Bacterial protein acetylation: The dawning of a new age

Molecular Microbiology

Volumn 77, Issue 1, 2010, Pages 15-21

  Linda I , Hu ^a   Bruno P , Lima ^a   Alan J , Wolfe ^a  

^a LOYOLA UNIVERSITY CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN;

ACETYLATION; EUKARYOTE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN MODIFICATION; PROTEIN STRUCTURE; REVIEW; BACTERIA; METABOLISM; PROTEIN PROCESSING;

BACTERIA (MICROORGANISMS); EUKARYOTA;

ACETYLATION; BACTERIA; BACTERIAL PROTEINS; EUKARYOTA; PROTEIN PROCESSING, POST-TRANSLATIONAL;

EID: 77954013335     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2010.07204.x     Document Type: Review

References (67)

1. Allfrey, V.G., Faulkner, R. Mirsky, A.E. (1964) Acetylation and methylation of histones and their possible role in the regulation of Rna synthesis. Proc Natl Acad Sci USA 51 : 786 794.
2. Allis, C.D., Berger, S.L., Cote, J., Dent, S., Jenuwien, T., Kouzarides, T., et al. (2007) New nomenclature for chromatin-modifying enzymes. Cell 131 : 633 636.
3. Barak, R. Eisenbach, M. (2001) Acetylation of the response regulator, CheY, is involved in bacterial chemotaxis. Mol Microbiol 40 : 731 743.
4. Barak, R., Welch, M., Yanovsky, A., Oosawa, K. Eisenbach, M. (1992) Acetyladenylate or its derivative acetylates the chemotaxis protein CheY in vitro and increases its activity at the flagellar switch. Biochemistry 31 : 10099 10107.
5. Barak, R., Prasad, K., Shainskaya, A., Wolfe, A.J. Eisenbach, M. (2004) Acetylation of the chemotaxis response regulator CheY by acetyl-CoA synthetase purified from Escherichia coli. J Mol Biol 342 : 383 401. (Pubitemid 39157339)
6. Barak, R., Yan, J., Shainskaya, A. Eisenbach, M. (2006) The chemotaxis response regulator CheY can catalyze its own acetylation. J Mol Biol 359 : 251 265.
7. Berndsen, C.E., Albaugh, B.N., Tan, S. Denu, J.M. (2007) Catalytic mechanism of a MYST family histone acetyltransferase. Biochemistry 46 : 623 629.
8. Blander, G. Guarente, L. (2004) The Sir2 family of protein deacetylases. Annu Rev Biochem 73 : 417 435.
9. Buck, S.W., Gallo, C.M. Smith, J.S. (2004) Diversity in the Sir2 family of protein deacetylases. J Leukoc Biol 75 : 939 950.
10. Chen, Y., Sprung, R., Tang, Y., Ball, H., Sangras, B., Kim, S.C., et al. (2007) Lysine propionylation and butyrylation are novel post-translational modifications in histones. Mol Cell Proteomics 6 : 812 819.
11. Cheng, Z., Tang, Y., Chen, Y., Kim, S., Liu, H., Li, S.S., et al. (2009) Molecular characterization of propionyllysines in non-histone proteins. Mol Cell Proteomics 8 : 45 52.
12. Choudhary, C., Kumar, C., Gnad, F., Nielsen, M.L., Rehman, M., Walther, T.C., et al. (2009) Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science 325 : 834 840.
13. Davies, J. Wright, G.D. (1997) Bacterial resistance to aminoglycoside antibiotics. Trends Microbiol 5 : 234 240.
14. Denu, J.M. (2005) The Sir 2 family of protein deacetylases. Curr Opin Chem Biol 9 : 431 440.
15. Dyda, F., Klein, D.C. Hickman, A.B. (2000) GCN5-related N-acetyltransferases: a structural overview. Annu Rev Biophys Biomol Struct 29 : 81 103.
16. Eisenbach, M. (2007) A hitchhiker's guide through advances and conceptual changes in chemotaxis. J Cell Physiol 213 : 574 580.
17. Gardner, J.G. Escalante-Semerena, J.C. (2009) In Bacillus subtilis, the sirtuin protein deacetylase, encoded by the srtN gene (formerly yhdZ), and functions encoded by the acuABC genes control the activity of acetyl coenzyme A synthetase. J Bacteriol 191 : 1749 1755.
18. Gardner, J.G., Grundy, F.J., Henkin, T.M. Escalante-Semerena, J.C. (2006) Control of acetyl-coenzyme A synthetase (AcsA) activity by acetylation/ deacetylation without NAD(+) involvement in Bacillus subtilis. J Bacteriol 188 : 5460 5468.
19. Garrity, J., Gardner, J.G., Hawse, W., Wolberger, C. Escalante-Semerena, J.C. (2007) N-lysine propionylation controls the activity of propionyl-CoA synthetase. J Biol Chem 282 : 30239 30245.
