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Volumn 48, Issue 2, 2010, Pages 139-144

A new technique for obtaining whole pathogen transcriptomes from infected host tissues

Author keywords

Coincidence cloning; Intracellular pathogen transcriptome; Mycobacterium tuberculosis

Indexed keywords

BACTERIAL DNA; COMPLEMENTARY DNA; GENOMIC DNA; RNA; TRANSCRIPTOME; BACTERIAL RNA;

EID: 77953988966     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/000113350     Document Type: Article
Times cited : (17)

References (28)
  • 2
    • 15844428981 scopus 로고    scopus 로고
    • Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries
    • Diatchenko, L., Y.F. Lau, A.P. Campbell, A. Chenchik, F. Moqadam, B. Huang, S. Lukyanov, K. Lukyanov, et al. 1996. Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. USA 93:6025-6030.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 6025-6030
    • Diatchenko, L.1    Lau, Y.F.2    Campbell, A.P.3    Chenchik, A.4    Moqadam, F.5    Huang, B.6    Lukyanov, S.7    Lukyanov, K.8
  • 3
    • 0035163351 scopus 로고    scopus 로고
    • Microarray analysis of pathogens and their interaction with hosts
    • Kato-Maeda, M., Q. Gao, and P.M. Small. 2001. Microarray analysis of pathogens and their interaction with hosts. Cell. Microbiol. 3:713-719.
    • (2001) Cell. Microbiol. , vol.3 , pp. 713-719
    • Kato-Maeda, M.1    Gao, Q.2    Small, P.M.3
  • 4
    • 0036165258 scopus 로고    scopus 로고
    • Functional and comparative genomics of pathogenic bacteria
    • Schoolnik, G.K. 2002. Functional and comparative genomics of pathogenic bacteria. Curr. Opin. Microbiol. 5:20-26.
    • (2002) Curr. Opin. Microbiol. , vol.5 , pp. 20-26
    • Schoolnik, G.K.1
  • 5
    • 35448940164 scopus 로고    scopus 로고
    • Gene expression during host-pathogen interactions: Approaches to bacterial mRNA extraction and labelling for microarray analysis
    • B.W. Wren and N. Dorrel (Eds.), Academic Press, London
    • Mangan, A., I. Monahan, and P. Butcher. 2002. Gene expression during host-pathogen interactions: approaches to bacterial mRNA extraction and labelling for microarray analysis, p. 137-151. In B.W. Wren and N. Dorrel (Eds.), Methods in Microbiology. Vol. 33. Academic Press, London.
    • (2002) Methods in Microbiology , vol.33 , pp. 137-151
    • Mangan, A.1    Monahan, I.2    Butcher, P.3
  • 7
    • 0043142536 scopus 로고    scopus 로고
    • Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: Insights into the phagosomal environment
    • Schnappinger, D., S. Ehrt, M.I. Voskuil, Y. Liu, J.A. Mangan, I.M. Monahan, G. Dolganov, B. Efron, et al. 2003. Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: insights into the phagosomal environment. J. Exp. Med. 198:693-704.
    • (2003) J. Exp. Med. , vol.198 , pp. 693-704
    • Schnappinger, D.1    Ehrt, S.2    Voskuil, M.I.3    Liu, Y.4    Mangan, J.A.5    Monahan, I.M.6    Dolganov, G.7    Efron, B.8
  • 8
    • 0034865497 scopus 로고    scopus 로고
    • CDNA-RNA subtractive hybridization reveals increased expression of mycocerosic acid synthase in intracellular Mycobacterium bovis BCG
    • Li, M.S., I.M. Monahan, S.J. Waddell, J.A. Mangan, S.L. Martin, M.J. Everett, and P.D. Butcher. 2001. cDNA-RNA subtractive hybridization reveals increased expression of mycocerosic acid synthase in intracellular Mycobacterium bovis BCG. Microbiology 147:2293-2305. (Pubitemid 32785509)
    • (2001) Microbiology , vol.147 , Issue.8 , pp. 2293-2305
    • Li, M.-S.1    Monahan, I.M.2    Waddell, S.J.3    Mangan, J.A.4    Martin, S.L.5    Everett, M.J.6    Butcher, P.D.7
