메뉴 건너뛰기




Volumn 11, Issue 4, 2010, Pages 1467-1477

Genetic composition, population structure and phylogeography of the loggerhead sea turtle: Colonization hypothesis for the Brazilian rookeries

Author keywords

Caretta caretta; Conservation genetics; Mitochondrial DNA; Mixed stock analysis; Phylogeography; Population structure

Indexed keywords

BREEDING SITE; COAST; COLONIZATION; CONSERVATION GENETICS; ENDANGERED SPECIES; FORAGING BEHAVIOR; GENETIC STRUCTURE; HOMING BEHAVIOR; MIGRATORY BEHAVIOR; MITOCHONDRIAL DNA; NESTING; PHYLOGEOGRAPHY; POPULATION DISTRIBUTION; STOCK ASSESSMENT; TURTLE;

EID: 77953959876     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-009-9975-0     Document Type: Article
Times cited : (57)

References (56)
  • 1
    • 49949089120 scopus 로고    scopus 로고
    • New mtDNA D-loop primers which work for a variety of marine turtle species may increase the resolution of mixed stock analysis
    • In: Frick M, Panagopoulous A, Rees AF, Williams K (eds), International Sea Turtle Society, Athens, Greece. Available from
    • Abreu-Grobois FA, Horrocks J, Formia A, Dutton P, LeRoux R, Vélez Zuazo J, Soares L, Meylan A (2006) New mtDNA D-loop primers which work for a variety of marine turtle species may increase the resolution of mixed stock analysis. In: Frick M, Panagopoulous A, Rees AF, Williams K (eds) Proceedings of the 26th annual symposium on sea turtle biology and conservation. International Sea Turtle Society, Athens, Greece. Available from http://www.iucnmtsg.org/genetics/meth/primers/abreu_grobois_etal_new_dlo op_primers.pdf.
    • (2006) Proceedings of the 26th Annual Symposium on Sea Turtle Biology and Conservation
    • Abreu-Grobois, F.A.1    Horrocks, J.2    Formia, A.3    Dutton, P.4    LeRoux, R.5    Vélez, Z.J.6    Soares, L.7    Meylan, A.8
  • 3
    • 0026509138 scopus 로고
    • Mitochondrial DNA evolution at a turtle's pace: Evidence for low genetic variability and reduced microevolutionary rate in the Testudines
    • Avise JC, Bowen BW, Lamb T, Meylan AB, Bermingham E (1992) Mitochondrial DNA evolution at a turtle's pace: evidence for low genetic variability and reduced microevolutionary rate in the Testudines. Mol Biol Evol 9: 457-473.
    • (1992) Mol Biol Evol , vol.9 , pp. 457-473
    • Avise, J.C.1    Bowen, B.W.2    Lamb, T.3    Meylan, A.B.4    Bermingham, E.5
  • 4
    • 0020541784 scopus 로고
    • An approach to population and evolutionary genetic theory for genes in mitochondria and chloroplasts, and some results
    • Birky CW, Maruyama T, Fuerst P (1983) An approach to population and evolutionary genetic theory for genes in mitochondria and chloroplasts, and some results. Genetics 103: 513-527.
    • (1983) Genetics , vol.103 , pp. 513-527
    • Birky, C.W.1    Maruyama, T.2    Fuerst, P.3
  • 5
    • 42449134553 scopus 로고    scopus 로고
    • Annual variation in source contributions to a mixed stock: Implications for quantifying connectivity
    • Bjorndal KA, Bolten AB (2008) Annual variation in source contributions to a mixed stock: implications for quantifying connectivity. Mol Ecol 17: 2185-2193.
    • (2008) Mol Ecol , vol.17 , pp. 2185-2193
    • Bjorndal, K.A.1    Bolten, A.B.2
  • 6
    • 1442264855 scopus 로고    scopus 로고
    • Active swimmers-passive drifters: The oceanic juvenile stage of loggerheads in the Atlantic system
    • A. B. Bolten and B. E. Witherington (Eds.), Washington, DC: Smithsonian Institution Press
    • Bolten AB (2003) Active swimmers-passive drifters: the oceanic juvenile stage of loggerheads in the Atlantic system. In: Bolten AB, Witherington BE (eds) Loggerhead sea turtles. Smithsonian Institution Press, Washington, DC, pp 63-78.
    • (2003) Loggerhead Sea Turtles , pp. 63-78
    • Bolten, A.B.1
  • 8
    • 9644269518 scopus 로고    scopus 로고
    • What is a loggerhead turtle? The genetic perspective
    • A. B. Bolten and B. E. Witherington (Eds.), Washington, DC: Smithsonian Institution Press
    • Bowen BW (2003) What is a loggerhead turtle? The genetic perspective. In: Bolten AB, Witherington BE (eds) Loggerhead sea turtles. Smithsonian Institution Press, Washington, DC, pp 7-27.
