A structured coalescent process for seasonally fluctuating populations

Evolution

Volumn 64, Issue 5, 2010, Pages 1395-1409

  Shpak, Max ^a   Wakeley, John ^b   Garrigan, Daniel ^c   Lewontin, Richard C ^b  

^a UNIVERSITY OF TEXAS AT EL PASO   (United States)

^b HARVARD UNIVERSITY   (United States)

^c UNIVERSITY OF ROCHESTER   (United States)

Author keywords

Coalescence; Drosophila; Heterozygosity; Metapopulations; Migration

Indexed keywords

ALLELE; COALESCENCE; FLY; GENE FLOW; GENETIC VARIATION; GROWING SEASON; HETEROZYGOSITY; METAPOPULATION; NUMERICAL METHOD; POPULATION SIZE; POPULATION STRUCTURE; REFUGIUM;

ANIMAL; ARTICLE; GENETIC VARIABILITY; SEASON;

ANIMALS; GENETIC VARIATION; SEASONS;

NEW ENGLAND; UNITED STATES;

EID: 77953797208     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2009.00891.x     Document Type: Article

References (30)

1. Band H T, Ives P T. Correlated changes in environmental and lethal frequency in a natural population of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 1961, 47:180-185.
2. Crow J F, Aoki K. Group selection for a polygenic behavioral trait: estimating the degree of population subdivision. Proc. Natl. Acad. Sci. USA 1984, 81:6073-6077.
3. Garrigan D, Lewontin R C, Wakeley J. Detecting natural selection from DNA sequence data. Mol. Biol. Evol. 2009, 10.1093/molbev/msp209, doi
4. Hey J. A multidimensional coalescent process applied to multiallelic selection models and migration models. Theor. Popul. Biol. 1991, 39:30-48.
5. Hudson R R. Gene genealogies and the coalescent process. Oxford Sury. Evol. Biol. 1991, 7:1-44.
6. Hudson R R. Island models and the coalescent process. Mol. Ecol. 1998, 7:413-418.
7. Ives P T. Genetical structure of American populations of Drosophila melanogaster. Genetics 1945, 30:167-196.
8. Ives P T. Genetic changes in American populations of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 1954, 40:87-92.
9. Ives P T. Further genetic studies of the South Amherst population of Drosophila melanogaster. Evolution 1970, 24:507-518.
10. Ives P T, Band H T. Continuing studies on the South Amherst Drosophila melanogaster natural population during the 1970's and 1980's. Evolution 1986, 40:1289-1302.
11. Kimura M. The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations. Genetics 1969, 61:893-903.
12. Kimura M, Crow J F. The number of alleles that can be maintained in a finite population. Genetics 1964, 49:725-738.
13. Latter B D H. The island model of population differentiation: a general solution. Genetics 1973, 73:147-157.
14. Li W-H. Distribution of nucleotide differences between two randomly chosen cistrons in a subdivided population: the finite island model. Theor. Popul. Biol. 1976, 10:303-308.
15. Maruyama T. Effective number of alleles in a subdivided population. Theor. Popul. Biol. 1970a, 1:273-306.
16. Maruyama T. On the fixation probability of mutant genes in a subdivided population. Genet. Res. 1970b, 15:221-225.
17. Möhle M. A convergence theorem for Markov chains arising in population genetics and the coalescent with selfing. Adv. Appl. Prob. 1998, 30:493-512.
18. Möhle M. Ancestral processes in population genetics: the coalescent. J. Theor. Biol. 2000, 204:629-638.
19. Nei M, Feldman M W. Identity of genes by descent within and between populations under mutation and migration pressure. Theor. Popul. Biol. 1972, 3:460-465.
20. Rottenstreich S, Hamilton M B, Miller J R. Dynamics of FST for the island model. Theor. Popul. Biol. 2007, 72:485-503.
21. Slatkin M. The average number of sites separating DNA sequences drawn from a subdivided population. Theor. Popul. Biol. 1987, 32:42-49.
22. Slatkin M. Inbreeding coefficients and coalescence times. Genet. Res. 1991, 58:167-175.
23. Takahata N, Nei M. Fst and Gst statistics in the finite island model. Genetics 1984, 107:501-504.
24. Wakeley J. Recent trends in population genetics. J. Hered. 2004, 95:397-405.
25. Wakeley J. Coalescent theory: an introduction. 2008, Roberts and Company, Greenwood Village, CO
26. Wakeley J, Aliacar N. Gene genealogies in a metapopulation. Genetics 2001, 159:893-905.
27. Wolfram S. The mathematica book. 1999, 4th ed., Wolfram Media/Cambridge Univ. Press, Cambridge, UK
28. Whitlock M C, Mccauley D E. Indirect measures of gene flow and migration. Heredity 1999, 82:117-125.
29. Wright S. Evolution in Mendelian populations. Genetics 1931, 16:97-159.
30. Wright S. The genetical structure of populations. Ann. Eugen. 1951, 15:323-354.