Diversity of Mycobacterium tuberculosis genotypes circulating in Ndola, Zambia

BMC Infectious Diseases

Volumn 10, Issue , 2010, Pages

  Mulenga, Chanda ^a,b   Shamputa, Isdore C ^a,b,e   Mwakazanga, David ^a   Kapata, Nathan ^c   Portaels, Françoise ^b   Rigouts, Leen ^b,d  

^a Tropical Diseases Research Centre Ndola   (Zambia)

^b INSTITUTE OF TROPICAL MEDICINE   (Belgium)

^c MINISTRY OF HEALTH   (Zambia)

^d UNIVERSITY OF ANTWERP   (Belgium)

^e NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADOLESCENT; ADULT; AGED; ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIAL TRANSMISSION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; FEMALE; GENOTYPE; HUMAN; INTERSPERSED REPEAT; LUNG TUBERCULOSIS; MALE; MOLECULAR EPIDEMIOLOGY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; SPECIES DIVERSITY; STRAIN DIFFERENCE; URBAN AREA; VARIABLE NUMBER OF TANDEM REPEAT; ZAMBIA; CLASSIFICATION; CLUSTER ANALYSIS; COHORT ANALYSIS; DNA FINGERPRINTING; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MIDDLE AGED; PROSPECTIVE STUDY; URBAN POPULATION;

BACTERIAL DNA;

ADOLESCENT; ADULT; AGED; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; COHORT STUDIES; DNA FINGERPRINTING; DNA, BACTERIAL; FEMALE; GENETIC VARIATION; GENOTYPE; HUMANS; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MYCOBACTERIUM TUBERCULOSIS; PROSPECTIVE STUDIES; TUBERCULOSIS, PULMONARY; URBAN POPULATION; YOUNG ADULT; ZAMBIA;

EID: 77953553853     PISSN: None     EISSN: 14712334     Source Type: Journal    
DOI: 10.1186/1471-2334-10-177     Document Type: Article

References (38)

