Systematics of Catenulifera (anamorphic Hyaloscyphaceae) with an assessment of the phylogenetic position of Phialophora hyalina

Fungal Biology

Volumn 114, Issue 5-6, 2010, Pages 396-409

  Bogale, Mesfin ^a   Orr, Mary Jane ^a   O'Hara, Matthew J ^a   Untereiner, Wendy A ^a  

^a BRANDON UNIVERSITY   (Canada)

Author keywords

Ascomycetes; Fluorescence; Hyaloscyphaceae; Phialide; Taxonomy

Indexed keywords

FUNGAL DNA; FUNGAL PROTEIN; RIBOSOMAL SPACER DNA; TUBULIN;

EVOLUTIONARY BIOLOGY; FLUORESCENCE; FUNGUS; PHYLOGENETICS; PHYLOGENY; TAXONOMY; ULTRAVIOLET RADIATION;

ARTICLE; ASCOMYCETES; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PLANT;

ASCOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; FUNGAL PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANTS; TUBULIN;

ASCOMYCOTA; CISTELLA; HELOTIALES; HYALINA (ASCOMYCETE); HYALOSCYPHACEAE; HYPHOMYCETES; PHIALOPHORA; SCOPULARIOPSIS;

EID: 77953495704     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2010.02.006     Document Type: Article

References (49)

