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Volumn 43, Issue 4, 2010, Pages 510-519

Mining connections between chemicals, proteins, and diseases extracted from Medline annotations

Author keywords

Drug discovery; Literature based discovery; Text mining

Indexed keywords

BIOLOGICAL ACTIVITIES; BIOMEDICAL LITERATURE; CALCULATING PRECISION; DATA SOURCE; DRUG DISCOVERY; DRUG RESEARCH; MEDLINE; PROTEIN ANNOTATION; RETINOIC ACIDS; TEXT MINING; VALPROIC ACID;

EID: 77954142043     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2010.03.008     Document Type: Article
Times cited : (58)

References (39)
  • 1
    • 77954145042 scopus 로고    scopus 로고
    • NLM. PubChem; Available from
    • NLM. PubChem; 2006. Available from: http://pubchem.ncbi.nlm.nih.gov/2008.
    • (2006)
  • 2
    • 77954145466 scopus 로고    scopus 로고
    • National library of medicine
    • Available from
    • National library of medicine. MEDLINE. Available from: http://www.nlm.nih.gov/pubs/factsheets/medline.html.
    • MEDLINE
  • 3
    • 77954143956 scopus 로고    scopus 로고
    • Extracting drug activity terms from Medline annotations
    • American Medical Informatics Association, March
    • Extracting drug activity terms from Medline annotations. In: Proceedings: Summit on Translational Bioinformatics. American Medical Informatics Association, March; 2008.
    • (2008) In: Proceedings: Summit on Translational Bioinformatics
  • 4
    • 0025265976 scopus 로고
    • Medical literature as a potential source of new knowledge
    • Swanson D.R. Medical literature as a potential source of new knowledge. Bull Med Libr Assoc 1990, 78(1):29-37.
    • (1990) Bull Med Libr Assoc , vol.78 , Issue.1 , pp. 29-37
    • Swanson, D.R.1
  • 5
    • 0022786956 scopus 로고
    • Fish oil, Raynaud's syndrome, and undiscovered public knowledge
    • Swanson D.R. Fish oil, Raynaud's syndrome, and undiscovered public knowledge. Perspect Biol Med 1986, 30(1):7-18.
    • (1986) Perspect Biol Med , vol.30 , Issue.1 , pp. 7-18
    • Swanson, D.R.1
  • 6
    • 0024031265 scopus 로고
    • Migraine and magnesium: eleven neglected connections
    • Swanson D.R. Migraine and magnesium: eleven neglected connections. Perspect Biol Med 1988, 31(4):526-557.
    • (1988) Perspect Biol Med , vol.31 , Issue.4 , pp. 526-557
    • Swanson, D.R.1
  • 7
    • 0032211335 scopus 로고    scopus 로고
    • Using ARROWSMITH: a computer-assisted approach to formulating and assessing scientific hypotheses
    • Smalheiser N.R., Swanson D.R. Using ARROWSMITH: a computer-assisted approach to formulating and assessing scientific hypotheses. Comput Methods Programs Biomed 1998, 57(3):149-153.
    • (1998) Comput Methods Programs Biomed , vol.57 , Issue.3 , pp. 149-153
    • Smalheiser, N.R.1    Swanson, D.R.2
  • 8
    • 0032641366 scopus 로고    scopus 로고
    • Literature-based discovery by lexical statistics
    • Lindsay R.K., Gordon M.D. Literature-based discovery by lexical statistics. J Am Soc Inf Sci 1999, 50(7):574-587.
    • (1999) J Am Soc Inf Sci , vol.50 , Issue.7 , pp. 574-587
    • Lindsay, R.K.1    Gordon, M.D.2
  • 9
    • 0035337361 scopus 로고    scopus 로고
    • Using concepts in literature-based discovery: simulating Swanson's Raynaud-fish oil and migraine-magnesium discoveries
    • Weeber M., Klein H., den Berg L.T.W., Vos R. Using concepts in literature-based discovery: simulating Swanson's Raynaud-fish oil and migraine-magnesium discoveries. J Am Soc Inf Sci Tech 2001, 52(7):548-557.
    • (2001) J Am Soc Inf Sci Tech , vol.52 , Issue.7 , pp. 548-557
    • Weeber, M.1    Klein, H.2    den Berg, L.T.W.3    Vos, R.4
  • 10
    • 77954143112 scopus 로고    scopus 로고
    • National Library of Medicine
    • Available from
    • National Library of Medicine. Unified Medical Language System fact sheet. Available from: http://www.nlm.nih.gov/pubs/factsheets/umls.html.
    • Unified Medical Language System fact sheet
  • 11
    • 0035755177 scopus 로고    scopus 로고
    • MeSHmap: a text mining tool for MEDLINE
    • Srinivasan P. MeSHmap: a text mining tool for MEDLINE. Proc AMIA Symp 2001, 642-646.
    • (2001) Proc AMIA Symp , pp. 642-646
    • Srinivasan, P.1
  • 12
    • 0004234233 scopus 로고    scopus 로고
    • Available from