20. Glozak, M.A., Sengupta, N., Zhang, X. Seto, E. (2005) Acetylation and deacetylation of non-histone proteins. Gene 363 : 15 23.
21. Gray, M.W., Burger, G. Lang, B.F. (1999) Mitochondrial evolution. Science 283 : 1476 1481.
22. Gregoretti, I.V., Lee, Y.M. Goodson, H.V. (2004) Molecular evolution of the histone deacetylase family: functional implications of phylogenetic analysis. J Mol Biol 338 : 17 31.
23. Hildmann, C., Ninkovic, M., Dietrich, R., Wegener, D., Riester, D., Zimmermann, T., et al. (2004) A new amidohydrolase from Bordetella or Alcaligenes strain FB188 with similarities to histone deacetylases. J Bacteriol 186 : 2328 2339.
24. Hildmann, C., Riester, D. Schwienhorst, A. (2007) Histone deacetylases - an important class of cellular regulators with a variety of functions. Appl Microbiol Biotechnol 75 : 487 497.
25. Hwang, C.S., Shemorry, A. Varshavsky, A. (2010) N-terminal acetylation of cellular proteins creates specific degradation signals. Science 327 : 973 977.
26. Kim, S.C., Sprung, R., Chen, Y., Xu, Y., Ball, H., Pei, J., et al. (2006) Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. Mol Cell 23 : 607 618.
27. Kouzarides, T. (2000) Acetylation: a regulatory modification to rival phosphorylation? EMBO J 19 : 1176 1179.
28. Ladurner, A.G. (2009) Chromatin places metabolism center stage. Cell 138 : 18 20.
29. Leemhuis, H., Packman, L.C., Nightingale, K.P. Hollfelder, F. (2008) The human histone acetyltransferase P/CAF is a promiscuous histone propionyltransferase. Chembiochem 9 : 499 503.
30. Li, R., Gu, J., Chen, Y., Xiao, C., Wang, L., Zhang, Z., et al. (2010) CobB regulates Escherichia coli chemotaxis by deacetylating the response regulator CheY. Mol Microbiol 76 : 1162 1174.
31. Liarzi, O., Barak, R., Bronner, V., Dines, M., Sagi, Y., Shainskaya, A. Eisenbach, M. (2010) Acetylation represses the binding of CheY to its target proteins. Mol Microbiol 76 : 932 943.
32. Liu B., Lin, Y., Darwanto, A., Song, X., Xu, G. Zhang, K. (2009) Identification and characterization of propionylation at histone H3 lysine 23 in mammalian cells. J Biol Chem 284 : 32288 32295.
33. Marmorstein, R. Roth, S.Y. (2001) Histone acetyltransferases: function, structure, and catalysis. Curr Opin Genet Dev 11 : 155 161.
34. Phillips, D.M. (1963) The presence of acetyl groups of histones. Biochem J 87 : 258 263.
35. Polevoda, B. Sherman, F. (2002) The diversity of acetylated proteins. Genome Biol 3 : reviews0006.
36. Polevoda, B. Sherman, F. (2003) N-terminal acetyltransferases and sequence requirements for N-terminal acetylation of eukaryotic proteins. J Mol Biol 325 : 595 622.
37. Rathmell, J.C. Newgard, C.B. (2009) Biochemistry. A glucose-to-gene link. Science 324 : 1021 1022.
38. Schwer, B. Verdin, E. (2008) Conserved metabolic regulatory functions of sirtuins. Cell Metab 7 : 104 112.
39. Schwer, B., Bunkenborg, J., Verdin, R.O., Andersen, J.S. Verdin, E. (2006) Reversible lysine acetylation controls the activity of the mitochondrial enzyme acetyl-CoA synthetase 2. Proc Natl Acad Sci USA 103 : 10224 10229.
40. Shaw, K.J., Rather, P.N., Hare, R.S. Miller, G.H. (1993) Molecular genetics of aminoglycoside resistance genes and familial relationships of the aminoglycoside-modifying enzymes. Microbiol Rev 57 : 138 163.
41. Smith, B.C. Denu, J.M. (2007) Acetyl-lysine analog peptides as mechanistic probes of protein deacetylases. J Biol Chem 282 : 37256 37265.
42. Starai, V.J. Escalante-Semerena, J.C. (2004) Identification of the protein acetyltransferase (Pat) enzyme that acetylates acetyl-CoA synthetase in Salmonella enterica. J Mol Biol 340 : 1005 1012.
43. Starai, V.J., Celic, I., Cole, R.N., Boeke, J.D. Escalante-Semerena, J.C. (2002) Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine. Science 298 : 2390 2392.