    • (2003) Loggerhead Sea Turtles , pp. 7-27
    • Bowen, B.W.1
  • 9
    • 36348945345 scopus 로고    scopus 로고
    • Population genetics and phylogeography of sea turtles
    • Bowen BW, Karl SA (2007) Population genetics and phylogeography of sea turtles. Mol Ecol 16: 4886-4907.
    • (2007) Mol Ecol , vol.16 , pp. 4886-4907
    • Bowen, B.W.1    Karl, S.A.2
  • 10
    • 0028680652 scopus 로고
    • Global phylogeography of the loggerhead turtle (Caretta caretta) as indicated by mitochondrial DNA haplotypes
    • Bowen BW, Kamezaki N, Limpus CL, Hughes GL, Meylan AB, Avise JC (1994) Global phylogeography of the loggerhead turtle (Caretta caretta) as indicated by mitochondrial DNA haplotypes. Evol Int J Org Evol 48: 1820-1828.
    • (1994) Evol Int J Org Evol , vol.48 , pp. 1820-1828
    • Bowen, B.W.1    Kamezaki, N.2    Limpus, C.L.3    Hughes, G.L.4    Meylan, A.B.5    Avise, J.C.6
  • 13
    • 33845799820 scopus 로고    scopus 로고
    • Mixed-stock analysis reveals the migrations of juvenile hawksbill turtles (Eretmochelys imbricata) in the Caribbean Sea
    • Bowen BW, Grant WS, Hillis-Starr Z, Shaver DJ, Bjorndal KA, Bolten AB, Bass AL (2007) Mixed-stock analysis reveals the migrations of juvenile hawksbill turtles (Eretmochelys imbricata) in the Caribbean Sea. Mol Ecol 16: 49-60.
    • (2007) Mol Ecol , vol.16 , pp. 49-60
    • Bowen, B.W.1    Grant, W.S.2    Hillis-Starr, Z.3    Shaver, D.J.4    Bjorndal, K.A.5    Bolten, A.B.6    Bass, A.L.7
  • 14
    • 0034747188 scopus 로고    scopus 로고
    • Marine debris and human impacts on sea turtles in southern Brazil
    • Bugoni L, Krause L, Petry MV (2001) Marine debris and human impacts on sea turtles in southern Brazil. Mar Poll Bull 42: 1330-1334.
    • (2001) Mar Poll Bull , vol.42 , pp. 1330-1334
    • Bugoni, L.1    Krause, L.2    Petry, M.V.3
  • 15
    • 0002954941 scopus 로고
    • Rips, FADS, and little loggerheads
    • Carr A (1986) Rips, FADS, and little loggerheads. Bioscience 36: 92-100.
    • (1986) Bioscience , vol.36 , pp. 92-100
    • Carr, A.1
  • 16
    • 84989431980 scopus 로고
    • New perspectives on the pelagic stage of sea turtles development
    • Carr A (1987) New perspectives on the pelagic stage of sea turtles development. Conserv Biol 1: 103-121.
    • (1987) Conserv Biol , vol.1 , pp. 103-121
    • Carr, A.1
  • 18
    • 0028456728 scopus 로고
    • Root probabilities for intraspecific gene trees under neutral coalescent theory
    • Castelloe J, Templeton AR (1994) Root probabilities for intraspecific gene trees under neutral coalescent theory. Mol Phyl Evol 3: 102-113.
    • (1994) Mol Phyl Evol , vol.3 , pp. 102-113
    • Castelloe, J.1    Templeton, A.R.2
  • 19
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • Clement M, Posada D, Crandall K (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1659.
    • (2000) Mol Ecol , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.3
  • 20
    • 0030460036 scopus 로고    scopus 로고
    • Genetic diversity of populations of the freshwater shrimp Macrobrachium borelli (Cardidea, Palaemonidae) evaluated by RAPD analysis
    • Damato ME, Corach D (1996) Genetic diversity of populations of the freshwater shrimp Macrobrachium borelli (Cardidea, Palaemonidae) evaluated by RAPD analysis. J Crustac Biol 16: 650-655.
    • (1996) J Crustac Biol , vol.16 , pp. 650-655
    • Damato, M.E.1    Corach, D.2
  • 21
    • 0000227555 scopus 로고    scopus 로고
    • Population structure of loggerhead turtle (Caretta caretta) nesting colonies in the Atlantic and Mediterranean as inferred from mitochondrial DNA control region sequences
    • Encalada SE, Bjorndal KA, Bolten AB, Zurita JC, Schroeder B, Possardt E, Sears CJ, Bowen BW (1998) Population structure of loggerhead turtle (Caretta caretta) nesting colonies in the Atlantic and Mediterranean as inferred from mitochondrial DNA control region sequences. Mar Biol 130: 567-575.
    • (1998) Mar Biol , vol.130 , pp. 567-575
    • Encalada, S.E.1    Bjorndal, K.A.2    Bolten, A.B.3    Zurita, J.C.4    Schroeder, B.5    Possardt, E.6    Sears, C.J.7    Bowen, B.W.8
  • 22