1. World Health Organization Global Tuberculosis Control WHO Report. 2009, WHO/HTM/TB/2009.411, Geneva, Switzerland, WHO, World Health Organization.
2. Central Statistical Office (CSO), Ministry of Health (MOH), Tropical Diseases Research Centre (TDRC), University of Zambia (UNZA), and Macro International Inc Zambia Demographic and Health Survey 2007. 2009, Calverton, Maryland, USA: CSO and Macro International Inc, Central Statistical Office (CSO), Ministry of Health (MOH), Tropical Diseases Research Centre (TDRC), University of Zambia (UNZA), and Macro International Inc.
3. van Embden JD, Cave MD, Crawford JT, Dale JW, Eisenach KD, Gicquel B, Hermans P, Martin C, McAdam R, Shinnick TM, Small PM. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J Clin Microbiol 1993, 31(2):406-409. 262774, 8381814.
4. Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, Bunschoten A, Molhuizen H, Shaw R, Goyal M, van Embden J. Simultaneous detection and strain differentiation of Mycobacterium tuberculosisfor diagnosis and epidemiology. J Clin Microbiol 1997, 35(4):907-914. 229700, 9157152.
5. Frothingham R, Meeker-O'Connell WA. Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats. Microbiology 1998, 144(Pt 5):1189-1196. 10.1099/00221287-144-5-1189, 9611793.
6. Le Fleche P, Fabre M, Denoeud F, Koeck JL, Vergnaud G. High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. BMC Microbiol 2002, 2:37. 10.1186/1471-2180-2-37, 140014, 12456266.
7. Savine E, Warren WM, van der Spuy GD, Beyers N, van Helden PD, Locht C, Supply P. Stability of variable-number tandem repeats of mycobacterial interspersed repetitive units from 12 loci in serial isolates of Mycobacterium tuberculosis. J Clin Microbiol 2002, 40(12):4561-4566. 10.1128/JCM.40.12.4561-4566.2002, 154626, 12454152.
8. Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, Locht C. Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J Clin Microbiol 2001, 39(10):3563-3571. 10.1128/JCM.39.10.3563-3571.2001, 88389, 11574573.
9. Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbón MH, Bobadilla del Valle M, Fyfe J, García-García L, Rastogi N, Sola C, Zozio T, Guerrero MI, León CI, Crabtree J, Angiuoli S, Eisenach KD, Durmaz R, Joloba ML, Rendón A, Sifuentes-Osornio J, Ponce de León A, Cave MD, Fleischmann R, Whittam TS, Alland D. Global phylogeny of Mycobacterium tuberculosis based on a single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol 2006, 188(2):759-772. 10.1128/JB.188.2.759-772.2006, 1347298, 16385065.
10. Gutacker MM, Mathema B, Soini H, Shashkina E, Kreiswirth BN, Graviss EA, Musser JM. Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites. J Infect Dis 2006, 193(1):121-128. 10.1086/498574, 16323140.
11. de Jong BC, Antonio M, Awine T, Ogungbemi K, de Jong YP, Gagneux S, DeRiemer K, Zozio T, Rastogi N, Borgdorff M, Hill PC, Adegbola RA. Use of spoligotyping and large sequence polymorpisms to study the populations structure of Mycobacterium tuberculosis complex in a cohort study of consecutive smear-positive cases in The Gambia. J Clin Microbiol 2009, 47(4):994-1001. 10.1128/JCM.01216-08, 2668362, 19193842.
12. Flores L, Van T, Narayanan S, DeRiemer K, Kato-Maeda M, Gagneux S. Large sequence polymorphisms classify Mycobacterium tuberculosis strains with ancestral spoligotyping patterns. J Clin Microbiol 2007, 45(10):3393-3395. 10.1128/JCM.00828-07, 2045339, 17699643.
13. Gagneux S, DeRiemer K, Van T, Kato-Maeda M, de Jong BC, Narayanan S, Nicol M, Niemann S, Kremer K, Gutierrez MC, Hilty M, Hopewell PC, Small PM. Variable host-pathogen compatibility in Mycobacterium tuberculosis. Proc Natl Acad Sci USA 2006, 103(8):2869-2873. 10.1073/pnas.0511240103, 1413851, 16477032.
14. Reed MB, Pichler VK, McIntosh F, Mattia A, Fallow A, Masala S, Domenech P, Zwerling A, Thibert L, Menzies D, Schwartzman K, Behr MA. Major Mycobacterium tuberculosis lineages associate with patient country of origin. J Clin Microbiol 2009, 47(4):1119-28. 10.1128/JCM.02142-08, 2668307, 19213699.
15. Central Statistics Office Summary Report, Zambia 2000 Census of Population and Housing. 2003, Central Statistics Office, Lusaka, Zambia, Central Statistics Office.
16. Ministry of Health Tuberculosis and TB/HIV Manual. The National TB and Leprosy Control Programme Ministry of Health, Lusaka, Zambia, Third, Ministry of Health.
17. World Health Organization Treatment of tuberculosis: guidelines for national programmes. WHO/CDS/TB/2003.313 2003, World Health Organization, Geneva, Switzerland, 3, World Health Organization.
18. Petroff SA. A new and rapid method for the isolation and cultivation of tubercle bacilli directly form the sputum and feces. J Exp Med 1915, 21(1):38-42. 10.1084/jem.21.1.38, 2125265, 19867850.
19. Supply P, Mazars E, Lesjean S, Vincent V, Gicquel B, Locht C. Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol Microlbiol 2000, 36(3):762-771.
20. Allix-Béguec C, Harmsen D, Weniger T, Supply P, Niemann S. Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification Mycobacterium tuberculosis complex isolates. J Clin Microbiol 2008, 46(8):2692-2699. 10.1128/JCM.00540-08, 2519508, 18550737.
