Timing, coordination, and rhythm: Acrobatics at the DNA replication fork

Journal of Biological Chemistry

Volumn 285, Issue 25, 2010, Pages 18979-18983

  Hamdan, Samir M ^a,b   Van Oijen, Antoine M ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Saudi Arabia)

Author keywords

[No Author keywords available]

Indexed keywords

CURRENT MODELS; DIRECT OBSERVATION; DNA POLYMERASE; DNA REPLICATION FORKS; DNA REPLICATIONS; DYNAMIC NATURE; ENZYMATIC ACTIVITIES; LAGGING-STRAND; LOOP FORMATION; OKAZAKI FRAGMENTS; PROKARYOTIC SYSTEM; REPLICATION FORK; SHORT-INTERVAL; SINGLE-MOLECULE TECHNIQUE;

COORDINATION REACTIONS; DNA; GENES; TIME MEASUREMENT;

POLYMERS;

DNA POLYMERASE; REPLISOME;

BACTERIOPHAGE T7; DNA DENATURATION; DNA REPLICATION; DNA REPLICATION TIMING; DNA STRUCTURE; DNA SYNTHESIS; ELECTRON MICROSCOPY; ENZYME ACTIVITY; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; PROTEIN PROTEIN INTERACTION; SHORT SURVEY; SIGNAL TRANSDUCTION;

BACTERIOPHAGE T7; BIOCHEMISTRY; DNA; DNA PRIMASE; DNA REPLICATION; DNA-DIRECTED DNA POLYMERASE; ENZYMES; ESCHERICHIA COLI; MICROSCOPY, ELECTRON; NUCLEIC ACIDS; PROTEINS; RNA; THIOREDOXINS;

PROKARYOTA;

EID: 77953489802     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.R109.022939     Document Type: Short Survey

References (44)