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier L, Slatkin M (1995) Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 12: 921-927.
    • (1995) Mol Biol Evol , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 23
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 25
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 26
    • 84972492387 scopus 로고
    • Inference from iterative simulation using multiple sequences
    • Gelman A, Rubin DB (1992) Inference from iterative simulation using multiple sequences. Stat Sci 7: 457-511.
    • (1992) Stat Sci , vol.7 , pp. 457-511
    • Gelman, A.1    Rubin, D.B.2
  • 27
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 28
    • 0028484009 scopus 로고
    • Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution
    • Harpending RC (1994) Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hum Biol 66: 591-600.
    • (1994) Hum Biol , vol.66 , pp. 591-600
    • Harpending, R.C.1
  • 30
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9: 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 31
    • 85061893420 scopus 로고    scopus 로고
    • International union for the conservation of nature and natural resources
    • IUCN, Accessed 15 Jan 2009
    • IUCN (2008) International union for the conservation of nature and natural resources. 2008 IUCN red list of threatened species. Available from http://www.iucnredlist.org/. Accessed 15 Jan 2009.
    • (2008) 2008 IUCN Red List of Threatened Species
  • 32
    • 2342418532 scopus 로고    scopus 로고
    • Incidental capture of loggerhead (Caretta caretta) and leatherback (Dermochelys coriacea) sea turtles by the pelagic longline fishery off southern Brazil
    • Kotas JE, dos Santos S, de Azevedo VG, Gallo BM, Barata PC (2004) Incidental capture of loggerhead (Caretta caretta) and leatherback (Dermochelys coriacea) sea turtles by the pelagic longline fishery off southern Brazil. Fish Bull 102: 93-399.
    • (2004) Fish Bull , vol.102 , pp. 93-399
    • Kotas, J.E.1    Dos, S.S.2    de Azevedo, V.G.3    Gallo, B.M.4    Barata, P.C.5
  • 34
    • 0027098923 scopus 로고
    • Migration of green (Chelonia mydas) and loggerhead (Caretta caretta) turtles to and from eastern Australian rookeries
    • Limpus CJ, Miller JD, Parmenter CJ, Reimer D, McLachland N, Webb R (1992) Migration of green (Chelonia mydas) and loggerhead (Caretta caretta) turtles to and from eastern Australian rookeries. Wildl Res 19: 347-358.
    • (1992) Wildl Res , vol.19 , pp. 347-358
    • Limpus, C.J.1    Miller, J.D.2    Parmenter, C.J.3    Reimer, D.4    McLachland, N.5    Webb, R.6
  • 35
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
    • (1967) Cancer Res , vol.27 , pp. 209-220
    • Mantel, N.1
  • 36
    • 38549100320 scopus 로고    scopus 로고
    • Conservation status of the loggerhead sea turtle in Brazil: An encouraging outlook
    • Marcovaldi MA, Chaloupka M (2007) Conservation status of the loggerhead sea turtle in Brazil: an encouraging outlook. Endanger Species Res 3: 133-143.
    • (2007) Endanger Species Res , vol.3 , pp. 133-143
    • Marcovaldi, M.A.1    Chaloupka, M.2
  • 37
    • 70149109463 scopus 로고    scopus 로고
    • Projeto TAMAR-IBAMA: Twenty-five years protecting Brazilian sea turtles through a community-based conservation programme
    • Marcovaldi MA, Patri V, Thomé JC (2005) Projeto TAMAR-IBAMA: twenty-five years protecting Brazilian sea turtles through a community-based conservation programme. Marit Stud 3: 39-62.
    • (2005) Marit Stud , vol.3 , pp. 39-62
    • Marcovaldi, M.A.1    Patri, V.2    Thomé, J.C.3
  • 39
    • 0002938773 scopus 로고
    • Sea turtle migration-evidence from tag returns
    • K. A. Bjorndal (Ed.), Washington, DC: Smithsonian Institution Press
    • Meylan AB (1982) Sea turtle migration-evidence from tag returns. In: Bjorndal KA (ed) Biology and conservation of sea turtles. Smithsonian Institution Press, Washington, DC, pp 91-100.
    • (1982) Biology and Conservation of Sea Turtles , pp. 91-100
    • Meylan, A.B.1
  • 41
    • 0035110506 scopus 로고    scopus 로고
    • Bayesian methods for analysis of stock mixtures from genetic characters
