The spatial expression and regulation of transcription factors IDEF1 and IDEF2

Annals of Botany

Volumn 105, Issue 7, 2010, Pages 1109-1117

  Kobayashi, Takanori ^a   Ogo, Yuko ^a   Aung, May Sann ^a   Nozoye, Tomoko ^a   Itai, Reiko Nakanishi ^a   Nakanishi, Hiromi ^a   Yamakawa, Takashi ^a   Nishizawa, Naoko K ^a,b  

^a UNIVERSITY OF TOKYO   (Japan)

^b ISHIKAWA PREFECTURAL UNIVERSITY   (Japan)

Author keywords

IDE; IDEF; iron deficiency; Oryza sativa; reproductive organs; seeds; transcriptional regulation; vegetative organs

Indexed keywords

VEGETABLE PROTEIN;

EMBRYO; GENE EXPRESSION; HISTOLOGY; IRON; MORPHOLOGY; NUTRIENT AVAILABILITY; NUTRIENT UPTAKE; POLLEN; PROTEIN; RICE; ROOT SYSTEM; SPATIAL ANALYSIS; TRANSGENIC PLANT; VASCULAR PLANT;

ARTICLE; ENDOSPERM; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHYSIOLOGY; PLANT ROOT; PLANT SEED; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RICE; TRANSGENIC PLANT;

ENDOSPERM; GENE EXPRESSION REGULATION, PLANT; ORYZA SATIVA; PLANT PROTEINS; PLANT ROOTS; PLANTS, GENETICALLY MODIFIED; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEEDS;

ORYZA SATIVA;

EID: 77953846566     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcq002     Document Type: Article

References (37)

