Quantitative trait loci of acid detergent fiber and grain chemical composition in hulled × hull-less barley population

Euphytica

Volumn 172, Issue 3, 2010, Pages 405-418

  Abdel Haleem, Hussein ^a,b   Bowman, Jan ^a   Giroux, Mike ^a   Kanazin, Vladimir ^a   Talbert, Hope ^a   Surber, Lisa ^a   Blake, Tom ^a  

^a MONTANA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

Author keywords

Barley; Fiber; Hull less; Net energy available for maintenance; QTL; Starch

Indexed keywords

ANIMALIA; CARYOPSIS; HORDEUM; ZEA MAYS;

EID: 77954034623     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-009-0066-6     Document Type: Article

References (78)

1. Abdel-Haleem H, Bowman J, Kanazin V et al. (2009) Quantitative trait loci of dry matter digestibility and particle size traits in two-rowed × six-rowed barley population. Euphytica. doi: 10. 1007/s10681-009-0076-4.
2. Almirall M, Brufau J, Esteve-Garcia E et al (1995) The differences in intestinal viscosity produced by barley and beta-glucanase alter digesta enzyme activities and ileal nutrient digestibilities more in broiler chicks than in cocks. J Nutr 125: 947-955.
3. Association of Official Analytical Chemists (AOAC) (1999) Official methods of analysis, 18th edn. Association of Official Analytical Chemists, Arlington.
4. Beames RM, Helm JH, Eggum BO et al (1996) A comparison of methods for measuring the nutritive value for pigs of a range of hulled and hull-less barley cultivars. Anim Feed Sci Technol 62: 189-201.
5. Becker J, Heun M (1995) Barley microsatellites: allele variation and mapping. Plant Mol Biol 27: 835-845.
6. Benham J, Jeung J, Jasieniuk M et al. (1999) Genographer: a graphical tool for automated fluorescent AFLP and microsatellite analysis (online). J Agric Genomics, vol 4. http://www. ncgr. org/ag/research/jag.
7. Bhatty RS (1993) Nonmalting uses of barley. In: MacGregor A, Bahatty RS (eds) Barley: chemistry and technology. AACC. St. Paul, MN, pp 355-417.
8. Bhatty RS, Berdahl JD, Christison GI (1975) Chemical composition and digestible energy of barley. Can J Anim Sci 55: 759-764.
9. Black JK (2001) Quality feed grains-research highlights and opportunities. In: Proceedings of the 10th Australian barley technical symposium, http://www. regional. org. au/au/abts/2001/m3/black. htm#TopOfPage.
10. Blake TK, Ullrich SE, Nilan RA (1982) Purification and characterization of barley D-hordein. Cereal Chem 61: 120-123.
11. Blake TK, Kadyrzhanova D, Shepard KW et al (1996) STS-PCR markers appropriate for wheat-barley introgression. Theor Appl Genet 93: 826-832.
12. Blake T, Bowman JCP, Hensleigh P et al (2002) Registration of Valier barley. Crop Sci 42: 1748-1749.
13. Boss DL, Bowman JGP (1996) Barley varieties for finishing steers: I. Feedlot performance, in vivo diet digestion, and carcass characteristics. J Anim Sci 74: 1967-1972.
14. Bowman J, Sowell B (2002) Feeding the beef cow herd. In: Kellems RO, Church DC (eds) Livestock Feeds and Feeding, 5th edn. Prentice Hall, Upper Saddle River, pp 341-360.
15. Bowman JCP, Blake TK, Surber LMM et al (2001) Feed quality variation in the barley core collection of the USDA national small grains collection. Crop Sci 41: 863-870.
16. Brennan CS, Narris N, Smith D, Shewry PR (1996) Structural differences in the mature endosperms of good and poor malting barley cultivars. J Cereal Sci 24: 171-177.
17. Broderick GA, Wallace RJ, Ørskov ER (1991) Control of rate and extent of protein degradation. In: Tsuda T, Sasaki Y, Kawashima R (eds) Physiological aspects of digestion and metabolism in ruminants. Academic Press, London, p 541.
18. Cecava MJ (1995) Protein requirements of beef cattle. In: Perry TW, Cecava MJ (eds) Beef cattle feeding and nutrition, 2nd edn. Academic press, New York, pp 53-67.
19. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
20. Day AD, Dickson AD (1957) Association between nitrogen percentage and certain morphological characteristics in barley. Agron J 49: 244-245.
21. Dellaporta SL, Wood J, Hicks JB (1983) A rapid method for DNA extraction from plant tissue. Plant Mol Biol 1: 19-21.
22. Engstrom DF, Mathison GW, Goonewardene LA (1992) Effect of β-glucan, starch, and fiber content and steam vs. dry rolling of barley grain on its degradability and utilization by steers. Anim Feed Sci Technol 37: 33-46.