    • Pella J, Masuda M (2001) Bayesian methods for analysis of stock mixtures from genetic characters. Fish Bull 99: 151-167.
    • (2001) Fish Bull , vol.99 , pp. 151-167
    • Pella, J.1    Masuda, M.2
  • 43
    • 0029178096 scopus 로고
    • An exact test for population differentiation
    • Raymond M, Rousset F (1995) An exact test for population differentiation. Evol Int J Org Evol 49: 1280-1283.
    • (1995) Evol Int J Org Evol , vol.49 , pp. 1280-1283
    • Raymond, M.1    Rousset, F.2
  • 44
    • 33745048781 scopus 로고    scopus 로고
    • Mixed stock analysis of juvenile loggerheads (Caretta caretta) in Indian River Lagoon, Florida: Implications for conservation planning
    • Reece JS, Ehrhart LM, Parkinson CL (2006) Mixed stock analysis of juvenile loggerheads (Caretta caretta) in Indian River Lagoon, Florida: implications for conservation planning. Cons Gen 7: 345-352.
    • (2006) Cons Gen , vol.7 , pp. 345-352
    • Reece, J.S.1    Ehrhart, L.M.2    Parkinson, C.L.3
  • 45
    • 77953962019 scopus 로고    scopus 로고
    • Reis EC (2008) Caracterização genética e filogeografia de populações de tartarugas marinhas da espécie Caretta caretta (Linnaeus, 1758) no litoral brasileiro. M. Sc. thesis, Universidade do Estado do Rio de Janeiro, Rio de Janeiro.
  • 46
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9: 552-569.
    • (1992) Mol Biol Evol , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 47
    • 46049106544 scopus 로고    scopus 로고
    • Incidental catch of sea turtles by the Brazilian pelagic longline fishery
    • Sales G, Giffoni BG, Barata PCR (2008) Incidental catch of sea turtles by the Brazilian pelagic longline fishery. J Mar Biol Assoc UK 88: 853-864.
    • (2008) J Mar Biol Assoc UK , vol.88 , pp. 853-864
    • Sales, G.1    Giffoni, B.G.2    Barata, P.C.R.3
  • 48
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA
    • Schneider S, Excoffier L (1999) Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152: 1079-1089.
    • (1999) Genetics , vol.152 , pp. 1079-1089
    • Schneider, S.1    Excoffier, L.2
  • 49
    • 3042824161 scopus 로고    scopus 로고
    • Phylogeography of olive ridley turtles (Lepidochelys olivacea) on the east coast of India: Implications for conservation theory
    • Shanker K, Ramadevi J, Choudhury C, Singh L, Aggarwal RK (2004) Phylogeography of olive ridley turtles (Lepidochelys olivacea) on the east coast of India: implications for conservation theory. Mol Ecol 13: 1899-1909.
    • (2004) Mol Ecol , vol.13 , pp. 1899-1909
    • Shanker, K.1    Ramadevi, J.2    Choudhury, C.3    Singh, L.4    Aggarwal, R.K.5
  • 50
    • 0023159436 scopus 로고
    • Gene flow and the geographic structure of natural populations
    • Slatkin M (1987) Gene flow and the geographic structure of natural populations. Science 236: 787-792.
    • (1987) Science , vol.236 , pp. 787-792
    • Slatkin, M.1
  • 51
    • 77953961878 scopus 로고    scopus 로고
    • Snover ML (2002) Growth and ontogeny of sea turtles using skeletochronology: methods, validation and application to conservation. Ph. D. thesis, Duke University, Durham.
  • 52
    • 77953962798 scopus 로고    scopus 로고
    • Soto JMR, Serafini TZ, Celini AAO (2003) Beach strandings of sea turtles in the state of Rio Grande do Sul: an indicator of gillnet interaction along the southern Brazilian coast. In: Seminoff JA (ed) Proceedings of the 22nd annual symposium on sea turtle biology and conservation. NOAA Technical Memorandum NMFS-SEFSC-503, p 276.
  • 53
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 54
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512-526.
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 55
    • 0026662698 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
    • Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619-633.
    • (1992) Genetics , vol.132 , pp. 619-633
    • Templeton, A.R.1    Crandall, K.A.2    Sing, C.F.3
  • 56
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright S (1951) The genetical structure of populations. Ann Eugen 15: 323-354.
    • (1951) Ann Eugen , vol.15 , pp. 323-354
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.