-
2
-
-
0027492268
-
The binding change mechanism for ATP synthase-some probabilities and possibilities
-
Boyer P.D. The binding change mechanism for ATP synthase-some probabilities and possibilities. Biochim. Biophys. Acta 1993, 1140:215-250.
-
(1993)
Biochim. Biophys. Acta
, vol.1140
, pp. 215-250
-
-
Boyer, P.D.1
-
3
-
-
0027970177
-
o ATP synthases suggested by double mutants of the a subunit
-
o ATP synthases suggested by double mutants of the a subunit. J. Biol. Chem. 1994, 269:30364-30369.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 30364-30369
-
-
Vik, S.B.1
Antonio, B.J.2
-
4
-
-
0030715561
-
ATP synthase: an electrochemical transducer with rotary mechanics
-
Junge W., Lill H., Engelbrecht S. ATP synthase: an electrochemical transducer with rotary mechanics. TIBS 1997, 22:420-423.
-
(1997)
TIBS
, vol.22
, pp. 420-423
-
-
Junge, W.1
Lill, H.2
Engelbrecht, S.3
-
5
-
-
0032576724
-
Energy transduction in ATP synthase
-
Elston T., Wang H.Y., Oster G. Energy transduction in ATP synthase. Nature 1998, 391:510-513.
-
(1998)
Nature
, vol.391
, pp. 510-513
-
-
Elston, T.1
Wang, H.Y.2
Oster, G.3
-
7
-
-
0029893335
-
Intersubunit rotation in active F-ATPase
-
Sabbert D., Engelbrecht S., Junge W. Intersubunit rotation in active F-ATPase. Nature 1996, 381:623-625.
-
(1996)
Nature
, vol.381
, pp. 623-625
-
-
Sabbert, D.1
Engelbrecht, S.2
Junge, W.3
-
8
-
-
0742270832
-
1-ATPase
-
1-ATPase. Nature 2004, 427:465-468.
-
(2004)
Nature
, vol.427
, pp. 465-468
-
-
Itoh, H.1
Takahashi, A.2
Adachi, K.3
Noji, H.4
Yasuda, R.5
Yoshida, M.6
Kinosita, K.7
-
10
-
-
33645796449
-
Catalytic and mechanical cycles in F-ATP synthase
-
Dimroth P., von Ballmoos C., Meier T. Catalytic and mechanical cycles in F-ATP synthase. EMBO Rep. 2006, 7:276-282.
-
(2006)
EMBO Rep.
, vol.7
, pp. 276-282
-
-
Dimroth, P.1
von Ballmoos, C.2
Meier, T.3
-
12
-
-
0034520923
-
The rotary mechanism of ATP synthase
-
Stock D., Gibbons C., Arechaga I., Leslie A.G.W., Walker J.E. The rotary mechanism of ATP synthase. Curr. Opin. Struct. Biol. 2000, 10:672-679.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 672-679
-
-
Stock, D.1
Gibbons, C.2
Arechaga, I.3
Leslie, A.G.W.4
Walker, J.E.5
-
13
-
-
0031008228
-
The ATP synthase-a splendid molecular machine
-
Boyer P.D. The ATP synthase-a splendid molecular machine. Annu. Rev. Biochem. 1997, 66:717-749.
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 717-749
-
-
Boyer, P.D.1
-
15
-
-
0012791770
-
-
Elsevier, Amsterdam, M. Florkin, E.H. Stotz (Eds.)
-
Mitchell P. Comprehensive Biochemistry 1967, vol. 22:167-197. Elsevier, Amsterdam. M. Florkin, E.H. Stotz (Eds.).
-
(1967)
Comprehensive Biochemistry
, vol.22
, pp. 167-197
-
-
Mitchell, P.1
-
19
-
-
43049131443
-
Evolutionary primacy of sodium bioenergetics
-
Mulkidjanian A.Y., Galperin M.Y., Makarova K.S., Wolf Y.I., Koonin E.V. Evolutionary primacy of sodium bioenergetics. Biol. Direct 2008, 3:13-32.
