Cross-species amplification of 41 microsatellites in European cyprinids: A tool for evolutionary, population genetics and hybridization studies

BMC Research Notes

Volumn 3, Issue , 2010, Pages

  Dubut, Vincent ^a   Sinama, Melthide ^a   Martin, Jean François ^b   Meglécz, Emese ^a   Fernandez, Juliette ^a   Chappaz, Rémi ^a   Gilles, André ^a   Costedoat, Caroline ^a  

^a AIX MARSEILLE UNIVERSITY   (France)

^b MONTPELLIER SUPAGRO   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ABRAMIS BRAMA; ALBURNOIDES BIPUNCTATUS; ALBURNUS ALBURNUS; BLICCA BJOERKNA; CHONDROSTOMA NASUS; CHONDROSTOMA TOXOSTOMA; CYPRINIDAE; LEUCISCUS CEPHALUS; LEUCISCUS LEUCISCUS; LEUCISCUS SOUFFIA; NASUS; PACHYCHILON PICTUS; RUTILUS RUTILUS; SCARDINIUS ERYTHROPHTHALMUS; TELEOSTEI; TOXOSTOMA;

EID: 77953517130     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-3-135     Document Type: Article

References (30)

1. J Nelson, Fishes of the World New-York: John Wiley & Sons 3 1994
2. Novelties in hybrid zones: Crossroads between population genomic and ecological approaches. C Costedoat N Pech R Chappaz A Gilles, PLoS ONE 2007 2 357 10.1371/journal.pone.0000357 17406681
3. Cross-species amplification of 36 cyprinid microsatellite loci in Phoxinus phoxinus (L.) and Scardinius erythrophthalmus (L.). J Holmen LA Vøllestad KS Jakobsen CR Primmer, BMC Res Notes 2009 2 248 10.1186/1756-0500-2-248 20003440
4. P Keith J Allardi, Atlas des poissons d'eau douce de France Paris: Muséum National d'Histoire Naturelle 2001
5. Evolution of mosaic hybrid zone between invasive and endemic species of Cyprinidae through space and time. C Costedoat N Pech MD Salducci R Chappaz A Gilles, Biol J Linn Soc 2005 85 135 155 10.1111/j.1095-8312.2005.00478.x (Pubitemid 40802015)
6. Isolation and characterization of polymorphic microsatellite loci in the freshwater fishes Telestes souffia and Telestes muticellus (Teleostei: Cyprinidae). V Dubut JF Martin C Costedoat R Chappaz A Gilles, Mol Ecol Resour 2009 9 1001 1005 10.1111/j.1755-0998.2009.02539.x
7. Isolation and characterization of polymorphic microsatellite loci for the dace complex: Leuciscus leuciscus (Teleostei: Cyprinidae). V Dubut JF Martin A Gilles J Van Houdt R Chappaz C Costedoat, Mol Ecol Resour 2009 9 1179 1183 10.1111/j.1755-0998.2009.02594.x
8. MICROFAMILY (version 1): A computer program for detecting flanking region similarities among different microsatellite loci. E Meglécz, Mol Ecol Notes 2007 7 18 20 10.1111/j.1471-8286.2006.01537.x (Pubitemid 46046573)
9. Zebrafish genetic map with 2000 microsatellite markers. N Shimoda EW Knapik J Ziniti C Sim E Yamada S Kaplan D Jackson F de Sauvage H Jacob MC Fishman, Genomics 1999 58 219 232 10.1006/geno.1999.5824 10373319 (Pubitemid 29300304)
10. Microsatellite characterization in central stoneroller Campostoma anomalum (Pisces: Cyprinidae). P Dimsoski GP Toth MJ Bagley, Mol Ecol 2000 9 2187 2189 10.1046/j.1365-294X.2000.105318.x 11123646
11. Microsatellite loci for paternity analysis in the fathead minnow, Pimephales promelas (Teleostei: Cyprinidae). ML Bessert G Ortí Mol Ecol Notes 2003 3 532 534 10.1046/j.1471-8286.2003.00501.x (Pubitemid 37496747)
12. Isolation of microsatellite loci in the freshwater fish, the bitterling Rhodeus sericeus (Teleostei: Cyprinidae). DA Dawson TM Burland A Douglas SC Le Comber M Bradshaw, Mol Ecol Notes 2003 3 199 202 10.1046/j.1471-8286.2003.00395. x (Pubitemid 36720142)
13. Isolation and characterization of polymorphic microsatellite loci in the endangered Portuguese freshwater Squalius aradensis (Cyprinidae). N Mesquita C Cunha B Hänfling GR Carvalho L Zé-Zé R Tenreiro MM Coelho, Mol Ecol Notes 2003 3 572 574 10.1046/j.1471-8286.2003.00515.x (Pubitemid 37496760)