1. Benkovic, S. J., Valentine, A. M., and Salinas, F. (2001) Annu. Rev. Biochem. 70, 181-208
2. Johnson, A., and O'Donnell, M. (2005) Annu. Rev. Biochem. 74, 283-315
3. Hamdan, S. M., and Richardson, C. C. (2009) Annu. Rev. Biochem. 78, 205-243
4. Ogawa, T., and Okazaki, T. (1980) Annu. Rev. Biochem. 49, 421-457
5. Tabor, S., Huber, H. E., and Richardson, C. C. (1987) J. Biol. Chem. 262, 16212-16223
6. Lee, J. B., Hite, R. K., Hamdan, S. M., Xie, X. S., Richardson, C. C., and van Oijen, A. M. (2006) Nature 439, 621-624
7. Wuite, G. J., Smith, S. B., Young, M., Keller, D., and Bustamante, C. (2000) Nature 404, 103-106
8. Hamdan, S. M., Johnson, D. E., Tanner, N. A., Lee, J. B., Qimron, U., Tabor, S., van Oijen, A. M., and Richardson, C. C. (2007) Mol. Cell 27, 539-549
9. Stano, N. M., Jeong, Y. J., Donmez, I., Tummalapalli, P., Levin, M. K., and Patel, S. S. (2005) Nature 435, 370-373
10. Hamdan, S. M., Marintcheva, B., Cook, T., Lee, S. J., Tabor, S., and Richardson, C. C. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 5096-5101
11. Kato, M., Ito, T., Wagner, G., Richardson, C. C., and Ellenberger, T. (2003) Mol. Cell 11, 1349-1360
12. He, Z. G., Rezende, L. F., Willcox, S., Griffith, J. D., and Richardson, C. C. (2003) J. Biol. Chem. 278, 29538-29545
13. He, Z. G., and Richardson, C. C. (2004) J. Biol. Chem. 279, 22190-22197
14. Kadyrov, F. A., and Drake, J. W. (2001) J. Biol. Chem. 276, 29559-29566
15. Debyser, Z., Tabor, S., and Richardson, C. C. (1994) Cell 77, 157-166
16. Kim, S., Dallmann, H. G., McHenry, C. S., and Marians, K. J. (1996) J. Biol. Chem. 271, 21406-21412
17. Alberts, B. M., Barry, J., Bedinger, P., Formosa, T., Jongeneel, C. V., and Kreuzer, K. N. (1983) Cold Spring Harbor Symp. Quant. Biol. 47, 655-668
18. Frick, D. N., and Richardson, C. C. (2001) Annu. Rev. Biochem. 70, 39-80
19. Lee, J., Chastain, P. D., 2nd, Kusakabe, T., Griffith, J. D., and Richardson, C. C. (1998) Mol. Cell 1, 1001-1010
20. Salinas, F., and Benkovic, S. J. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 7196-7201
21. Yang, J., Nelson, S. W., and Benkovic, S. J. (2006) Mol. Cell 21, 153-164
22. Lee, J., Chastain, P. D., 2nd, Griffith, J. D., and Richardson, C. C. (2002) J. Mol. Biol. 316, 19-34
23. Li, X., and Marians, K. J. (2000) J. Biol. Chem. 275, 34757-34765
24. Kusakabe, T., and Richardson, C. C. (1997) J. Biol. Chem. 272, 12446-12453
25. Tougu, K., and Marians, K. J. (1996) J. Biol. Chem. 271, 21398-21405
26. López de Saro, F. J., Georgescu, R. E., and O'Donnell, M. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 14689-14694
27. Carver, T. E., Jr., Sexton, D. J., and Benkovic, S. J. (1997) Biochemistry 36, 14409-14417
28. Georgescu, R. E., Kurth, I., Yao, N. Y., Stewart, J., Yurieva, O., and O'Donnell, M. (2009) EMBO J. 28, 2981-2991
29. Hacker, K. J., and Alberts, B. M. (1994) J. Biol. Chem. 269, 24221-24228
30. Chastain, P. D., 2nd, Makhov, A. M., Nossal, N. G., and Griffith, J. (2003) J. Biol. Chem. 278, 21276-21285
31. Park, K., Debyser, Z., Tabor, S., Richardson, C. C., and Griffith, J. D. (1998) J. Biol. Chem. 273, 5260-5270
32. Chastain, P. D., 2nd, Makhov, A. M., Nossal, N. G., and Griffith, J. D. (2000) Mol. Cell 6, 803-814
33. Nossal, N. G., Makhov, A. M., Chastain, P. D., 2nd, Jones, C. E., and Griffith, J. D. (2007) J. Biol. Chem. 282, 1098-1108
34. McInerney, P., Johnson, A., Katz, F., and O'Donnell, M. (2007) Mol. Cell 27, 527-538
35. Johnson, D. E., Takahashi, M., Hamdan, S. M., Lee, S. J., and Richardson, C. C. (2007) Proc. Natl. Acad. Sci. U.S.A. 104, 5312-5317
36. Yang, J., Zhuang, Z., Roccasecca, R. M., Trakselis, M. A., and Benkovic, S. J. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 8289-8294
37. Single-molecule Themed Volume (2008) Annu. Rev. Biochem. 77, 45-228
38. Hamdan, S. M., Loparo, J. J., Takahashi, M., Richardson, C. C., and van Oijen, A. M. (2009) Nature 457, 336-339
39. Frick, D. N., Kumar, S., and Richardson, C. C. (1999) J. Biol. Chem. 274, 35899-35907
40. Kusakabe, T., and Richardson, C. C. (1997) J. Biol. Chem. 272, 5943-5951
41. Pandey, M., Syed, S., Donmez, I., Patel, G., Ha, T., and Patel, S. S. (2009) Nature 462, 940-943
42. Manosas, M., Spiering, M. M., Zhuang, Z., Benkovic, S. J., and Croquette, V. (2009) Nat. Chem. Biol. 5, 904-912
43. Tanner, N. A., Loparo, J. J., Hamdan, S. M., Jergic, S., Dixon, N. E., and van Oijen, A. M. (2009) Nucleic Acids Res. 37, e27
44. Qimron, U., Lee, S. J., Hamdan, S. M., and Richardson, C. C. (2006) EMBO J. 25, 2199-2208