21. Shamputa IC, Rigouts L, Eyongeta LA, El Aila NA, van Deun A, Salim AH, Willery E, Locht C, Supply P, Portaels F. Genotypic and phenotypic heterogeneity among Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients. J Clin Microbiol 2004, 42(12):5528-5536. 10.1128/JCM.42.12.5528-5536.2004, 535260, 15583277.
22. Shamputa IC, Jugheli L, Sadradze N, Willery E, Portaels F, Supply P, Rigouts L. Mixed infection and clonal representativeness of a single sputum sample in tuberculosis patients from a penitentiary hospital in Georgia. Respir Res 2006, 17(7):99.
23. Hunter PR, Gaston MA. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 1988, 26(11):2465-2466. 266921, 3069867.
24. Chihota V, Apers L, Mungofa S, Kasongo W, Nyoni IM, Tembwe R, Mbulo G, Tembo M, Streicher EM, van der Spuy GD, Victor TC, van Helden P, Warren RM. Predominance of a single genotype of Mycobacteium tuberculosis in regions of Southern Africa. Int J Tuberc Lung Dis 2007, 11(3):311-318.
25. Easterbrook PJ, Gibson A, Murad S, Lamprecht D, Ives N, Ferguson A, Lowe O, Mason P, Ndudzo A, Taziwa A, Makombe R, Mbengeranwa L, Sola C, Rastogi N, Drobniewski F. High rates of clustering of strains causing tuberculosis in Harare, Zimbabwe: a molecular epidemiological study. J Clin Microbiol 2004, 42(10):4536-4544. 10.1128/JCM.42.10.4536-4544.2004, 522374, 15472306.
26. Glynn JR, Bauer J, de Boer AS, Borgdorff MW, Fine PEM, Godfrey-Faussett P, Vynnycky E. Interpreting DNA fingerprint clusters of Mycobacterium tuberculosis. Int J Tuberc Lung Dis 1999, 3(12):1055-1060.
27. Lockman S, Sheppard JD, Braden CR, Mwasekaga MJ, Woodley CL, Kenyon TA, Binkin NJ, Steinman M, Montsho F, Kesupile-Reed M, Hirschfeldt C, Notha M, Moeti T, Tappero JW. Molecular and conventional epidemiology of Mycobacterium tuberculosis in Botswana: a population-based prospective study of 301 pulmonary tuberculosis patients. J Clin Microbiol 2001, 39(3):1042-1047. 10.1128/JCM.39.3.1042-1047.2001, 87871, 11230425.
28. Lockman S, Sheppard JD, Mwasekaga M, Kenyon TA, Binkin NJ, Braden CR, Woodley CL, Rumisha DW, Tappero JW. DNA fingerprinting of a national sample of Mycobacterium tuberculosis isolates, Botswana, 1995-1996. Int J Tuberc Lung Dis 2000, 4(6):584-587.
29. Bruchfeld J, Aderaye G, Palme IB, Bjorvatn B, Ghebremichael S, Hoffner S, Lindquist L. Molecular epidemiology and drug resistance of Mycobacterium tuberculosis isolates from Ethiopian pulmonary tuberculosis patients with and without human immunodeficiency virus infection. J Clin Microbiol 2002, 40(5):1636-1643. 10.1128/JCM.40.5.1636-1643.2002, 130945, 11980933.
30. Affolabi D, Anyo G, Faïhun F, Sanoussi N, Shamputa IC, Rigouts L, Kestens L, Anagonou S, Portaels F. First molecular epidemiological study of tuberculosis in Benin. Int J Tuberc Lung Dis 2009, 13(3):317-322.
31. Crampin AC, Glynn JR, Traore H, Yates MD, Mwaungulu L, Mwenebabu M, Chaguluka SD, Floyd S, Drobniewski F, Fine PE. Tuberculosis transmission attributable to close contacts and HIV status, Malawi. Emerg Infect Dis 2006, 12(5):729-735.
32. Tostmann A, Kik SV, Kalisvaart NA, Sebek MM, Verver S, Boeree MJ, van Soolingen D. Tuberculosis transmission by patients with smear negative pulmonary tuberculosis in a large cohort in the Netherlands. Clin Infect Dis 2008, 47(9):1135-1142. 10.1086/591974, 18823268.
33. Hernandez-Garduno E, Cook V, Kunimoto D, Elwood RK, Black WA, FitzGerald JM. Transmission of tuberculosis from smear negative patients: a molecular epidemiology study. Thorax 2004, 59(4):286-290. 10.1136/thx.2003.011759, 1763818, 15047946.
34. Lawn SD, Edwards D, Wood R. Tuberculosis transmission from patients with smear negative pulmonary tuberculosis in sub-Saharan Africa. Clin Infect Dis 2009, 48(4):496-497. 10.1086/596550, 19586380.
35. Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rüsch-Gerdes S, Willery E, Savine E, de Haas P, van Deutekom H, Roring S, Bifani P, Kurepina N, Kreiswirth B, Sola C, Rastogi N, Vatin V, Gutierrez MC, Fauville M, Niemann S, Skuce R, Kremer K, Locht L, van Soolingen D. Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis. J Clin Microbiol 2006, 44(12):4498-4510. 10.1128/JCM.01392-06, 1698431, 17005759.
36. Stavrum R, Mphahlele M, Ovreås K, Muthivhi T, Fourie PB, Weyer K, Grewal HM. High diversity of Mycobacterium tuberculosis genotypes in South Africa and preponderance of mixed infections among ST53 isolates. J Clin Microbiol 2009, 47(6):1848-1856. 10.1128/JCM.02167-08, 2691085, 19386854.
37. Shamputa IC, Lee J, Allix-Béguec C, Cho E, Lee J, Rajan V, Lee EG, Min JH, Carroll MW, Goldfeder LC, Kim JH, Kang HS, Hwang S, Eum S, Park SK, Lee H, Supply P, Cho SN, Via LE, Barry CE. Genetic diversity of Mycobacterium tuberculosis isolates from a tertiary tuberculosis hospital in South Korea. J Clin Microbiol 2010, 48(2):387-394. 10.1128/JCM.02167-09, 20018816.
38. Warren RM, Victor TC, Streicher EM, Richardson M, Beyers N, Gey van Pittius NC, van Helden PD. Patients with active tuberculosis often have different strains in the same sputum specimen. Am J Respir Crit Care Med 2004, 169(5):610-614. 10.1164/rccm.200305-714OC, 14701710.