14. Microsatellite analysis of genetic population structure of the endangered cyprinid Anaecypris hispanica in Portugal: Implications for conservation. P Salgueiro G Carvalho MJ Collares-Pereira MM Coelho, Biol Conserv 2003 109 47 56 10.1016/S0006-3207(02)00132-5 (Pubitemid 35235448)
15. Characterization of microsatellite loci for five members of the minnow family Cyprinidae found in the Sacramento-San Joaquim Delta and its tributaries. MR Baerwald B May, Mol Ecol Notes 2004 4 385 390 10.1111/j.1471-8286.2004. 00661.x (Pubitemid 39147476)
16. Identification and characterization of microsatellite DNA markers developed in ide Leuciscus idus and Siberian roach Rutilus rutilus. A Barinova E Yadrenkina M Nakajima N Taniguchi, Mol Ecol Notes 2004 4 86 88 10.1046/j.1471-8286.2003.00577.x (Pubitemid 38261320)
17. Variable microsatellite markers amplify across divergent lineages of cyprinid fishes (subfamily Leuciscinae). TF Turner TE Dowling RE Broughton JR Gold, Conserv Genet 2004 5 279 281 10.1023/B:COGE.0000029998.11426.ab (Pubitemid 39066939)
18. Isolation and characterization of microsatellite loci from chub Leuciscus cephalus (Pisces: Cyprinidae). V Larno S Launey A Devaux J Laroche, Mol Ecol Notes 2005 5 752 754 10.1111/j.1471-8286.2005.01052.x (Pubitemid 43277957)
19. Microsatellites from the vairone Leuciscus souffia (Pisces: Cyprinidae) and their application to closely related species. FM Muenzel M Sanetra W Salzburger A Meyer, Mol Ecol Notes 2007 7 1048 1050 10.1111/j.1471-8286.2007. 01772.x (Pubitemid 350059182)
20. Chromosome studies of European cyprinid fishes: Interspecific homology of leuciscine cytotaxonomic marker-the largest subtelocentric chromosome pair as revealed by cross-species painting. P Rb M Rbov CS Pereira MJ Collares-Pereira Peliknov Chromosome Res 2008 16 863 873 10.1007/s10577-008-1245-3 18709543
21. GENEPOP '007: A complete reimplementation of the Genepop software for Windows and Linux. F Rousset, Mol Ecol Resour 2008 8 103 106 10.1111/j.1471-8286.2007.01931.x (Pubitemid 350231212)
22. MICRO-CHECKER: Software for identifying and correcting genotyping errors in microsatellite data. C van Oosterhout WF Hutchinson DPM Wills P Shipley, Mol Ecol Notes 2004 4 535 538 10.1111/j.1471-8286.2004.00684.x (Pubitemid 39147523)
23. Controlling the false discovery rate-a practical and powerful approach to multiple testing. Y Benjamini Y Hochberg, J Roy Stat Soc B Met 1995 57 289 300
24. Inference of population structure using multilocus genotype data. JK Pritchard M Stephens P Donnelly, Genetics 2000 155 945 959 10835412
25. Isolation by distance and sharp discontinuities in gene frequencies: Implications for the phylogeography of an alpine insect species, Carabus solieri. S Garnier P Alibert P Audiot B Prieur JY Rasplus, Mol Ecol 2004 13 1883 1897 10.1111/j.1365-294X.2004.02212.x 15189211
26. Cryptic population genetic structure: The number of inferred clusters depends on sample size. J Fogelqvist A Niittyvuopio J gren O Savolainen M Lascoux, Mol Ecol Resour 2010 10 314 323 10.1111/j.1755-0998.2009.02756.x
27. K Belkhir P Borsa L Chikhi N Raufaste F Bonhomme, GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations Montpellier: Laboratoire Génome Populations Interactions (UMR 5000, CNRS, Université de Montpellier II) 2004
28. A model-based method for identifying species hybrids using multilocus genetic data. EC Anderson EA Thompson, Genetics 2002 160 1217 1229 11901135
29. Efficiency of model-based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci. JP Vähä CR Primmer, Mol Ecol 2006 15 63 72 10.1111/j.1365-294X.2005.02773.x 16367830
30. Trade-off between morphological convergence and opportunistic diet behavior in fish hybrid zone. E Corse C Costedoat N Pech R Chappaz J Grey A Gilles, Front Zool 2009 6 26 10.1186/1742-9994-6-26 19860907