'Rejected' vs. 'rejecting' transcriptomes in allogeneic challenged colonial urochordates

Molecular Immunology

Volumn 47, Issue 11-12, 2010, Pages 2083-2093

  Oren, Matan ^a,b   Paz, Guy ^a   Douek, Jacob ^a   Rosner, Amalia ^a   Fishelson, Zvi ^b   Goulet, Tamar L ^c   Henckel, Kolja ^d   Rinkevich, Baruch ^a  

^a NATIONAL INSTITUTE OF OCEANOGRAPHY   (Israel)

^b TEL AVIV UNIVERSITY   (Israel)

^c UNIVERSITY OF MISSISSIPPI   (United States)

^d BIELEFELD UNIVERSITY   (Germany)

Author keywords

Botryllus; Histocompatibility; Immune rejection; Innate immunity; Invertebrates; Microarray; Self destruction; Self non self recognition

Indexed keywords

TRANSCRIPTOME;

ALLOGENEIC REJECTION; ARTICLE; ASCIDIACEA; BIOINFORMATICS; BOTRYLLUS SCHLOSSERI; CELL MOTILITY; CELL STRUCTURE; CONTROLLED STUDY; GENE FUNCTION; GENETIC TRANSCRIPTION; GENOTYPE; HISTOCOMPATIBILITY; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; ORGANISM COLONY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN SYNTHESIS; STRESS; UROCHORDATA;

ANIMALS; GENE EXPRESSION PROFILING; IMMUNITY, INNATE; POLYMERASE CHAIN REACTION; UROCHORDATA;

ASCIDIA; ASCIDIACEA; BOTRYLLIDAE; BOTRYLLUS; BOTRYLLUS SCHLOSSERI; INVERTEBRATA;

EID: 77953619664     PISSN: 01615890     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molimm.2010.04.007     Document Type: Article

References (28)

1. Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., Harris M.A., Hill D.P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J.C., Richardson J.E., Ringwald M., Rubin G.M., Sherlock G. Gene ontology: tool for the unification of biology. Nat. Genet. 2000, 25:25-29.
2. Ballarin L., Cima F. Phenoloxidase and cytotoxicity in the compound ascidian Botryllus schlosseri. Dev. Comp. Immunol. 1998, 22:479-492.
3. Bancroft F.W. Variation and fusion of colonies in compound ascidians. Proc. Calif. Acad. Sci. Ser. 1903, 3:137-186.
4. Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B: Stat. Methodol. 1995, 57:289-300.
5. Buss L.W., Moore J.L., Green D.G. Autoreactivity and self tolerance in an invertebrate. Nature 1985, 313:400-402.
6. De Tomaso A.W., Nyholm S.V., Palmeri K.J., Ishizuka K.J., Ludington W.B., Mitchel K., Weissman I.L. Isolation and characterization of a protochordate histocompatibility locus. Nature 2005, 38:454-459.
7. Grosberg R.K. The evolution of allorecognition specificity in clonal invertebrates. Q. Rev. Biol. 1988, 63:277-412.
8. Hildemann W.H. Immunocompetence and allogeneic polymorphism among invertebrates. Transplantation 1979, 27:1-3.
9. Lauzon R.J., Ishizuka K.J., Weissman I.L. A cyclical, developmentally regulated death phenomenon in a colonial urochordate. Dev. Dyn. 1992, 194:71-83.
10. Nyholm S.V., Passegue E., Ludington W.B., Voskoboynic A., Mitchel K., Weissman I.L., De Tomaso A.W. Fester, a candidate allorecognition receptor from a primitive chordate. Immunity 2006, 25:163-173.
11. Oren M., Douek J., Fishelson Z., Rinkevich B. Identification of immune-relevant genes in histoincompatible rejecting colonies of the tunicate Botryllus schlosseri. Dev. Comp. Immunol. 2007, 31:889-902.
12. Oren M., Escande M.L., Paz G., Fishelson Z., Rinkevich B. Urochordate histoincompatible interactions activate vertebrate-like coagulation system components. PLoS ONE 2008, 3:e3123.
13. Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29:2002-2007.
14. Rinkevich B. Morphologically related allorecognition assays in botryllid ascidians. Techniques in Fish Immunology. 4. Immunology and Pathology of Aquatic Invertebrates 1995, 17-21. SOS Publications, Fair Haven. J.S. Stolen, T.C. Fletcher, S.A. Smith, J.T. Zelikoff, S.L. Kaattari, R.S. Anderson, K. Söderhäll, B.A. Weeks-Perkins (Eds.).
15. Rinkevich B., Porat R., Goren M. Allorecognition elements on a urochordate histocompatibility locus indicates unprecedented extensive polymorphism. Proc. R. Soc. Lond. B 1995, 259:319-324.
16. Rinkevich B., Weissman I.L. Retreat growth in the ascidian Botryllus schlosseri: a consequence of nonself recognition. Invertebrate Historecognition 1988, 93-109. Plenum Press, New York. R.K. Grosberg, R.K. Hedgecock, D.K. Nelson (Eds.).
17. Rinkevich B., Weissman I.L. Incidents of rejection and indifference in Fu/HC incompatible protochordate colonies. J. Exp. Zool. 1992, 263:105-111.
18. Rinkevich B., Shapira M. An improved diet for inland broodstock and the establishment of an inbred line form Botryllus schlosseri, a colonial sea squirt (Ascidiacea). Aquat. Living Resour. 1998, 11:163-171.
19. Rinkevich B., Tartakover S., Gershon H. The contribution of morula cells to allogeneic responses in the colonial urochordate, Botryllus schlosseri. Mar. Biol. 1998, 131:227-236.
20. Rinkevich B. Primitive immune systems: are your ways my ways?. Immunol. Rev. 2004, 198:25-35.
21. Sadd B.M., Siva-Jothy M.T. Self-harm caused by an insect's innate immunity. Proc. R. Soc. B 2006, 273:2571-2754.
22. Scofield V.L., Schlumpberger J.M., West L.A., Weissman I.L. Protochordate allorecognition is controlled by an MHC-like gene system. Nature 1982, 295:499-502.
23. Scofield V.L., Nagashima L.S. Morphology and genetics of rejection reactions between oozooids from the tunicate Botryllus schlosseri. Biol. Bull. 1983, 165:733-744.
24. Smyth G.K. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 2004, 3. Article 3.
25. Smyth G.K. LIMMA: linear models for microarray data. Bioinformatics and Computational Biology Solutions Using R and Bioconductor. Statistics for Biology and Health 2005, 397-420. Springer, New York, NY. R. Gentleman, V.J. Carey, W. Huber, R.A. Irizarry, S. Dudoit (Eds.).
26. Tanaka K. Allogeneic inhibition in a compound ascidican, Botryllus primigenus Oka. II. Cellular and humoral responses in " nonfusion" reaction. Cell Immunol. 1973, 7:427-443.
27. Taneda Y., Watanabe H. Studies on colony specificity in the compound ascidian, Botryllus primigenus Oka. I. initiation of " nonfusion" reaction with special reference to blood cells infiltration. Dev. Comp. Immunol. 1982, 6:43-52.
28. Weissman I.L., Saito Y., Rinkevich B. Allorecognition histocompatibility in a protochordate species: is the relationship to MHC semantic or structural?. Immunol. Rev. 1990, 113:227-241.