-
(2008)
Biol. Direct
, vol.3
, pp. 13-32
-
-
Mulkidjanian, A.Y.1
Galperin, M.Y.2
Makarova, K.S.3
Wolf, Y.I.4
Koonin, E.V.5
-
20
-
-
46349090280
-
The past and present of sodium energetics: may the sodium-motive force be with you
-
Mulkidjanian A.Y., Dibrov P., Galperin M.Y. The past and present of sodium energetics: may the sodium-motive force be with you. Biochim. Biophys. Acta 2008, 1777:985-992.
-
(2008)
Biochim. Biophys. Acta
, vol.1777
, pp. 985-992
-
-
Mulkidjanian, A.Y.1
Dibrov, P.2
Galperin, M.Y.3
-
23
-
-
70349828967
-
High-resolution structure of the rotor ring of a proton dependent ATP synthase
-
Pogoryelov D., Yildiz Ö., Faraldo-Gómez J.D., Meier T. High-resolution structure of the rotor ring of a proton dependent ATP synthase. Nat. Struct. Mol. Biol. 2009, 16:1068-1073.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1068-1073
-
-
Pogoryelov, D.1
Yildiz, Ö.2
Faraldo-Gómez, J.D.3
Meier, T.4
-
24
-
-
33750609826
-
Ion selectivity in potassium channels
-
Noskov S.Y., Roux B. Ion selectivity in potassium channels. Biophys. Chem. 2006, 124:279-291.
-
(2006)
Biophys. Chem.
, vol.124
, pp. 279-291
-
-
Noskov, S.Y.1
Roux, B.2
-
26
-
-
68949144740
-
Statistical determinants of selective ionic complexation: ions in solvent, transport proteins, and other hosts
-
Bostick D.L., Brooks C.L. Statistical determinants of selective ionic complexation: ions in solvent, transport proteins, and other hosts. Biophys. J. 2009, 96:4470-4492.
-
(2009)
Biophys. J.
, vol.96
, pp. 4470-4492
-
-
Bostick, D.L.1
Brooks, C.L.2
-
27
-
-
38049095537
-
+ selectivity in K channels and valinomycin: over-coordination versus cavity-size constraints
-
+ selectivity in K channels and valinomycin: over-coordination versus cavity-size constraints. J. Mol. Biol. 2008, 376:13-22.
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 13-22
-
-
Varma, S.1
Sabo, D.2
Rempe, S.B.3
-
28
-
-
73149113583
-
Ion selectivity from local configurations of ligands in solutions and ion channels
-
Asthagiri D., Dixit P.D., Merchant S., Paulaitis M.E., Pratt L.R., Rempe S.B., Varma S. Ion selectivity from local configurations of ligands in solutions and ion channels. Chem. Phys. Lett. 2010, 485:1-7.
-
(2010)
Chem. Phys. Lett.
, vol.485
, pp. 1-7
-
-
Asthagiri, D.1
Dixit, P.D.2
Merchant, S.3
Paulaitis, M.E.4
Pratt, L.R.5
Rempe, S.B.6
Varma, S.7
-
29
-
-
67649205728
-
Hydration number, topological control, and ion selectivity
-
Yu H.B., Noskov S.Y., Roux B. Hydration number, topological control, and ion selectivity. J. Phys. Chem. B 2009, 113:8725-8730.
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 8725-8730
-
-
Yu, H.B.1
Noskov, S.Y.2
Roux, B.3
-
30
-
-
28544453561
-
Principles of selective ion transport in channels and pumps
-
Gouaux E., MacKinnon R. Principles of selective ion transport in channels and pumps. Science 2005, 310:1461-1465.
-
(2005)
Science
, vol.310
, pp. 1461-1465
-
-
Gouaux, E.1
MacKinnon, R.2
-
33
-
-
0037227431
-
Evidence for structural integrity in the undecameric c-rings isolated from sodium ATP synthases
-
Meier T., Matthey U., von Ballmoos C., Vonck J., von Nidda T.K., Kühlbrandt W., Dimroth P. Evidence for structural integrity in the undecameric c-rings isolated from sodium ATP synthases. J. Mol. Biol. 2003, 325:389-397.
