A large-scale study of differential gene expression in monocyte-derived macrophages infected with several strains of Mycobacterium avium subspecies paratuberculosis

Briefings in Functional Genomics and Proteomics

Volumn 9, Issue 3, 2010, Pages 220-237

  Kabara, Edward ^a   Kloss, Christopher C ^b   Wilson, Melind ^b   Tempelman, Robert J ^b   Sreevatsan, Srinand ^c   Janagama, Harish ^d   Coussens, Paul M ^b  

^a Michigan State University   (United States)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c UNIVERSITY OF MINNESOTA   (United States)

^d UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Bovine; Innate immunity; Johne's disease; Microarray; Mycobacteria

Indexed keywords

CYTOKINE; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

APOPTOSIS; ARTICLE; CLUSTER ANALYSIS; CONTROLLED STUDY; COW; DNA MICROARRAY; GENE EXPRESSION; HOST PATHOGEN INTERACTION; INNATE IMMUNITY; MICROARRAY ANALYSIS; MONOCYTE; MYCOBACTERIUM PARATUBERCULOSIS; NONHUMAN; PARATUBERCULOSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ANIMALS; CATTLE; CLUSTER ANALYSIS; DATA INTERPRETATION, STATISTICAL; GENE EXPRESSION; GENE EXPRESSION PROFILING; MACROPHAGES; MONOCYTES; MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

BOVINAE; CORYNEBACTERINEAE; MYCOBACTERIUM; MYCOBACTERIUM AVIUM;

EID: 77953946508     PISSN: 14739550     EISSN: 14774062     Source Type: Journal    
DOI: 10.1093/bfgp/elq009     Document Type: Article

References (60)