44. Starai, V.J., Takahashi, H., Boeke, J.D. Escalante-Semerena, J.C. (2003) Short-chain fatty acid activation by acyl-coenzyme A synthetases requires SIR2 protein function in Salmonella enterica and Saccharomyces cerevisiae. Genetics 163 : 545 555.
45. Starai, V.J., Takahashi, H., Boeke, J.D. Escalante-Semerena, J.C. (2004) A link between transcription and intermediary metabolism: a role for Sir2 in the control of acetyl-coenzyme A synthetase. Curr Opin Microbiol 7 : 115 119.
46. Sterner, D.E. Berger, S.L. (2000) Acetylation of histones and transcription-related factors. Microbiol Mol Biol Rev 64 : 435 459.
47. Takahashi, H., McCaffery, J.M., Irizarry, R.A. Boeke, J.D. (2006) Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription. Mol Cell 23 : 207 217.
48. Tanaka, S., Matsushita, Y., Yoshikawa, A. Isono, K. (1989) Cloning and molecular characterization of the gene rimL which encodes an enzyme acetylating ribosomal protein L12 of Escherichia coli K12. Mol Gen Genet 217 : 289 293.
49. Thompson, P.R., Wang, D., Wang, L., Fulco, M., Pediconi, N., Zhang, D., et al. (2004) Regulation of the p300 HAT domain via a novel activation loop. Nat Struct Mol Biol 11 : 308 315.
50. Vetting, M.W., S de Carvalho, L.P., Yu, M., Hegde, S.S., Magnet, S., Roderick, S.L. Blanchard, J.S. (2005) Structure and functions of the GNAT superfamily of acetyltransferases. Arch Biochem Biophys 433 : 212 226.
51. Vladimirov, N. Sourjik, V. (2009) Chemotaxis: how bacteria use memory. Biol Chem 390 : 1097 1104.
52. Walsh, C. (2006) Posttranslational Modification of Proteins: Expanding Nature's Inventory.
53. Wang, J. Chen, J. (2010) SIRT1 regulates autoacetylation and histone acetyltransferase activity of TIP60. J Biol Chem 285 : 11458 11464.
54. Wang, Q., Zhang, Y., Yang, C., Xiong, H., Lin, Y., Yao, J., et al. (2010) Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux. Science 327 : 1004 1007.
55. Wellen, K.E., Hatzivassiliou, G., Sachdeva, U.M., Bui, T.V., Cross, J.R. Thompson, C.B. (2009) ATP-citrate lyase links cellular metabolism to histone acetylation. Science 324 : 1076 1080.
56. Witze, E.S., Old, W.M., Resing, K.A. Ahn, N.G. (2007) Mapping protein post-translational modifications with mass spectrometry. Nat Methods 4 : 798 806.
57. Wolfe, A.J. (2005) The acetate switch. Microbiol Mol Biol Rev 69 : 12 50.
58. Wolfe, A.J. (2008) Quorum sensing 'flips' the acetate switch. J Bacteriol 190 : 5735 5737.
59. Yan, J., Barak, R., Liarzi, O., Shainskaya, A. Eisenbach, M. (2008) In vivo acetylation of CheY, a response regulator in chemotaxis of Escherichia coli. J Mol Biol 376 : 1260 1271.
60. Yang, X.J. (2004) The diverse superfamily of lysine acetyltransferases and their roles in leukemia and other diseases. Nucleic Acids Res 32 : 959 976.
61. Yang, X.J. Seto, E. (2008a) Lysine acetylation: codified crosstalk with other posttranslational modifications. Mol Cell 31 : 449 461.
62. Yang, X.J. Seto, E. (2008b) The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men. Nat Rev Mol Cell Biol 9 : 206 218.
63. Yoshikawa, A., Isono, S., Sheback, A. Isono, K. (1987) Cloning and nucleotide sequencing of the genes rimI and rimJ which encode enzymes acetylating ribosomal proteins S18 and S5 of Escherichia coli K12. Mol Gen Genet 209 : 481 488.
64. Yu, J. Auwerx, J. (2009) The role of sirtuins in the control of metabolic homeostasis. Ann N Y Acad Sci 1173 (Suppl. 1 E10 E19.
65. Yu, B.J., Kim, J.A., Moon, J.H., Ryu, S.E. Pan, J.G. (2008) The diversity of lysine-acetylated proteins in Escherichia coli. J Microbiol Biotechnol 18 : 1529 1536.
66. Zhang, J., Sprung, R., Pei, J., Tan, X., Kim, S., Zhu, H., et al. (2009) Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli. Mol Cell Proteomics 8 : 215 225.
67. Zhao, S., Xu, W., Jiang, W., Yu, W., Lin, Y., Zhang, T., et al. (2010) Regulation of cellular metabolism by protein lysine acetylation. Science 327 : 1000 1004.