  • 9
    • 0032573095 scopus 로고    scopus 로고
    • Identification of differentially expressed mRNA in prokaryotic organisms by customized amplification libraries (DECAL): The effect of isoniazid on gene expression in Mycobacterium tuberculosis
    • Alland, D., I. Kramnik, T.R. Weisbrod, L. Otsubo, R. Cerny, L.P. Miller, W.R. Jacobs, Jr., and B.R. Bloom. 1998. Identification of differentially expressed mRNA in prokaryotic organisms by customized amplification libraries (DECAL): the effect of isoniazid on gene expression in Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. USA 95:13227-13232.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 13227-13232
    • Alland, D.1    Kramnik, I.2    Weisbrod, T.R.3    Otsubo, L.4    Cerny, R.5    Miller, L.P.6    Jacobs Jr., W.R.7    Bloom, B.R.8
  • 10
    • 0033613213 scopus 로고    scopus 로고
    • Identification of Mycobacterium tuberculosis RNAs synthesized in response to phagocytosis by human macrophages by selective capture of transcribed sequences (SCOTS)
    • Graham, J.E. and J.E. Clark-Curtiss. 1999. Identification of Mycobacterium tuberculosis RNAs synthesized in response to phagocytosis by human macrophages by selective capture of transcribed sequences (SCOTS). Proc. Natl. Acad. Sci. USA 96:11554-11559.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 11554-11559
    • Graham, J.E.1    Clark-Curtiss, J.E.2
  • 11
    • 0034044318 scopus 로고    scopus 로고
    • Genome-directed primers for selective labeling of bacterial transcripts for DNA microarray analysis
    • Talaat, A.M., P. Hunter, and S.A. Johnston. 2000. Genome-directed primers for selective labeling of bacterial transcripts for DNA microarray analysis. Nat. Biotechnol. 18:679-682.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 679-682
    • Talaat, A.M.1    Hunter, P.2    Johnston, S.A.3
  • 13
    • 41549143589 scopus 로고    scopus 로고
    • Microarray analysis of defined Mycobacterium tuberculosis populations using RNA amplification strategies
    • Waddell, S.J., K. Laing, C. Senner, and P.D. Butcher. 2008. Microarray analysis of defined Mycobacterium tuberculosis populations using RNA amplification strategies. BMC Genomics 9:94.
    • (2008) BMC Genomics , vol.9 , pp. 94
    • Waddell, S.J.1    Laing, K.2    Senner, C.3    Butcher, P.D.4
  • 14
    • 0034799370 scopus 로고    scopus 로고
    • Whole genome plasticity in pathogenic bacteria
    • Dobrindt, U. and J. Hacker. 2001. Whole genome plasticity in pathogenic bacteria. Curr. Opin. Microbiol. 4:550-557.
    • (2001) Curr. Opin. Microbiol. , vol.4 , pp. 550-557
    • Dobrindt, U.1    Hacker, J.2
  • 15
    • 0036790007 scopus 로고    scopus 로고
    • Microbial genome evolution: Sources of variability
    • Mira, A., L. Klasson, and S.G. Andersson. 2002. Microbial genome evolution: sources of variability. Curr. Opin. Microbiol. 5:506-512.
    • (2002) Curr. Opin. Microbiol. , vol.5 , pp. 506-512
    • Mira, A.1    Klasson, L.2    Andersson, S.G.3
  • 16
    • 1542344844 scopus 로고    scopus 로고
    • Non-methylated genomic sites coinci dence cloning (NGSCC): An approach to large scale analysis of hypomethylated CpG patterns at predetermined genomic loci
    • Azhikina, T., I. Gainetdinov, Y. Skvortsova, A. Batrak, N. Dmitrieva, and E. Sverdlov. 2004. Non-methylated genomic sites coinci dence cloning (NGSCC): an approach to large scale analysis of hypomethylated CpG patterns at predetermined genomic loci. Mol. Genet. Genomics 271:22-32.
    • (2004) Mol. Genet. Genomics , vol.271 , pp. 22-32
