메뉴 건너뛰기




Volumn 76, Issue 12, 2010, Pages 3863-3868

Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing

Author keywords

[No Author keywords available]

Indexed keywords

AMPLICONS; COST SAVING; CRITICAL STEPS; EQUIMOLAR AMOUNT; GENETIC VARIATION; MANAGEMENT COSTS; MASSIVELY PARALLEL SEQUENCING; MICROBIAL COMMUNITIES; MICROBIAL ECOLOGY; MIXED SAMPLES; NORMALIZATION METHODS; NORMALIZATION PROCESS; QUANTITATIVE BINDING; RESEARCH QUESTIONS; SEQUENCE ACQUISITION; SEQUENCE DATA; SEQUENCE DIVERSITY; TEMPORAL AND SPATIAL VARIATION;

EID: 77953624440     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02585-09     Document Type: Article
Times cited : (64)

References (15)
  • 1
    • 67349209853 scopus 로고    scopus 로고
    • Next-generation DNA sequencing techniques
    • Ansorge, W. J. 2009. Next-generation DNA sequencing techniques. N. Biotechnol. 25:195-203.
    • (2009) N. Biotechnol. , vol.25 , pp. 195-203
    • Ansorge, W.J.1
  • 2
    • 0023526239 scopus 로고
    • Estimating the population size for capture-recapture data with unequal catchability
    • Chao, A. 1987. Estimating the population size for capture-recapture data with unequal catchability. Biometrics 43:783-791. (Pubitemid 19318293)
    • (1987) Biometrics , vol.43 , Issue.4 , pp. 783-791
    • Chao, A.1
  • 3
    • 0001463548 scopus 로고
    • Non-parametric estimation of the number of classes in a population
    • Chao, A. 1984. Non-parametric estimation of the number of classes in a population. Scand. J. Stat. 11:265-270.
    • (1984) Scand. J. Stat. , vol.11 , pp. 265-270
    • Chao, A.1
  • 6
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • DOI 10.1038/nmeth.1184, PII NMETH.1184
    • Hamady, M., J. J. Walker, J. K. Harris, N. J. Gold, and R. Knight. 2008. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat. Methods 5:235-237. (Pubitemid 351325646)
    • (2008) Nature Methods , vol.5 , Issue.3 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 8
    • 65349091290 scopus 로고    scopus 로고
    • Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure
    • Huber, J. A., H. G. Morrison, S. M. Huse, P. R. Neal, M. L. Sogin, and D. B. M. Welch. 2009. Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure. Environ. Microbiol. 11:1292-1302.
    • (2009) Environ. Microbiol. , vol.11 , pp. 1292-1302
    • Huber, J.A.1    Morrison, H.G.2    Huse, S.M.3    Neal, P.R.4    Sogin, M.L.5    Welch, D.B.M.6
  • 9
    • 54549106898 scopus 로고    scopus 로고
    • Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
    • Liu, Z., T. Z. DeSantis, G. L. Andersen, and R. Knight. 2008. Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res. 36:e120.
    • (2008) Nucleic Acids Res. , vol.36
    • Liu, Z.1    DeSantis, T.Z.2    Andersen, G.L.3    Knight, R.4
  • 10
    • 35549007148 scopus 로고    scopus 로고
    • Short pyrosequencing reads suffice for accurate microbial community analysis
    • DOI 10.1093/nar/gkm541
    • Liu, Z., C. Lozupone, M. Hamady, F. D. Bushman, and R. Knight. 2007. Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res. 35:e120. (Pubitemid 350018597)
    • (2007) Nucleic Acids Research , vol.35 , Issue.18
    • Liu, Z.1    Lozupone, C.2    Hamady, M.3    Bushman, F.D.4    Knight, R.5
  • 11
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • Nawrocki, E. P., D. L. Kolbe, and S. R. Eddy. 2009. Infernal 1.0: inference of RNA alignments. Bioinformatics 25:1335-1337.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 12
    • 77951265777 scopus 로고    scopus 로고
    • 2010. Novel microbial diversity retrieved by autonomous robotic exploration of the world's deepest vertical phreatic sinkhole
    • Sahl, J. W., N. Fairfield, J. K. Harris, D. Wettergreen, W. C. Stone, and J. R. Spear. 2010. Novel microbial diversity retrieved by autonomous robotic exploration of the world's deepest vertical phreatic sinkhole. Astrobiology 10:201-213.
    • Astrobiology , vol.10 , pp. 201-213
    • Sahl, J.W.1    Fairfield, N.2    Harris, J.K.3    Wettergreen, D.4    Stone, W.C.5    Spear, J.R.6
  • 14
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure, J., and H. Ji. 2008. Next-generation DNA sequencing. Nat. Biotechnol. 26:1135-1145.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.