1. Spickler AR. Paratuberculosis (Johne's Disease) and Crohn's Disease, The Center for Food Security & Public Health, Iowa State University, Fact Sheet Update May 5, 2005. http://www.cfsph.iastate.edu/Factsheets/pdfs/paratuberculosis.pdf.
2. Tanaka S, Sato M, Onitsuka T, et al. Inflammatory cytokine gene expression in different types of granulomatous lesions during asymptomatic stages of bovine paratuberculosis. Vet Pathol 2005;42:579-88.
3. Jones RL. Review of the economic impact of Johne's disease in the United States. In: Wood ARMaPR (ed). Johne's Disease. CurrentTrends in Research, Diagnosis and Management. Melbourne, Victoria, Australia: Commonw. Sci. Ind. Res. Organ, 1989:46-50.
4. Whittington RJ, Marshall DJ, Nicholls PJ, et al. Survival and dormancy of Mycobacterium avium subsp. paratuberculosis in the environment. Appl Environ Microbiol 2004;70: 2989-3004.
5. Rowe MT, Grant IR. Mycobacterium avium ssp. paratuberculosis and its potential survival tactics. Lett Appl Microbiol 2006;42:305-11.
6. Johne HA, Frothingham J. Ein eigenthuemlicher fall von tuberculose beim rind. Dtsch Z Tiermed Pathol 1985;21: 438-54.
7. Begg DJ, Griffin JF. Vaccination of sheep against M. paratuberculosis: immune parameters and protective efficacy. Vaccine 2005;23:4999-5008.
8. McDonald WL, Ridge SE, Hope AF, et al. Evaluation of diagnostic tests for Johne's disease in young cattle. Aust Vet J 1999;77:113-9.
9. Ellingson JL, Anderson JL, Koziczkowski JJ, et al. Detection of viable Mycobacterium avium subsp. paratuberculosis in retail pasteurized whole milk by two culture methods and PCR. J Food Prot 2005;68:966-72.
10. Clark DL, Jr, Anderson JL, Koziczkowski JJ, et al. Detection of Mycobacterium avium subspecies paratuberculosis genetic components in retail cheese curds purchased in Wisconsin and Minnesota by PCR. Mol Cell Probes 2006; 20:197-202.
11. Chamberlin WM, Naser SA. Integrating theories of the etiology of Crohn's disease. On the etiology of Crohn's disease: questioning the hypotheses. Med Sci Monit 2006; 12:RA27-33.
12. El-Zaatari FA, Osato MS, Graham DY. Etiology of Crohn's disease: the role of Mycobacterium avium paratuberculosis. Trends Mol Med 2001;7:247-52.
13. Nguyen L, Pieters J. The Trojan horse: survival tactics of pathogenic mycobacteria in macrophages. Trends Cell Biol 2005;15:269-76.
14. Tuberculosis. http://www.who.int/mediacentre/factsheets/fs104/en/index.html (1 August 2007, date last accessed).
15. Hashimoto T. Experimental studies on the mechanism of infection and immunity in tuberculosis from the analytical standpoint of streptomycin-dependent tubercle bacilli. 1. Isolation and biological characteristics of a streptomycindependent mutant, and effect of streptomycin administration on its pathogenicity in guinea-pigs. Kekkaku 1955;30: 4-8; English summary, 45-6.
16. Coussens PM. Model for immune responses to Mycobacterium avium subspecies paratuberculosis in cattle. Infect Immun 2004;72:3089-96.
17. Murphy JT, Sommer S, Kabara EA, et al. Gene expression profiling of monocyte-derived macrophages following infection with Mycobacterium avium subspecies avium and Mycobacterium avium subspecies paratuberculosis. Physiol Genomics 2006;28:67-75.
18. Janagama HK, Jeong KI, Kapur V, et al. Cytokine responses of bovine macrophages to diverse clinical Mycobacterium avium subspecies paratuberculosis strains. BMC Microbiol 2006;6:10.
19. Chiang SK, Sommer S, Aho AD, et al. Relationship between Mycobacterium avium subspecies paratuberculosis, IL-1alpha, and TRAF1 in primary bovine monocytederived macrophages. Vet Immunol Immunopathol 2007;116: 131-44.
20. Woo SR, Sotos J, Hart AP, et al. Bovine monocytes and a macrophage cell line differ in their ability to phagocytose and support the intracellular survival of Mycobacterium avium subsp. paratuberculosis. Vet Immunol Immunopathol 2006;110:109-20.
21. Churchill GA. Fundamentals of experimental design for cDNA microarrays. Nat Genet 2002;32(Suppl):490-5.
22. Allison DB, Gadbury GL, Heo M, et al. A mixture model approach for the analysis of microarray gene expression data. Computat Stat & Data Anal 2002;39:1-20.
23. Eisen MB, Spellman PT, Brown PO, et al. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998;95:14863-8.
24. Dennis G, Jr, Sherman BT, Hosack DA, et al. DAVID: Database for annotation, visualization, and integrated discovery. Genome Biol 2003;4:P3.
25. Coussens PM, Pudrith CB, Skovgaard K, et al. Johne's disease in cattle is associated with enhanced expression of genes encoding IL-5, GATA-3, tissue inhibitors of matrix metalloproteinases 1 and 2, and factors promoting apoptosis in peripheral blood mononuclear cells. Vet Immunol Immunopathol 2005;105:221-34.
26. Coussens PM, Verman N, Coussens MA, et al. Cytokine gene expression in peripheral blood mononuclear cells and tissues of cattle infected with Mycobacterium avium subsp. paratuberculosis: evidence for an inherent proinflammatory gene expression pattern. Infect Immun 2004;72:1409-22.
27. Coussens PM, Colvin CJ, Wiersma K, et al. Gene expression profiling of peripheral blood mononuclear cells from cattle infected with Mycobacterium paratuberculosis. Infect Immun 2002;70:5494-502.
28. Marsh IB, Bannantine JP, Paustian ML, et al. Genomic comparison of Mycobacterium avium subsp. paratuberculosis sheep and cattle strains by microarray hybridization. J Bacteriol 2006;188:2290-3.
29. Kelly DM, ten Bokum AM, O'Leary SM, et al. Bystander macrophage apoptosis after Mycobacterium tuberculosis H37Ra infection. Infect Immun 2008;76:351-60.