23. Fedak G, Tsuchiya T, Helgason SB (1972) Use of monotelotrisomics for linkage mapping in barley. Can J Genet Cytol 14: 949-957.
24. Fox GP, Bowman JP, Kelly A et al (2008) Assessing for genetic and environmental effects on ruminant feed quality in barley (Hordeum vulgare). Euphytica 163: 249-257.
25. Franckowiak J (1997) Revised linkage maps for morphological markers in barley (Hordeum vulgare). Barley Genet. Newsletter 26: 9-21.
26. Frègeau-Reid J, Choo TM, Ho K-M (2001) Comparisons of two-row and six-row barley for chemical composition using doubled-haploid lines. Crop Sci 41: 1737-1743.
27. Han F, Ullrich SE, Romagosa I (2003) Quantitative genetic analysis of acid detergent fiber content in barley grain. J Cereal Sci 38: 167-172.
28. Hayes PM, Liu BH, Knapp SJ et al (1993) Quantitative trait locus effects and environmental interaction in a sample of North American barley germplasm. Theor Appl Genet 87: 392-401.
29. Hayes PM, Cerono J, Witsenboer H (1997) Characterization and exploiting genetic diversity and quantitative traits in barley (Hordeum vulgare) using AFLP markers (online). Available at http://www. ncgr. org/.
30. Heun M (1992) Mapping quantitative powdery mildew resistance of barley using a resitraction fragmeny length polymorphism map. Genome 35: 1019-1025.
31. Hockett EA, Standridge NN (1976) Relationship of agronomic and malt characteristics of isogenic Traill to breeding two- and six-rowed barley. In: Gaul H (ed) Barley genetics III, Proceedings of the third International Barley Genetic Symposium Garching, 1975. Veralg Karl Thiemig, Munich, pp 594-603.
32. Holland JB, Nyquist WE, Cervantes-Martinez CT (2003) Estimating and interpreting heritability for plant breeding: an update. Plant Breed Rev 22: 9-111.
33. Hunt CW (1996) Factors affecting feeding quality of barley for ruminants. Anim Feed Sci Technol 62: 37-48.
34. Institute SAS (1990) SAS user's guide: statistics. SAS Inst. Cary, NC.
35. Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136: 1447-1455.
36. Jui PY, Choo TM, Ho KM (1997) Genetic analysis of a two-row × six-row cross of barley using doubled haploid. Theor Appl Genet 94: 549-556.
37. Kao C-H, Zeng ZB, Teasdale RD (1999) Multiple interval mapping for quantitative trait loci. Genetics 152: 1203-1216.
38. Kellems RO, Church DC (2002) The gastrointestinal tract and nutrient utilization. In: Kellems RO, Church DC (eds) Livestock feeds and feeding, 5th edn. Prentice Hall, New Jersey, pp 6-15.
39. Kjaer B, Jensen J (1996) Quantitative trait loci for grain yield and yield components in a cross between a six-rowed and a two-rowed barley. Euphytica 90: 39-48.
40. Kleinhofs A, Kilian A, Saghai Maroof MA et al (1993) A molecular, isozymes, and morphological map of the barley (Hordeum vulgare) genome. Theor Appl Genet 86: 705-712.
41. Kong D, Choo TM, Jui P et al (1995) Variation in starch, protein, and fiber of Canadian barely cultivars. Can J Plant Sci 75: 865-870.
42. Kotarski SF, Waniska RD, Thurn KK (1992) Starch hydrolysis by the animal microflora. J Nutr 122: 178-190.
43. Kunzel G, Korzun L, Meister A (2000) Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints. Genetics 154: 397-412.
44. Larson SR, Kadyrzhanova D, McDonald C et al (1996) Evaluation of barley chromosome-3 yield QTL in a backcross F2 population using STS-PCR. Theor Appl Genet 93: 618-625.
45. Lehman KB, Okine EK, Mathison GW, Helm J (1995) In situ degradabilities of barley grain cultivars. Can J Anim Sci 75: 485-487.
46. Liu Z-W, Biyashev RM, Saghai Maroof MA (1996) Development of simple sequence repeat DNA markers and their integration into a barley linkage map. Theor Appl Genet 93: 869-876.
47. Marquez-Cedillo LA, Hayes PM, Jones BL et al (2000) QTL analysis of malting quality in barley based on the doubled-haploid progeny of two elite North American varieties representing different germplasm groups. Theor Appl Genet 101: 173-184.
48. Martin JM, Blake TK, Hockett EA (1991) Diversity among American spring barley cultivars based on coefficients of parentage. Crop Sci 31: 1131-1137.
49. Mather DE, Tinker NA, LaBerge DE et al (1997) Regions of the genome that affect grain and malt quality in a North American two-row barley cross. Crop Sci 37: 544-554.
50. McAllister TA, Phillippe RC, Rode LM et al (1993) Effect of protein matrix on the digestion of cereal grains by ruminal microorganisms. J Anim Sci 71: 205-212.
