Near full-length sequence of HIV type 1 subtype J strain 04CMU11421 from Cameroon

AIDS Research and Human Retroviruses

Volumn 26, Issue 6, 2010, Pages 693-697

  Yamaguchi, Julie ^a   Vallari, Ana ^a   Ngansop, Charlotte ^b   Makamche, Florence ^b   Ndembi, Nicaise ^c,d   Mbanya, Dora ^b   Kaptué, Lazare ^b,d   Gürtler, Lutz G ^e   Devare, Sushil G ^a   Brennan, Catherine A ^a  

^a ABBOTT DIAGNOSTICS   (United States)

^b UNIVERSITY OF YAOUNDÉ I   (Cameroon)

^c MEDICAL RESEARCH COUNCIL   (United Kingdom)

^d Higher Institute of Public Health Sciences   (Cameroon)

^e GOETHE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ENVELOPE PROTEIN; GAG PROTEIN; POL PROTEIN; VIRUS RNA;

ARTICLE; CAMEROON; ENVELOPE GENE; GENE SEQUENCE; HUMAN IMMUNODEFICIENCY VIRUS 1; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; VIRUS GENE; VIRUS STRAIN; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; GENOTYPE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; SEQUENCE HOMOLOGY; VIROLOGY;

CAMEROON; CLUSTER ANALYSIS; GENOTYPE; HIV INFECTIONS; HIV-1; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 77954195017     PISSN: 08892229     EISSN: None     Source Type: Journal    
DOI: 10.1089/aid.2009.0305     Document Type: Article

References (18)

1. http:==hiv-web.lanl.gov
2. Plantier J-C, Leoz M, Dickerson JE, De Oliveira F, Cordonnier F, Lemée V, Damond F, Robertson DL, and Simon F: A new human immunodeficiency virus derived from gorillas. Nature Med 2009;15:871-872.
3. -2006 report on the global AIDS epidemic. UNAIDS=WHO, May 2006. Available at http:==data.unaids.org=pub=GlobalReport= 2006=annex2-data-en.xls.
4. Gao F, Bailes E, Robertson DL, Chen Y, Rodenburg CM, Michael SF, Cummins LB, Arthur LO, Peeters M, George M. Shaw GM, et al.: Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes. Nature 1999;397:436-441.
5. Yamaguchi J, Bodelle P, Vallari AS, Coffey R, McArthur CP, Schochetman G, Devare, SG, and Brennan CA: HIV infections in northwestern Cameroon: Identification of HIV type 1 Group O and dual HIV type 1 Group M and Group O infections. AIDS Res Hum Retroviruses 2004;20:944-957.
6. Laukkanen T, Albert J, Littsola K, Green SD, Carr JK, Leitner T, McCutchan FE, and Salminen, MO: Virtually full-length sequences of HIV type 1 subtype J reference strains. AIDS Res Hum Retroviruses 1999;15:293-297.
7. Abecasis AB, Lemey P, Vidal N, de Oliveira T, Peeters M, Camacho R, Shapiro B, Rambaut A, and Vandamme A-M: Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: Subtype G is a circulating recombinant form. J Virol 2007;81:8543-8551.
8. Mokili JLK, Wade CM, Burns SM, Cutting WAM, Bopopi JM, Green SDR, Peutherer JF, and Simmonds P: Genetic heterogeneity of HIV type 1 subtypes in Kimpese, rural Democratic Republic of Congo. AID Res Hum Retroviruses 1999;15:655-664.
9. Kita K, Ndembi N, Ekwalanga M, Ido E, Kazadi R, Bikandou B, Takehisa J, Takemura T, Kageyama S, Tanaka J, Parra HJ, Hayami M, and Ichimura H: Genetic diversity of HIV type 1 in Likasi, southeast of the Democratic Republic of Congo. AIDS Res Hum Retroviruses 2004;20:1352-1357. (Pubitemid 40065931)
10. Kiwanuka N, Layendecker O, Quinn TC, Wawer MJ, Shepherd J, Robb M, Kigozi G, Kagaayi J, Serwadda D, Makumbi FE, Reynolds SJ, and Gray RH: HIV-1 subtypes and differences in heterosexual HIV transmission among discordant couples in Rakai, Uganda. AIDS 2009;23(18): 2479-2484.
11. Bártolo I, Epalanga M, Bartolomeu J, Fonseca M, Mendes A, Gama A, and Taveira N: High genetic diversity of human immunodeficiency virus type 1 in Angola. AIDS Res Hum Retroviruses 2005;21:306-310.
12. Zeh C, Pieniazek D, Agwale SM, Robbins KE, Odama L, Sani-Gwarzo N, Gboun MS, Inyang US, Folks TM, Wambebe C, and Kalish ML: Nigerian HIV type 2 subtype A and B from heterotypic HIV type 1 and HIV type 2 or monotypic HIV type 2 infections. AIDS Res Hum Retroviruses 2005;21:17-27.
13. Trask SA, Derdeyn CA, Fideli U, Chen Y, Meleth S, Kasolo F, Musonda R, Hunter E, Gao F, Allen S, and Hahn BH: Molecular epidemiology of human immunodeficiency virus type 1 transmission in a heterosexual cohort of discordant couples in Zambia. J Virol 2002;76:397-405.
14. Holguín A, Á lvarez A, and Soriano V: HIV-1 subtype J recombinant viruses in Spain. AIDS Res Hum Retroviruses 2002;18:523-529.
15. Vergne L, Peeters M, Mpoudi-Ngole E, Bourgeois A, Liegeois F, Toure-Kane C, Mboup S, Mulanga-Kabeya C, Saman E, Jourdan J, Reynes J, and Delaporte E: Genetic diversity of protease and reverse transcriptase sequences in non-subtype-B human immunodeficiency virus type 1 strains: Evidence of many minor drug resistance mutations in treatment-naive patients. J Clin Microbiol 2000;38:3919-3925.
16. Cuevas MT, Ruibal I, Villahermosa ML, Diaz H, Delgado E, Parga EV, Perez-Alvarez L, de Armas MB, Cuevas L, Medrano L, Noa E, Osmanov S, Najera R, and Thomson MM: High HIV-1 genetic diversity in Cuba. AIDS 2002;16:1643-1653.
17. Fonjungo PN, Mpoudi EN, Torimiro JN, Alemnji GA, Eno LT, Lyonga EJ, Nkengasong JN, Lal RB, Rayfield M, Kalish ML, Folks TM, and Pieniazek D: Human immunodeficiency virus type 1 group M protease in Cameroon: Genetic diversity and protease inhibitor mutational features. J Clin Microbiol 2002;40:837-845.
18. Yahi N, Fantini J, Tourres C, Tivoli N, Koch N, and Tamalet C: Use of drug resistance sequence data for the systematic detection of non-B human immunodeficiency virus type 1 (HIV-1) subtypes: How to create a sentinel site for monitoring the genetic diversity of HIV-1 at a country scale. J Infect Dis 2001;183:1311-1317.