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Volumn 132, Issue 23, 2010, Pages

Communications: Is quantum chemical treatment of biopolymers accurate? Intramolecular basis set superposition error (BSSE)

Author keywords

[No Author keywords available]

Indexed keywords

BASIS SET SUPERPOSITION ERRORS; BASIS SETS; COMPLETE BASIS SET LIMIT; COUNTERPOISE CORRECTION; DENSITY FUNCTIONALS; GAS-PHASE STABILITY; NON-ADDITIVE; ORDER OF MAGNITUDE; POLYALANINE; POLYGLYCINE; QUANTUM CHEMICAL TREATMENT; RELATIVE ENERGIES; SECONDARY STRUCTURE ELEMENTS; SECONDARY STRUCTURES;

EID: 77953851670     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3442466     Document Type: Article
Times cited : (46)

References (48)
  • 3
    • 0034829669 scopus 로고    scopus 로고
    • Structure and conformational behavior of biopolymers by density functional calculations employing periodic boundary conditions. I. The case of polyglycine, polyalanine, and poly-α-aminoisobutyric acid in vacuo
    • DOI 10.1021/ja003680e
    • R. Improta, V. Barone, K. N. Kudin, and G. E. Scuseria, J. Am. Chem. Soc. JACSAT 0002-7863 123, 3311 (2001). 10.1021/ja003680e (Pubitemid 32884620)
    • (2001) Journal of the American Chemical Society , vol.123 , Issue.14 , pp. 3311-3322
    • Improta, R.1    Barone, V.2    Kudin, K.N.3    Scuseria, G.E.4
  • 5
    • 0021118508 scopus 로고
    • ARBOAW 0066-4154,. 10.1146/annurev.bi.53.070184.002541
    • C. Chothia, Annu. Rev. Biochem. ARBOAW 0066-4154 53, 537 (1984). 10.1146/annurev.bi.53.070184.002541
    • (1984) Annu. Rev. Biochem. , vol.53 , pp. 537
    • Chothia, C.1
  • 6
    • 0020997912 scopus 로고
    • BIPMAA 0006-3525,. 10.1002/bi360221211
    • W. Kabsch and C. Sander, Biopolymers BIPMAA 0006-3525 22, 2577 (1983). 10.1002/bip.360221211
    • (1983) Biopolymers , vol.22 , pp. 2577
    • Kabsch, W.1    Sander, C.2
  • 8
    • 67149096041 scopus 로고    scopus 로고
    • IJMCFK 1422-0067,. 10.3390/ijms10041567
    • B. Wathen and J. Zongchao, Int. J. Mol. Sci. IJMCFK 1422-0067 10, 1567 (2009). 10.3390/ijms10041567
    • (2009) Int. J. Mol. Sci. , vol.10 , pp. 1567
    • Wathen, B.1    Zongchao, J.2
  • 9
    • 0031899035 scopus 로고    scopus 로고
    • Artificial fibrous proteins: A review
    • DOI 10.1016/S0300-9084(98)80053-9
    • H. Heslot, Biochimie BICMBE 0300-9084 80, 19 (1998). 10.1016/S0300- 9084(98)80053-9 (Pubitemid 28211650)
    • (1998) Biochimie , vol.80 , Issue.1 , pp. 19-31
    • Heslot, H.1
  • 11
    • 0028986379 scopus 로고
    • APCHA2 0065-3233,. 10.1016/S0065-3233(08)60334-4
    • A. Chakrabartty and R. L. Baldwin, Adv. Protein Chem. APCHA2 0065-3233 46, 141 (1995). 10.1016/S0065-3233(08)60334-4
    • (1995) Adv. Protein Chem. , vol.46 , pp. 141
    • Chakrabartty, A.1    Baldwin, R.L.2
  • 12
    • 69949106109 scopus 로고    scopus 로고
    • CHPLBC 0009-2614,. 10.1016/j.cplett.2009.08.038
    • R. M. Balabin, Chem. Phys. Lett. CHPLBC 0009-2614 479, 195 (2009). 10.1016/j.cplett.2009.08.038
    • (2009) Chem. Phys. Lett. , vol.479 , pp. 195