51. McCleary BV, Solah V, Gibson TS (1994) Quantitative measurement of total starch in cereal flours and products. J Cereal Sci 20: 51-58.
52. McDonald P, Edwards RA, Greenhalgh JFD et al (1995) Animal nutrition, 5th edn. Longman scientific and technical, New York.
53. McGuire CF, Hockett EA (1983) Relationship of V, i and L alleles with malting quality of Bonneville barley. Field Crops Res 7: 51-60.
54. Mesfin A, Smith KP, Dill-Macky R et al (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population. Crop Sci 43: 307-318.
55. Molina-Cano JL, Francwsch M, Perez-Vendrell AM (1997) Genetic and environmental variation in malting and feed quality of barley. J Cereal Sci 25: 37-47.
56. Narasimhalu PD, Kong TM, Choo T (1995) Effects of environment and cultivar on total mixed-linkage ß-glucan content in eastern and western Canadian barleys (Hordeum vulgare L.). Can J Plant Sci 75: 371-376.
57. Nyquist WE (1991) Estimation of heritability and prediction of selection response in plant populations. Crit Rev Plant Sci 10: 235-322.
58. Ovenell-Roy KH, Nelson ML, Froseth JA (1998) Variation in chemical composition and nutritional quality among barley cultivars for ruminants: 1. Steer finishing performance, diet degradabilities and carcass characteristics. Can J Anim Sci 78: 369-375.
59. Oziel A, Hayes PM, Chen FQ (1996) Application of quantitative trait locus mapping to the development of winter-habit malting barley. Plant Breed 115: 43-51.
60. Pecchioni N, Vale G, Toubia-Rahme H (1999) Barley-Pyrenophora graminea interaction: QTL analysis and gene mapping. Plant Breed 118: 29-35.
61. Perry TW, Cullison AE, Lowrey RS (1999) Feeds and feeding, 5th edn. Prentice Hall, New Jersey.
62. Ramsay L, Macaulay M, Ivanissevich S et al (2000) A simple sequence repeat-based linkage map of barley. Genetics 156: 1997-2005.
63. RC N (1995) Nutrient requirements of laboratory animals (revised), 4th edn. National Academy Press, Washington.
64. Russell JB, Onodera R, Hino T (1991) Ruminal protein fermentation: new perspectives on previous contradictions. In: Tsuda T, Sasaki Y, Kawashima R (eds) Physiological aspects of digestion and metabolism in ruminants. Academic Press, London, p 681.
65. Sayed-Tabatabaei BE, Mano Y, Takaiwa F et al (1999) Sequence-tagged sites for barley genome mapping. Bull Natl Inst Agrobiol Resour 13: 11-22.
66. See D, Kanazin V, Kephart K, Blake T (2002) Mapping genes controlling variation in barley grain protein concentration. Crop Sci 42: 680-685.
67. Steel RG, Torrie JH (1980) Principles and procedures of statistics: a biometrical approach, 2nd edn. McGraw-Hill collage, New York.
68. Surber LMM, Bowman JGP, Blake TK et al (2000) Prediction of barley feed quality for beef cattle from laboratory analyses. Proc West Sec Am Soc Anim Sci 51: 295-298.
69. Taketa S, Amano S, Tsujino Y et al (2008) Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway. PNAS 105: 4062-4067.
70. Ullrich SE, Han F, Froseth JA (1996) Mapping of loci that affect carbohydrate content in barley grain. In: Slinkard A, Scoles G, Rossnagel B (Eds.). Proceedings of the V Int'l Oat Conf & VII Int'l Barley Genetic Symposium Poster Ses. vol 1, University of Saskatchewan Extension Press, Saskatoon, Canada, pp 141-143.
71. van Ooijen JW, Voorrips RE (2001) JoinMap® 3. 0. Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands.
72. van Soest PJ, Robertson JB, Lewis BA (1991) Methods for dietary fiber, neutral detergent fiber, and nonstarch polysaccharides in relation to animal nutrition. J Dairy Sci 74: 3583-3597.
73. Vos P, Hogers R, Bleeker M et al (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
74. Wang SC, Basten J, Zeng Z-B (2007) Windows QTL Cartographer 2. 5. Department of Statistics, North Carolina State University, Raleigh, NC http://statgen. ncsu. edu/qtlcart/WQTLCart. htm.
75. Yang WZ, Beauchemin KA, Farr BI et al (1997) Comparison of barley, hull-less barley, and corn in the concentrate of dairy cows. J Dairy Sci 80: 2885-2895.
76. Yanke LJ, Dong Y, McAllister TA (1993) Comparison of amylolytic and proteolytic activities of ruminal fungi grown on cereal grains. Can J Microbiol 39: 817-820.
77. Zeng Z-B (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
78. Zinn RA, Montano M, Shen Y (1996) Comparative feeding value of hull-less vs. covered barley for feedlot cattle. J Anim Sci 74: 1187-1193.