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 389-397
-
-
Meier, T.1
Matthey, U.2
von Ballmoos, C.3
Vonck, J.4
von Nidda, T.K.5
Kühlbrandt, W.6
Dimroth, P.7
-
34
-
-
35448959682
-
Two distinct proton binding sites in the ATP synthase family
-
von Ballmoos C., Dimroth P. Two distinct proton binding sites in the ATP synthase family. Biochemistry 2007, 46:11800-11809.
-
(2007)
Biochemistry
, vol.46
, pp. 11800-11809
-
-
von Ballmoos, C.1
Dimroth, P.2
-
35
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips J.C., Braun R., Wang W., Gumbart J., Tajkhorshid E., Villa E., Chipot C., Skeel R.D., Kale L., Schulten K. Scalable molecular dynamics with NAMD. J. Comput. Chem. 2005, 26:1781-1802.
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
36
-
-
33646446451
-
Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains
-
Kucerka N., Tristram-Nagle S., Nagle J.F. Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains. J. Mol. Biol. 2005, 208:193-202.
-
(2005)
J. Mol. Biol.
, vol.208
, pp. 193-202
-
-
Kucerka, N.1
Tristram-Nagle, S.2
Nagle, J.F.3
-
37
-
-
0036618993
-
Setting up and optimization of membrane protein simulations
-
Faraldo-Gómez J.D., Smith G.R., Sansom M.S. Setting up and optimization of membrane protein simulations. Eur. Biophys. J. 2002, 31:217-227.
-
(2002)
Eur. Biophys. J.
, vol.31
, pp. 217-227
-
-
Faraldo-Gómez, J.D.1
Smith, G.R.2
Sansom, M.S.3
-
39
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell A.D., Bashford D., Bellott M., Dunbrack R.L., Evanseck J.D., Field M.J., Fischer S., Gao J., Guo H., Ha S., Joseph-McCarthy D., Kuchnir L., Kuczera K., Lau F.T.K., Mattos C., Michnick S., Ngo T., Nguyen D.T., Prodhom B., Reiher W.E., Roux B., Schlenkrich M., Smith J.C., Stote R., Straub J., Watanabe M., Wiorkiewicz-Kuczera J., Yin D., Karplus M. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B 1998, 102:3586-3616.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-McCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
40
-
-
3142714765
-
Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
-
MacKerell A.D., Feig M., Brooks C.L. Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. J. Comput. Chem. 2004, 25:1400-1415.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1400-1415
-
-
MacKerell, A.D.1
Feig, M.2
Brooks, C.L.3
-
41
-
-
33947448822
-
The chemistry of carbodiimides
-
Khorana H.G. The chemistry of carbodiimides. Chem. Rev. 1953, 53:145-166.
-
(1953)
Chem. Rev.
, vol.53
, pp. 145-166
-
-
Khorana, H.G.1
-
42
-
-
2742613426
-
N, N'-Dicyclohexylcarbodiimide binds specfically to a single glutamyl residue of the proteolipid subunit of the mitochondrial adenosine-triphosphatases from Neurospora crassa and Saccharomyces cerevisae
-
Sebald W., Machleidt W., Wachter E. N, N'-Dicyclohexylcarbodiimide binds specfically to a single glutamyl residue of the proteolipid subunit of the mitochondrial adenosine-triphosphatases from Neurospora crassa and Saccharomyces cerevisae. Proc. Natl. Acad. Sci. U. S. A. 1980, 77:785-789.
-
(1980)
Proc. Natl. Acad. Sci. U. S. A.