    • Balabin, R.M.1
  • 15
    • 33745663265 scopus 로고    scopus 로고
    • Cooperative 4-pyridone H-bonds with extraordinary stability. A DFT molecular orbital study
    • DOI 10.1021/ja060494l
    • Y. -F. Chen and J. J. Dannenberg, J. Am. Chem. Soc. JACSAT 0002-7863 128, 8100 (2006). 10.1021/ja060494l (Pubitemid 43967730)
    • (2006) Journal of the American Chemical Society , vol.128 , Issue.25 , pp. 8100-8101
    • Chen, Y.-F.1    Dannenberg, J.J.2
  • 16
    • 27144463436 scopus 로고    scopus 로고
    • Enthalpies of hydrogen-bonds in α-helical peptides. An ONIOM DFT/AM1 study
    • DOI 10.1021/ja053839t
    • R. Wieczorek and J. J. Dannenberg, J. Am. Chem. Soc. JACSAT 0002-7863 127, 14534 (2005). 10.1021/ja053839t (Pubitemid 41510970)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.42 , pp. 14534-14535
    • Wieczorek, R.1    Dannenberg, J.J.2
  • 17
    • 29044437582 scopus 로고    scopus 로고
    • The energetic and structural effects of single amino acid substitutions upon capped α-helical peptides containing 17 amino acid residues. An ONIOM DFT/AM1 study
    • DOI 10.1021/ja052689j
    • R. Wieczorek and J. J. Dannenberg, J. Am. Chem. Soc. JACSAT 0002-7863 127, 17216 (2005). 10.1021/ja052689j (Pubitemid 41791039)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.49 , pp. 17216-17223
    • Wieczorek, R.1    Dannenberg, J.J.2
  • 20
    • 0037015737 scopus 로고    scopus 로고
    • 3I. Structural and energy analysis including relativistic zero-order regular approximation approach in a density functional theory framework
    • DOI 10.1021/jp0255334
    • P. Romaniello and F. Lelj, J. Phys. Chem. A JPCAFH 1089-5639 106, 9114 (2002). 10.1021/jp0255334 (Pubitemid 35382385)
    • (2002) Journal of Physical Chemistry A , vol.106 , Issue.39 , pp. 9114-9119
    • Romaniello, P.1    Lelj, F.2
  • 22
    • 50249156968 scopus 로고    scopus 로고
    • CMPHC2 0301-0104,. 10.1016/j.chemphys.2008.06.015
    • R. M. Balabin, Chem. Phys. CMPHC2 0301-0104 352, 267 (2008). 10.1016/j.chemphys.2008.06.015
    • (2008) Chem. Phys. , vol.352 , pp. 267
    • Balabin, R.M.1
  • 23
    • 55349093934 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.2997349
    • R. M. Balabin, J. Chem. Phys. JCPSA6 0021-9606 129, 164101 (2008). 10.1063/1.2997349
    • (2008) J. Chem. Phys. , vol.129 , pp. 164101
    • Balabin, R.M.1
  • 24
    • 34250641957 scopus 로고    scopus 로고
    • Insufficient description of dispersion in B3LYP and large basis set superposition errors in MP2 calculations can hide peptide conformers
    • DOI 10.1016/j.cplett.2007.05.072, PII S0009261407006598
    • L. F. Holroyd and T. van Mourik, Chem. Phys. Lett. CHPLBC 0009-2614 442, 42 (2007). 10.1016/j.cplett.2007.05.072 (Pubitemid 46935107)
    • (2007) Chemical Physics Letters , vol.442 , Issue.1-3 , pp. 42-46
    • Holroyd, L.F.1    Van Mourik, T.2
  • 26
    • 42149135944 scopus 로고    scopus 로고
    • Intramolecular basis set superposition error effects on the planarity of benzene and other aromatic molecules: A solution to the problem