30. Collins DM, Gabric DM, de Lisle GW. Identification of two groups of Mycobacterium paratuberculosis strains by restriction endonuclease analysis and DNA hybridization. J Clin Microbiol 1990;28:1591-6.
31. de Lisle GW, Yates GF, Collins DM. Paratuberculosis in farmed deer: case reports and DNA characterization of isolates of Mycobacterium paratuberculosis. J Vet Diagn Invest 1993;5:567-71.
32. Whittington RJ, Hope AF, Marshall DJ, et al. Molecular epidemiology of Mycobacterium avium subsp. paratuberculosis: IS900 restriction fragment length polymorphism and IS1311 polymorphism analyses of isolates from animals and a human in Australia. J Clin Microbiol 2000;38:3240-8.
33. Motiwala AS, Amonsin A, Strother M, et al. Molecular epidemiology of Mycobacterium avium subsp. paratuberculosis isolates recovered from wild animal species. J Clin Microbiol 2004;42:1703-12.
34. Wu CW, Schramm TM, Zhou S, et al. Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome. BMC Genomics 2009;10:25.
35. Weiss DJ, Evanson OA, Deng M, et al. Gene expression and antimicrobial activity of bovine macrophages in response to Mycobacterium avium subsp. paratuberculosis. Vet Pathol 2004;41:326-37.
36. Winau F, Kaufmann SH, Schaible UE. Apoptosis paves the detour path for CD8 T cell activation against intracellular bacteria. Cell Microbiol 2004;6:599-607.
37. Keane J, Remold HG, Kornfeld H. Virulent Mycobacterium tuberculosis strains evade apoptosis of infected alveolar macrophages. J Immunol 2000;164: 2016-20.
38. Liu X, Zou H, Slaughter C, et al. DFF, a heterodimeric protein that functions downstream of caspase-3 to trigger DNA fragmentation during apoptosis. Cell 1997;89:175-84.
39. Nicholson DW, Ali A, Thornberry NA, et al. Identification and inhibition of the ICE/CED-3 protease necessary for mammalian apoptosis. Nature 1995;376:37-43.
40. Faucheu C, Diu A, Chan AW, et al. A novel human protease similar to the interleukin-1 beta converting enzyme induces apoptosis in transfected cells. Embo J 1995;14: 1914-22.
41. Keller M, Ruegg A, Werner S, et al. Active caspase-1 is a regulator of unconventional protein secretion. Cell 2008; 132:818-31.
42. Barnes PJ, Karin M. Nuclear factor-kappaB: a pivotal transcription factor in chronic inflammatory diseases. N Engl J Med 1997;336:1066-71.
43. Dong W, Liu Y, Peng J, et al. The IRAK-1-BCL10-MALT1-TRAF6-TAK1 cascade mediates signaling to NF-kappaB from Toll-like receptor 4. J Biol Chem 2006; 281:26029-26040.
44. Lee JS, Lee JY, Son JW, et al. Expression and regulation of the CC-chemokine ligand 20 during human tuberculosis. Scand J Immunol 2008;67:77-85.
45. Ray JC, Flynn JL, Kirschner DE. Synergy between individual TNF-dependent functions determines granuloma performance for controlling Mycobacterium tuberculosis infection. J Immunol 2009;182:3706-17.
46. Lemke G, Lu Q. Macrophage regulation by Tyro 3 family receptors. Curr Opin Immunol 2003;15:31-6.
47. Lettre G, Rioux JD. Autoimmune diseases: insights from genome-wide association studies. Hum Mol Genet 2008;17: R116-21.
48. Waddell LA, Rajic A, Sargeant J, et al. The zoonotic potential of Mycobacterium avium spp. paratuberculosis: a systematic review. Can J Public Health 2008;99:145-55.
49. Quante M, Raskopf E, Stahl S, et al. No functional and transductional significance of specific neuropilin 1 siRNA inhibition in colon carcinoma cell lines lacking VEGF receptor 2. Oncol Rep 2009;21:1161-8.
50. Byrd VM, Ballard DW, Miller GG, et al. Fibroblast growth factor-1 (FGF-1) enhances IL-2 production and nuclear translocation of NF-kappaB in FGF receptor-bearing Jurkat T cells. J Immunol 1999;162:5853-9.
51. Korf H, Vander Beken S, Romano M, et al. Liver X receptors contribute to the protective immune response against Mycobacterium tuberculosis in mice. J Clin Invest 2009;119:1626-37.
52. Chawla A, Repa JJ, Evans RM, et al. Nuclear receptors and lipid physiology: opening the X-files. Science 2001;294: 1866-70.
53. Nuckels RJ, Ng A, Darland T, et al. The vacuolar-ATPase complex regulates retinoblast proliferation and survival, photoreceptor morphogenesis, and pigmentation in the zebrafish eye. Invest Ophthalmol Vis Sci 2009;50: 893-905.
54. Cheville NF, Hostetter J, Thomsen BV, et al. Intracellular trafficking of Mycobacterium avium ss. paratuberculosis in macrophages. Dtsch Tierarztl Wochenschr 2001;108:236-43.
55. Online Mendelian Inheritance in Man, OMIM (TM). (http://www.ncbi.nlm.nih.gov/omim/) (10 April 2009, date last accessed).
56. Glatzel A, Wesch D, Schiemann F, et al. Patterns of chemokine receptor expression on peripheral blood gamma delta T lymphocytes: strong expression of CCR5 is a selective feature of V delta 2/V gamma 9 gamma delta T cells. J Immunol 2002;168:4920-9.
57. Bermudez LE, Parker A, Petrofsky M. Apoptosis of Mycobacterium avium-infected macrophages is mediated by both tumour necrosis factor (TNF) and Fas, and involves the activation of caspases. Clin Exp Immunol 1999; 116:94-9.
58. Wieland CW, Florquin S, Chan ED, et al. Pulmonary Mycobacterium tuberculosis infection in leptin-deficient ob/ob mice. Int Immunol 2005;17:1399-408.
59. Werninghaus K, Babiak A, Gross O, et al. Adjuvanticity of a synthetic cord factor analogue for subunit Mycobacterium tuberculosis vaccination requires FcRgamma-Syk-Card9-dependent innate immune activation. J Exp Med 2009;206:89-97.
60. Marchal G. Preferential differentiation of hematopoietic stem cells in mice after intravenous injection of BCG. C R Acad Sci Hebd Seances Acad Sci D 1976;282:1829-32.