, vol.77
, pp. 785-789
-
-
Sebald, W.1
Machleidt, W.2
Wachter, E.3
-
43
-
-
0027279864
-
o ATPase of Propionigenium modestum from the reaction with dicyclohexylcarbodiimide
-
o ATPase of Propionigenium modestum from the reaction with dicyclohexylcarbodiimide. J. Biol. Chem. 1993, 268:14557-14560.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 14557-14560
-
-
Kluge, C.1
Dimroth, P.2
-
44
-
-
51749114028
-
Probing the rotor subunit interface of the ATP synthase from Ilyobacter tartaricus
-
Pogoryelov D., Nikolaev Y., Schattner U., Pervushin K., Dimroth P., Meier T. Probing the rotor subunit interface of the ATP synthase from Ilyobacter tartaricus. FEBS J. 2008, 275:4850-4862.
-
(2008)
FEBS J.
, vol.275
, pp. 4850-4862
-
-
Pogoryelov, D.1
Nikolaev, Y.2
Schattner, U.3
Pervushin, K.4
Dimroth, P.5
Meier, T.6
-
45
-
-
40649098564
-
+ binding sites with two different mechanisms
-
+ binding sites with two different mechanisms. J. Mol. Biol. 2008, 377:804-818.
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 804-818
-
-
Noskov, S.Y.1
Roux, B.2
-
46
-
-
7244251461
-
Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands
-
Noskov S.Y., Berneche S., Roux B. Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands. Nature 2004, 431:830-834.
-
(2004)
Nature
, vol.431
, pp. 830-834
-
-
Noskov, S.Y.1
Berneche, S.2
Roux, B.3
-
47
-
-
0028921917
-
o-ATPase from Acetobacterium woodii-probing the site(s) involved in ion transport
-
o-ATPase from Acetobacterium woodii-probing the site(s) involved in ion transport. Biochim. Biophys. Acta 1995, 1229:96-102.
-
(1995)
Biochim. Biophys. Acta
, vol.1229
, pp. 96-102
-
-
Spruth, M.1
Reidlinger, J.2
Müller, V.3
-
50
-
-
2942675081
-
The proton-driven rotor of ATP synthase: ohmic conductance (10 fS), and absence of voltage gating
-
Feniouk B.A., Kozlova M.A., Knorre D.A., Cherepanov D.A., Mulkidjanian A.Y., Junge W. The proton-driven rotor of ATP synthase: ohmic conductance (10 fS), and absence of voltage gating. Biophys. J. 2004, 86:4094-4109.
-
(2004)
Biophys. J.
, vol.86
, pp. 4094-4109
-
-
Feniouk, B.A.1
Kozlova, M.A.2
Knorre, D.A.3
Cherepanov, D.A.4
Mulkidjanian, A.Y.5
Junge, W.6
-
54
-
-
0027052393
-
o ATPase from Propionigenium modestum - discovery of a membrane-potential dependent step
-
o ATPase from Propionigenium modestum - discovery of a membrane-potential dependent step. Biochemistry 1992, 31:12665-12672.
-
(1992)
Biochemistry
, vol.31
, pp. 12665-12672
-
-
Kluge, C.1
Dimroth, P.2
-
55
-
-
0024962378
-
The sodium-ion translocating adenosine-triphosphatase of Propionigenium modestum pumps protons at low sodium-ion concentrations
-
Laubinger W., Dimroth P. The sodium-ion translocating adenosine-triphosphatase of Propionigenium modestum pumps protons at low sodium-ion concentrations. Biochemistry 1989, 28:7194-7198.
-
(1989)
Biochemistry
, vol.28
, pp. 7194-7198
-
-
Laubinger, W.1
Dimroth, P.2
-
56
-
-
47249154306
-
+-transporting V-ATPase
-
+-transporting V-ATPase. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:8607-8612.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 8607-8612
-
-
Murata, T.1
Yamato, I.2
Kakinuma, Y.3
Shirouzu, M.4
Walker, J.E.5
Yokoyama, S.6
Iwata, S.7
-
57
-
-
0028800799
-
+-transporting ATP synthase by directed mutagenesis of subunit c
-
+-transporting ATP synthase by directed mutagenesis of subunit c. J. Biol. Chem. 1995, 270:87-93.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 87-93
-
-
Zhang, Y.1
Fillingame, R.H.2
|