    • Azhikina, T.1    Gainetdinov, I.2    Skvortsova, Y.3    Batrak, A.4    Dmitrieva, N.5    Sverdlov, E.6
  • 17
    • 0034034789 scopus 로고    scopus 로고
    • Comparative analysis of mycobacterial infections in susceptible I/St and resistant A/Sn inbred mice
    • Nikonenko, B.V., M.M. Averbakh, Jr., C. Lavebratt, E. Schurr, and A.S. Apt. 2000. Comparative analysis of mycobacterial infections in susceptible I/St and resistant A/Sn inbred mice. Tuber. Lung Dis. 80:15-25.
    • (2000) Tuber. Lung Dis. , vol.80 , pp. 15-25
    • Nikonenko, B.V.1    Averbakh Jr., M.M.2    Lavebratt, C.3    Schurr, E.4    Apt, A.S.5
  • 20
    • 33750439838 scopus 로고    scopus 로고
    • Regulation of Mycobacterium tuberculosis whiB3 in the mouse lung and macrophages
    • Banaiee, N., W.R. Jacobs, Jr., and J.D. Ernst. 2006. Regulation of Mycobacterium tuberculosis whiB3 in the mouse lung and macrophages. Infect. Immun. 74:6449-6457.
    • (2006) Infect. Immun. , vol.74 , pp. 6449-6457
    • Banaiee, N.1    Jacobs Jr., W.R.2    Ernst, J.D.3
  • 21
    • 34249821632 scopus 로고    scopus 로고
    • Mycobacterial bacilli are metabolically active during chronic tuberculosis in murine lungs: Insights from genome-wide transcriptional profiling
    • Talaat, A.M., S.K. Ward, C.W. Wu, E. Rondon, C. Tavano, J.P. Bannantine, R. Lyons, and S.A. Johnston. 2007. Mycobacterial bacilli are metabolically active during chronic tuberculosis in murine lungs: insights from genome-wide transcriptional profiling. J. Bacteriol. 189:4265-4274.
    • (2007) J. Bacteriol. , vol.189 , pp. 4265-4274
    • Talaat, A.M.1    Ward, S.K.2    Wu, C.W.3    Rondon, E.4    Tavano, C.5    Bannantine, J.P.6    Lyons, R.7    Johnston, S.A.8
  • 22
    • 39449089394 scopus 로고    scopus 로고
    • Parallel tagged sequencing on the 454 platform
    • Meyer, M., U. Stenzel, and M. Hofreiter. 2008. Parallel tagged sequencing on the 454 platform. Nat. Protoc. 3:267-278.
    • (2008) Nat. Protoc. , vol.3 , pp. 267-278
    • Meyer, M.1    Stenzel, U.2    Hofreiter, M.3
  • 23
    • 46249130709 scopus 로고    scopus 로고
    • The beginning of the end for microarrays?
    • Shendure, J. 2008. The beginning of the end for microarrays? Nat. Methods 5:585-587.
    • (2008) Nat. Methods , vol.5 , pp. 585-587
    • Shendure, J.1
  • 24
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure, J. and H. Ji. 2008. Next-generation DNA sequencing. Nat. Biotechnol. 26:1135-1145.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 25
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • Wang, Z., M. Gerstein, and M. Snyder. 2009. RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10:57-63.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 27
    • 33646934132 scopus 로고    scopus 로고
    • GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats
    • DOI 10.1093/nar/gkl335
    • Buzdin, A., E. Kovalskaya-Alexandrova, E. Gogvadze, and E. Sverdlov. 2006. GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats. Nucleic Acids Res. 34:e67. (Pubitemid 43985648)
    • (2006) Nucleic Acids Research , vol.34 , Issue.9
    • Buzdin, A.1    Kovalskaya-Alexandrova, E.2    Gogvadze, E.3    Sverdlov, E.4
  • 28
    • 41949097208 scopus 로고    scopus 로고
    • Nitrate enhances the survival of Mycobacterium tuberculosis during inhibition of respiration
    • Sohaskey, C.D. 2008. Nitrate enhances the survival of Mycobacterium tuberculosis during inhibition of respiration. J. Bacteriol. 190:2981-2986.
    • (2008) J. Bacteriol. , vol.190 , pp. 2981-2986
    • Sohaskey, C.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.