    • Medical subject headings. Available from: http://www.nlm.nih.gov/mesh/meshhome.html.
    • Medical subject headings
  • 13
    • 1342330525 scopus 로고    scopus 로고
    • Knowledge discovery by automated identification and ranking of implicit relationships
    • Wren J.D., Bekeredjian R., Stewart J.A., Shohet R.V., Garner H.R. Knowledge discovery by automated identification and ranking of implicit relationships. Bioinformatics 2004, 20(3):389-398.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 389-398
    • Wren, J.D.1    Bekeredjian, R.2    Stewart, J.A.3    Shohet, R.V.4    Garner, H.R.5
  • 14
    • 10844244599 scopus 로고    scopus 로고
    • TransMiner: mining transitive associations among biological objects from text
    • Narayanasamy V., Mukhopadhyay S., Palakal M., Potter D.A. TransMiner: mining transitive associations among biological objects from text. J Biomed Sci 2004, 11(6):864-873.
    • (2004) J Biomed Sci , vol.11 , Issue.6 , pp. 864-873
    • Narayanasamy, V.1    Mukhopadhyay, S.2    Palakal, M.3    Potter, D.A.4
  • 15
    • 33750742458 scopus 로고    scopus 로고
    • Using statistical and knowledge-based approaches for literature-based discovery
    • Yetisgen-Yildiz M., Pratt W. Using statistical and knowledge-based approaches for literature-based discovery. J Biomed Inform 2006, 39(6):600-611.
    • (2006) J Biomed Inform , vol.39 , Issue.6 , pp. 600-611
    • Yetisgen-Yildiz, M.1    Pratt, W.2
  • 16
    • 36349015677 scopus 로고    scopus 로고
    • Discovering implicit associations between genes and hereditary diseases
    • Seki K., Mostafa J. Discovering implicit associations between genes and hereditary diseases. Pac Symp Biocomput 2007, 316-327.
    • (2007) Pac Symp Biocomput , pp. 316-327
    • Seki, K.1    Mostafa, J.2
  • 18
    • 6344276917 scopus 로고    scopus 로고
    • Mining MEDLINE for implicit links between dietary substances and diseases
    • Srinivasan P., Libbus B. Mining MEDLINE for implicit links between dietary substances and diseases. Bioinformatics 2004, 20(Suppl. 1):i290-i296.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1
    • Srinivasan, P.1    Libbus, B.2
  • 19
    • 33646567815 scopus 로고    scopus 로고
    • Conceptual biology, hypothesis discovery, and text mining: Swanson's legacy
    • Bekhuis T. Conceptual biology, hypothesis discovery, and text mining: Swanson's legacy. Biomed Digit Libr 2006, 3:32.
    • (2006) Biomed Digit Libr , vol.3 , pp. 32
    • Bekhuis, T.1
  • 20
    • 77952768838 scopus 로고    scopus 로고
    • Supporting discovery in medicine by association rule mining in Medline and UMLS
    • Hristovski D., Stare J., Peterlin B., Dzeroski S. Supporting discovery in medicine by association rule mining in Medline and UMLS. Medinfo 2001, 10(Pt 2):1344-1348.
    • (2001) Medinfo , vol.10 , Issue.PART 2 , pp. 1344-1348
    • Hristovski, D.1    Stare, J.2    Peterlin, B.3    Dzeroski, S.4
  • 21
    • 0037545622 scopus 로고    scopus 로고
    • Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide
    • Weeber M., Vos R., Klein H., De Jong-Van Den Berg L.T., Aronson A.R., Molema G. Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide. J Am Med Inform Assoc 2003, 10(3):252-259.
    • (2003) J Am Med Inform Assoc , vol.10 , Issue.3 , pp. 252-259
    • Weeber, M.1    Vos, R.2    Klein, H.3    De Jong-Van Den Berg, L.T.4    Aronson, A.R.5    Molema, G.6
  • 23
    • 67649319239 scopus 로고    scopus 로고
    • A new evaluation methodology for literature-based discovery systems
    • Yetisgen-Yildiz M., Pratt W. A new evaluation methodology for literature-based discovery systems. J Biomed Inform 2009, 42(4):633-643.
    • (2009) J Biomed Inform , vol.42 , Issue.4 , pp. 633-643
    • Yetisgen-Yildiz, M.1    Pratt, W.2
  • 26
    • 38349002957 scopus 로고    scopus 로고
    • Mining gene-disease relationships from biomedical literature: weighting protein-protein interactions and connectivity measures
    • Gonzalez G., Uribe J.C., Tari L., Brophy C., Baral C. Mining gene-disease relationships from biomedical literature: weighting protein-protein interactions and connectivity measures. Pac Symp Biocomput 2007, 28-39.
    • (2007) Pac Symp Biocomput , pp. 28-39