1. Aoyama T, Kobayashi T, Takahashi M, et al. 2009. OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints. Plant Molecular Biology 70: 681-692.
2. Bashir K, Inoue H, Nagasaka S, et al. 2006. Cloning and characterization of deoxymugineic acid synthase genes from graminaceous plants. Journal of Biological Chemistry 43: 32395-32402.
3. Bughio N, Yamaguchi H, Nishizawa NK, et al. 2002. Cloning an ironregulated metal transporter from rice. Journal of Experimental Botany 53: 1677-1682.
4. Curie C, Panavience Z, Loulergue C, et al. 2001. Maize yellow stripe1 encodes a membrane protein directly involved in Fe(III) uptake. Nature 409: 346-349.
5. Curie C, Cassin G, Couch D, et al. 2008. Metal movement within the plant: contribution of nicotianamine and yellow stripe 1-like transporters. Annals of Botany 103: 1-11.
6. Enomoto Y, Hodoshima H, Shimada H, et al. 2007. Long-distance signals positively regulate the expression of iron uptake genes in tobacco roots. Planta 227: 81-89.
7. Enomoto Y, Hashida S, Shoji K, et al. 2009. Expression of iron uptake genes in roots are affected by long-distance signals both in non-graminaceous and in graminaceous plants. In: Brown P. ed. Proceedings of XVI International Plant Nutrition Colloquium, Paper 1209.
8. Grusak MA, Dellapenna D. 1999. Improving the nutrient composition of plants to enhance human nutrition and health. Annual Review of Plant Physiology and Plant Molecular Biology 50: 133-161.
9. Guerinot ML, Yi Y. 1994. Iron: nutritious, noxious, and not readily available. Plant Physiology 104: 815-820.
10. Hiei Y, Ohta S, Komari T, et al. 1994. Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. The Plant Journal 6: 271-282.
11. Higuchi K, Watanabe S, Takahashi M, et al. 2001. Nicotianamine synthase gene expression differs in barley and rice under Fe-deficient conditions. The Plant Journal 25: 159-167. (Pubitemid 32122750)
12. Inoue H, Higuchi K, Takahashi M, et al. 2003. Three rice nicotianamine synthase genes, OsNAS1, OsNAS2 and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron. The Plant Journal 36: 366-381.
13. Inoue H, Takahashi M, Kobayashi T, et al. 2008. Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice. Plant Molecular Biology 66: 193-203.
14. Inoue H, Kobayashi T, Nozoye T, et al. 2009. Rice OsYSL15 is an ironregulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings. Journal of Biological Chemistry 284: 3470-3479.
15. Ishimaru Y, Suzuki M, Tsukamoto T, et al. 2006. Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+. The Plant Journal 45: 335-346.
16. Kobayashi T, Nishizawa NK. 2008. Regulation of iron and zinc uptake and translocation in rice. In: Hirano HY, Hirai A, Sano Y, Sasaki T. eds. Biotechnology in agriculture and forestry 62. Rice biology in the genomics era. Krips bv, Meppel, The Netherlands: Springer, 321-335.
17. Kobayashi T, Nakayama Y, Itai RN, et al. 2003. Identification of novel cis-acting elements, IDE1 and IDE2, of the barley IDS2 gene promoter conferring iron-deficiency-inducible, root-specific expression in heterogeneous tobacco plants. The Plant Journal 36: 780-793.
18. Kobayashi T, Nakayama Y, Takahashi M, et al. 2004. Construction of artificial promoters highly responsive to iron deficiency. Soil Science and Plant Nutrition 50: 1167-1175.
19. Kobayashi T, Suzuki M, Inoue H, et al. 2005. Expression of iron-acquisition-related genes in iron-deficient rice is co-ordinately induced by partially conserved iron-deficiency-responsive elements. Journal of Experimental Botany 56: 1305-1316.
20. Kobayashi T, Ogo Y, Itai RN, et al. 2007. The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants. Proceedings of the National Academy of Sciences USA 104: 19150-19155.
21. Kobayashi T, Itai RN, Ogo Y, et al. 2009. The rice transcription factor IDEF1 is essential for the early response to iron deficiency and induces vegetative expression of late embryogenesis abundant genes. The Plant Journal 60: 948-961.
22. Koike S, Inoue H, Mizuno D, et al. 2004. OsYSL2 is a rice metalnicotianamine transporter that is regulated by iron and expressed in the phloem. The Plant Journal 39: 415-424.
23. Marschner H. 1995. Mineral nutrition of higher plants, 2nd edn. London: Academic Press.
24. Marschner H, Römheld V, Kissel M. 1986. Different strategies in higher plants in mobilization and uptake of iron. Journal of Plant Nutrition 9: 695-713.
25. Maruyama-Nakashita A, Nakamura Y, Tohge T, et al. 2006. Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism. The Plant Cell 18: 3235-3251.
26. Matsuyama T, Sasamoto H, Nakazono M, et al. 2008. The application of tetsuriki-agri (and/or aqua) to the plants. In: Proceedings of XIV International Symposium on Iron Nutrition and Interactions in Plants, 69.
27. Mori S, Nishizawa N. 1987. Methionine as a dominant precursor of phytosiderophores in Graminaceae plants. Plant and Cell Physiology 28: 1081-1092.
28. Nakajima K, Sena G, Nawy T, et al. 2001. Intercellular movement of the putative transcription factor SHR in root pattening. Nature 413: 307-311.
29. Nozoye T, Inoue H, Takahashi M, et al. 2007. The expression of iron homeostasis-related genes during rice germination. Plant Molecular Biology 64: 35-47.
30. Ogo Y, Itai RN, Nakanishi H, et al. 2006. Isolation and characterization of IRO2, a novel iron-regulated bHLH transcription factor in graminaceous plants. Journal of Experimental Botany 57: 2867-2878.
31. Ogo Y, Itai RN, Nakanishi H, et al. 2007. The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions. The Plant Journal 51: 366-377.
32. Ogo Y, Kobayashi T, Itai RN, et al. 2008. A novel NAC transcription factor IDEF2 that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants. Journal of Biological Chemistry 283: 13407-13417.
33. Ogo Y, Itai RN, Kobayashi T, et al. 2009. Overexpression of OsIRO2 improves both iron uptake and translocation to seeds in rice. In: Brown P. ed. Proceedings of XVI International Plant Nutrition Colloquium, paper 1204.
34. Shojima S, Nishizawa NK, Fushiya S, et al. 1990. Biosynthesis of phytosiderophores: in vitro biosynthesis of 2'-deoxymugineic acid from L-methionine and nicotianamine. Plant Physiology 93: 1497-1503.
35. Suzuki M, McCarty D. 2008. Functional symmetry of the B3 network controlling seed development. Current Opinion in Plant Biology 11: 548-553.
36. Suzuki M, Kao CY, McCarty DR. 1997. The conserved B3 domain of Viviparous1 has a cooperative DNA binding activity. Plant Cell 9: 799-807.
37. Takagi S. 1976. Naturally occurring iron-chelating compounds in oat- and rice-root washings. Soil Science and Plant Nutrition 22: 423-433