A., Hokke, C. H., and Deelder, A. M. Anal. Chem. 2005, 77, 886-894
24. Yu, Y. Q., Gilar, M., Kaska, J., and Gebler, J. C. Rapid Commun. Mass Spectrom. 2005, 19, 2331-2336
25. Zhang, J. and Wang, D. I. J. Chromatogr., B: Biomed. Sci. Appl. 1998, 712, 73-82
26. Alpert, A. J. J. Chromatogr. 1990, 499, 177-196
27. Hemstrom, P. and Irgum, K. J. Sep. Sci. 2006, 29, 1784-1821
28. Ding, W., Hill, J. J., and Kelly, J. Anal. Chem. 2007, 79, 8891-8899
29. Ding, W., Nothaft, H., Szymanski, C. M., and Kelly, J. Mol. Cell. Proteomics 2009, 8, 2170-2185
30. Thaysen-Andersen, M., Mysling, S., and Hojrup, P. Anal. Chem. 2009, 81, 3933-3943
31. Gagliardi, L. G., Castells, C. B., Rafols, C., Roses, M., and Bosch, E. Anal. Chem. 2007, 79, 3180-3187
32. White, S. H. and Wimley, W. C. Biochim. Biophys. Acta 1998, 1376, 339-352
33. Wimley, W. C., Creamer, T. P., and White, S. H. Biochemistry 1996, 35, 5109-5124
34. Wimley, W. C., Gawrisch, K., Creamer, T. P., and White, S. H. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 2985-2990
35. Ishihama, Y., Oda, Y., Tabata, T., Sato, T., Nagasu, T., Rappsilber, J., and Mann, M. Mol. Cell. Proteomics 2005, 4, 1265-1272
36. Naidong, W. J. Chromatogr., B: Anal. Technol. Biomed. Life Sci. 2003, 796, 209-224
37. Dunitz, J. D. and Taylor, R. Chem. - Eur. J. 1997, 3, 89-98