    • DOI 10.1063/1.2902974
    • D. Asturiol, M. Duran, and P. Salvador, J. Chem. Phys. JCPSA6 0021-9606 128, 144108 (2008). 10.1063/1.2902974 (Pubitemid 351537145)
    • (2008) Journal of Chemical Physics , vol.128 , Issue.14 , pp. 144108
    • Asturiol, D.1    Duran, M.2    Salvador, P.3
  • 28
    • 70449379364 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.3249968
    • R. M. Balabin, J. Chem. Phys. JCPSA6 0021-9606 131, 154307 (2009). 10.1063/1.3249968
    • (2009) J. Chem. Phys. , vol.131 , pp. 154307
    • Balabin, R.M.1
  • 29
    • 69249187434 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.3206326
    • R. M. Balabin and E. I. Lomakina, J. Chem. Phys. JCPSA6 0021-9606 131, 074104 (2009). 10.1063/1.3206326
    • (2009) J. Chem. Phys. , vol.131 , pp. 074104
    • Balabin, R.M.1    Lomakina, E.I.2
  • 31
    • 4344577294 scopus 로고    scopus 로고
    • JPCAFH 1089-5639,. 10.1021/jp048147q
    • Y. Zhao and D. G. Truhlar, J. Phys. Chem. A JPCAFH 1089-5639 108, 6908 (2004). 10.1021/jp048147q
    • (2004) J. Phys. Chem. A , vol.108 , pp. 6908
    • Zhao, Y.1    Truhlar, D.G.2
  • 32
    • 40549127108 scopus 로고    scopus 로고
    • ACHRE4 0001-4842,. 10.1021/ar700111a
    • Y. Zhao and D. G. Truhlar, Acc. Chem. Res. ACHRE4 0001-4842 41, 157 (2008). 10.1021/ar700111a
    • (2008) Acc. Chem. Res. , vol.41 , pp. 157
    • Zhao, Y.1    Truhlar, D.G.2
  • 34
    • 0001675857 scopus 로고    scopus 로고
    • Second order Møller-Plesset perturbation theory without basis set superposition error
    • DOI 10.1063/1.476931, PII S0021960698301300
    • I. Mayer and P. Valiron, J. Chem. Phys. JCPSA6 0021-9606 109, 3360 (1998). 10.1063/1.476931 (Pubitemid 128678238)
    • (1998) Journal of Chemical Physics , vol.109 , Issue.9 , pp. 3360-3373
    • Mayer, I.1    Valiron, P.2
  • 35
    • 0042208350 scopus 로고    scopus 로고
    • - anion in the ozonation of alcohols: Large differences in the gas-phase and in the solution-phase mechanism
    • DOI 10.1021/ja030245m
    • A. Wu, D. Cremer, and B. Plesniar, J. Am. Chem. Soc. JACSAT 0002-7863 125, 9395 (2003). 10.1021/ja030245m (Pubitemid 36936059)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.31 , pp. 9395-9402
    • Wu, A.1    Cremer, D.2    Plesnicar, B.3
  • 36
    • 65649112447 scopus 로고    scopus 로고
    • JPCAFH 1089-5639, () 10.1021/jp9002643;, J. Phys. Chem. A JPCAFH 1089-5639 113, 1012 (2009). 10.1021/jp809639s
    • R. M. Balabin, J. Phys. Chem. A JPCAFH 1089-5639 113, 4910 (2009) 10.1021/jp9002643; R. M. Balabin, J. Phys. Chem. A JPCAFH 1089-5639 113, 1012 (2009). 10.1021/jp809639s
    • (2009) J. Phys. Chem. A , vol.113 , pp. 4910
    • Balabin, R.M.1    Balabin, R.M.2
  • 37
    • 77949462328 scopus 로고    scopus 로고
    • JPCAFH 1089-5639,. 10.1021/jp911802v
    • R. M. Balabin, J. Phys. Chem. A JPCAFH 1089-5639 114, 3698 (2010). 10.1021/jp911802v
    • (2010) J. Phys. Chem. A , vol.114 , pp. 3698
    • Balabin, R.M.1
  • 38
    • 34547239960 scopus 로고    scopus 로고