    • Gonzalez, G.1    Uribe, J.C.2    Tari, L.3    Brophy, C.4    Baral, C.5
  • 27
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa M., Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28(1):27-30.
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 29
    • 0023692177 scopus 로고
    • Valproate: a new drug in migraine prophylaxis
    • Sorensen K.V. Valproate: a new drug in migraine prophylaxis. Acta Neurol Scand 1988, 78(4):346-348.
    • (1988) Acta Neurol Scand , vol.78 , Issue.4 , pp. 346-348
    • Sorensen, K.V.1
  • 30
    • 0033655017 scopus 로고    scopus 로고
    • Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts
    • Stapley B.J., Benoit G. Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts. Pac Symp Biocomput 2000, 529-540.
    • (2000) Pac Symp Biocomput , pp. 529-540
    • Stapley, B.J.1    Benoit, G.2
  • 31
    • 77954145861 scopus 로고    scopus 로고
    • Available from
    • MeSH trees file. Available from: http://www.nlm.nih.gov/mesh/2009/download/mtr_abt.html.
    • MeSH trees file
  • 32
    • 0021697621 scopus 로고
    • Interactions of Mg and K on cerebral vessels - aspects in view of stroke. Review of present status and new findings
    • Altura B.T., Altura B.M. Interactions of Mg and K on cerebral vessels - aspects in view of stroke. Review of present status and new findings. Magnesium 1984, 3(4-6):195-211.
    • (1984) Magnesium , vol.3 , Issue.4-6 , pp. 195-211
    • Altura, B.T.1    Altura, B.M.2
  • 33
    • 0015611638 scopus 로고
    • Migraine therapy with magnesium glutamate
    • passim
    • Vosgerau H. Migraine therapy with magnesium glutamate. Ther Ggw 1973, 112(4):640. passim.
    • (1973) Ther Ggw , vol.112 , Issue.4 , pp. 640
    • Vosgerau, H.1
  • 34
    • 0022333103 scopus 로고
    • Calcium antagonist properties of magnesium: implications for antimigraine actions
    • Altura B.M. Calcium antagonist properties of magnesium: implications for antimigraine actions. Magnesium 1985, 4(4):169-175.
    • (1985) Magnesium , vol.4 , Issue.4 , pp. 169-175
    • Altura, B.M.1
  • 35
    • 20144377557 scopus 로고    scopus 로고
    • The neurobiology of zinc in health and disease
    • Frederickson C.J., Koh J.Y., Bush A.I. The neurobiology of zinc in health and disease. Nat Rev Neurosci 2005, 6(6):449-462.
    • (2005) Nat Rev Neurosci , vol.6 , Issue.6 , pp. 449-462
    • Frederickson, C.J.1    Koh, J.Y.2    Bush, A.I.3
  • 36
    • 34648816863 scopus 로고    scopus 로고
    • Retinoic acid in the development, regeneration and maintenance of the nervous system
    • Maden M. Retinoic acid in the development, regeneration and maintenance of the nervous system. Nat Rev Neurosci 2007, 8(10):755-765.
    • (2007) Nat Rev Neurosci , vol.8 , Issue.10 , pp. 755-765
    • Maden, M.1
  • 37
    • 8144222411 scopus 로고    scopus 로고
    • Headaches in idiopathic intracranial hypertension. A review of ten years in a Columbian hospital
    • Volcy-Gomez M., Uribe C.S. Headaches in idiopathic intracranial hypertension. A review of ten years in a Columbian hospital. Rev Neurol 2004, 39(5):419-423.
    • (2004) Rev Neurol , vol.39 , Issue.5 , pp. 419-423
    • Volcy-Gomez, M.1    Uribe, C.S.2
  • 38
    • 11144300852 scopus 로고    scopus 로고
    • Unilateral Darier's disease associated with migraine headache responsive to isotretinoin
    • Rotunda A.M., Cotliar J., Haley J.C., Craft N. Unilateral Darier's disease associated with migraine headache responsive to isotretinoin. J Am Acad Dermatol 2005, 52(1):175-176.
    • (2005) J Am Acad Dermatol , vol.52 , Issue.1 , pp. 175-176
    • Rotunda, A.M.1    Cotliar, J.2    Haley, J.C.3    Craft, N.4
  • 39
    • 1842271765 scopus 로고    scopus 로고
    • CD23-mediated nitric oxide synthase pathway induction in human keratinocytes is inhibited by retinoic acid derivatives
    • Becherel P.A., Le Goff L., Ktorza S., Chosidow O., Frances C., Issaly F., et al. CD23-mediated nitric oxide synthase pathway induction in human keratinocytes is inhibited by retinoic acid derivatives. J Invest Dermatol 1996, 106(6):1182-1186.
    • (1996) J Invest Dermatol , vol.106 , Issue.6 , pp. 1182-1186
    • Becherel, P.A.1    Le Goff, L.2    Ktorza, S.3    Chosidow, O.4    Frances, C.5    Issaly, F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.