1. Abbas H.K., Shier W.T., Horn B.W., Weaver M.A. Cultural methods for aflatoxin detection. Journal of Toxicology Toxin Reviews 2004, 23:295-315.
2. Asawanoda P., Taylor R.C. Wood's light in dermatology. International Journal of Dermatology 1999, 38:801-807.
3. Baral H.O. Beiträge zur Taxonomie der Discomyceten III. Zeitschrift für Mykologie 1993, 59:3-22.
4. Cotty P.J. Simple fluorescence method for rapid estimation of aflatoxin levels in a solid culture medium. Applied and Environmental Biology 1988, 54:274-276.
5. Farris J.S., Kfillersjo M., Kluge A.G., Bult C. Testing significance of incongruence. Cladistics 1995, 10:315-319.
6. Gams W. Phialophora and some similar morphologically little-differentiated anamorphs of divergent ascomycetes. Studies in Mycology 2000, 45:187-199.
7. Gams W., van der Aa H.A., van der Plaats-Niterink A.J., Samson R.A., Stalpers J.A. CBS Course in Mycology 1987, Centraalbureau voor Schimmelcultures, Baarn. 3rd edn.
8. Gams W., Holubová-Jechová V. Chloridium and some other dematiaceous hyphomycetes growing on decaying wood. Studies in Mycology 1976, 13:1-99.
9. Geiser D.M., Frisvad J.C., Taylor J.W. Evolutionary relationships in Aspergillus section Fumigati inferred from partial β-tubulin and hydrophobin DNA sequences. Mycologia 1998, 90:831-845.
10. Georgiev O.I., Nikolaev N., Hadjilov A.A., Skryabin K.G., Zakharyev V.M., Bayev A.A. The structure of the yeast ribosomal RNA genes. 4. Complete sequence of the 25S rRNA gene from Saccharomyces cerevisiae. Nucleic Acids Research 1981, 9:6953-6958.
11. Glass N.L., Donaldson G.C. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 1995, 61:1323-1330.
12. Grünig C.R., Queloz V., Duo A., Sieber T.N. Phylogeny of Phaeomollisia piceae gen. sp. nov.: a dark, septate, conifer-needle endophyte and its relationships to Phialocephala and Acephala. Mycological Research 2009, 113:207-221.
13. Hara S., Fennell D.I., Hesseltine D.W. Aflatoxin-producing strains of Aspergillus flavus detected by fluorescence of agar medium under ultraviolet light. Applied Microbiology 1974, 27:1118-1123.
14. Helfer W. Pilze auf Pilzfruchtkörpern. Untersuchungen zur Ökologie, Systematik und Chemie. Libri Botanici 1991, 1:1-157.
15. Hosoya T. Hyaloscyphaceae in Japan (6): the genus Hyphodiscus in Japan and its anamorph Catenulifera gen. nov. Mycoscience 2002, 43:47-57.
16. Huelsenbeck J.P., Bull J.J., Cunningham C.W. Combining data in phylogenetic analysis. Trends in Ecology & Evolution 1996, 11:152-158.
17. Huhtinen S. A monograph of Hyaloscypha and allied genera. Karstenia 1989, 29:45-252.
18. Jacobs K., Wingfield M.J., Jacobs A., Wingfield B.D. A taxonomic re-evaluation of Phialocephala phycomyces. Canadian Journal of Botany 2001, 79:110-117.
19. Katoh K., Misawa K., Kuma K., Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 2002, 30:3059-3066.
20. Kornerup A., Wanscher J.H. Metheun Handbook of Color 1978, Fletcher and Son Ltd., London. 3rd edn.
21. Kuhls K., Lieckfeldt E., Samuels G.J., Meyer W., Kubicek C.P., Börner T. Revision of Trichoderma sect. Longibrachiatum including related teleomorphs based on analysis of ribosomal DNA internal transcribed spacer sequences. Mycologia 1997, 89:442-460.
22. Lee S.B., Taylor J.W. Isolation of DNA from fungal mycelium and single spores. PCR Protocols: a guide to methods and applications 1990, 282-287. Academic Press, San Diego. M.A. Innis, D.H. Gelfand, J.J. Snisky, T.J. White (Eds.).
23. Lumley T.C., Gignac L.D., Currah R.C. Microfungus communities of white spruce and trembling aspen logs at different stages of decay in disturbed and undisturbed sites in the boreal mixed wood region of Alberta. Canadian Journal of Botany 2001, 79:76-92.
24. Lutzoni F., Kauff F., Cox C.J., McLaughlin D., Celio G., Dentinger B., Padamsee M., Hibbett D., James T.Y., Baloch E., Grube M., Reeb V., Hofstetter V., Schoch C., Arnold A.E., Miadlikowska J., Spatafora J., Johnson D., Hambleton S., Crockett M., Shoemaker R., Sung G.-H., Lücking R., Lumbsch T., O'Donnell K., Binder M., Diederich P., Ertz D., Gueidan C., Hansen K., Harris R.C., Hosaka K., Lim Y.-W., Matheny B., Nishida H., Pfister D., Rogers J., Rossman A., Schmitt I., Sipman H., Stone J., Sugiyama J., Yahr R., Vilgalys R. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany 2004, 91:1446-1480.
25. Malloch D. Moulds: their isolation, cultivation and identification 1981, University of Toronto Press, Toronto.
26. Mangenot F. Recherches méthodiques sur les champignons de certain bois en décomposition. Revue Générale de Botanique 1952, 59:439-471.
27. Möller C., Dreyfuss M.M. Microfungi from Antarctic lichens, mosses and vascular plants. Mycologia 1996, 88:922-933.
28. O'Donnell K., Cigelnik E. Two divergent intra-genomic ITS2 types within a monophyletic lineages of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 1997, 7:103-116.
29. Posada D. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 2008, 25:1253-1256.
30. Rambaut A. Se-Al: sequence alignment editor Available at:. http://iubio.bio.indiana.edu/soft/iubionew/molbio/dna/analysis/Pist/main.html.
31. Raschle P. Neufunde and Neukombinationen von Hyaloscyphaceae Nannfeldt (Helotiales). Nova Hedwigia 1978, 30:653-672.
32. Rehner S.A., Samuels G.S. Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycological Research 1994, 98:625-634.
33. Rippon J.W. Medical Mycology: the pathogenic fungi and the pathogenic actinomycetes 1988, W.B. Saunders Co., Philadelphia. 3rd edn.
34. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
35. Schoch C.L., Kohlmeyer J., Volkmann-Kohlmeyer B., Tsui C.K.M., Spatafora J.W. The halotolerant fungus Glomerobolus gelineus is a member of the Ostrapales. Mycological Research 2006, 110:257-263.
36. Spatafora J.W., Sung G.H., Johnson D., Hesse C., O'Rourke B., Serdani M., Spotts R., Lutzoni F., Hofstetter V., Miadlikowska J., Reeb V., Gueidan C., Fraker E., Lumbsch T., Lücking R., Schmitt I., Hosaka K., Aptroot A., Roux C., Miller A.N., Geiser D.M., Hafellner J., Hestmark G., Arnold A.E., Büdel B., Rauhut A., Hewitt D., Untereiner W.A., Cole M.S., Scheidegger C., Schultz M., Sipman H., Schoch C.L. A five-gene phylogeny of Pezizomycotina. Mycologia 2006, 98:1018-1028.
37. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4 2003, Sinauer Associates, Sunderland, MA.
38. Thompson J.D., Higgins D.G., Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22:4673-4680.
39. Tuite J. Plant Pathological Methods 1969, Burgess Publ. Co., Minneapolis.
40. Tamura K., Nei M. Estimation the number of nucleotide substitutions in the control regions of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 1993, 10:512-526.
41. Untereiner W.A., Naveau F.A. Molecular systematics of the Herpotrichiellaceae with an assessment of the phylogenetic position of Exophiala dermatitidis and Phialophora americana. Mycologia 1999, 91:67-83.
42. Untereiner W.A., Naveau F.A., Bachewich J., Angus A. Evolutionary relationships of Hyphodiscus hymeniophilus (anamorph Catenulifera rhodogena) inferred from β-tubulin and nuclear ribosomal DNA sequences. Canadian Journal of Botany 2006, 84:243-253.
43. Untereiner W.A., Straus N., Malloch D. A molecular-morphotaxonomic approach to the systematics of the Herpotrichiellaceae and allied black yeasts. Mycological Research 1995, 99:897-913.
44. Vilgalys R., Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 1990, 172:4238-4246.
45. Wang Z., Binder M., Hibbett D.S. Life history and systematics of the aquatic discomycete Mitrula (Helotiales, Ascomycota) based on cultural, morphological and molecular studies. American Journal of Botany 2005, 92:1565-1574.
46. Wang Z., Binder M., Schoch C.L., Johnston P.R., Spatafora J.W., Hibbett D. Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny. Molecular Phylogenetics and Evolution 2006, 41:295-312.
47. Wang Z., Johnston P.R., Takamatsu S., Spatafora J.W., Hibbett D. Toward a phylogenetic classification of the Leotiomycetes based on rDNA data. Mycologia 2006, 98:1065-1075.
48. White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: a guide to methods and applications 1990, 315-322. Academic Press, San Diego. M.A. Innis, D.H. Gelfand, J.J. Snisky, T.J. White (Eds.).
49. Zhuang W.-Y. Notes on Lachnellula theiodea. Mycotaxon 1988, 31:411-416.