    • 10-helix versus strand stability in homopolypeptides and its implications for the accuracy of the amber force field
    • DOI 10.1002/jcc.20616
    • A. Jagielska and J. Skolnick, J. Comput. Chem. JCCHDD 0192-8651 28, 1648 (2007). 10.1002/jcc.20616 (Pubitemid 47146540)
    • (2007) Journal of Computational Chemistry , vol.28 , Issue.10 , pp. 1648-1657
    • Jagielska, A.1    Skolnick, J.2
  • 39
    • 37349094364 scopus 로고    scopus 로고
    • Petroleum resins adsorption onto quartz sand: Near infrared (NIR) spectroscopy study
    • DOI 10.1016/j.jcis.2007.10.045, PII S0021979707016153
    • R. M. Balabin and R. Z. Syunyaev, J. Colloid Interface Sci. JCISA5 0021-9797 318, 167 (2008). 10.1016/j.jcis.2007.10.045 (Pubitemid 350299387)
    • (2008) Journal of Colloid and Interface Science , vol.318 , Issue.2 , pp. 167-174
    • Balabin, R.M.1    Syunyaev, R.Z.2
  • 41
    • 34547773178 scopus 로고    scopus 로고
    • Quantitative measurement of ethanol distribution over fractions of ethanol-gasoline fuel
    • DOI 10.1021/ef070081l
    • R. M. Balabin, R. Z. Syunyaev, and S. A. Karpov, Energy Fuels ENFUEM 0887-0624 21, 2460 (2007). 10.1021/ef070081l (Pubitemid 47225563)
    • (2007) Energy and Fuels , vol.21 , Issue.4 , pp. 2460-2465
    • Balabin, R.M.1    Syunyaev, R.Z.2    Karpov, S.A.3
  • 44
    • 84890021933 scopus 로고
    • MOPHAM 0026-8976,. 10.1080/00268977000101561
    • S. F. Boys and F. Bernardi, Mol. Phys. MOPHAM 0026-8976 19, 553 (1970). 10.1080/00268977000101561
    • (1970) Mol. Phys. , vol.19 , pp. 553
    • Boys, S.F.1    Bernardi, F.2
  • 45
    • 65249181578 scopus 로고    scopus 로고
    • JCTCCE 1549-9618,. 10.1021/ct800511q
    • M. Korth and S. Grimme, J. Chem. Theory Comput. JCTCCE 1549-9618 5, 993 (2009). 10.1021/ct800511q
    • (2009) J. Chem. Theory Comput. , vol.5 , pp. 993
    • Korth, M.1    Grimme, S.2
  • 46
    • 77954834949 scopus 로고    scopus 로고
    • The identification of the two missing conformers of gas-phase alanine: a jet-cooled Raman spectroscopy study
    • 10.1039/b924029b
    • .: R. M. Balabin, The identification of the two missing conformers of gas-phase alanine: a jet-cooled Raman spectroscopy study. Phys. Chem. Chem. Phys.12, 5980-5982 2010); 10.1039/b924029b.
    • (2010) Phys. Chem. Chem. Phys. , vol.12 , pp. 5980-5982
    • Balabin, R.M.1
  • 47
    • 77953862071 scopus 로고    scopus 로고
    • 2] conformers.
    • 2] conformers.
  • 48
    • 77953578252 scopus 로고    scopus 로고
    • Communications: Intramolecular basis set superposition error as a measure of basis set incompleteness: Can one reach the basis set limit without extrapolation?
    • Art nr 211103
    • R. M. Balabin, Communications: Intramolecular basis set superposition error as a measure of basis set incompleteness: Can one reach the basis set limit without extrapolation? Journal of Chemical Physics ,132(21),(2010); 211103
    • (2010) Phys. Chem. Chem. Phys. , vol.132 , Issue.21
    • Balabin, R.M.1


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