Transcriptomics in ecotoxicology

Analytical and Bioanalytical Chemistry

Volumn 397, Issue 3, 2010, Pages 917-923

  Schirmer, Kristin ^a,b   Fischer, Beat B ^a   Madureira, Danielle J ^a,b   Pillai, Smitha ^a  

^a SWISS FEDERAL INSTITUTE OF AQUATIC SCIENCE AND TECHNOLOGY   (Switzerland)

^b ETH ZURICH   (Switzerland)

Author keywords

DNA microarrays; Ecotoxicology; Mode of action; Phenotype anchoring; Risk assessment; Sequencing

Indexed keywords

ANALYTICAL TOOL; BUILDING BLOCKES; DNA MICRO-ARRAY; ECO-TOXICOLOGY; EXTERNAL ENVIRONMENTS; GENE EXPRESSION PROFILING; HIGH-THROUGHPUT ANALYSIS; HIGH-THROUGHPUT SCREENING; MESSENGER RNAS (MRNA); MODE OF ACTION; RNA MOLECULES; TRANSCRIPTOMES; TRANSCRIPTOMICS;

AMINO ACIDS; BIOASSAY; BIOCHIPS; BIOLOGY; DNA; ECOLOGY; GENE ENCODING; GENE EXPRESSION; ORGANIC ACIDS; RISK MANAGEMENT; RNA;

RISK ASSESSMENT;

ANIMAL; ARTICLE; DNA MICROARRAY; ECOTOXICOLOGY; GENE EXPRESSION PROFILING; HUMAN; METHODOLOGY;

ANIMALS; ECOTOXICOLOGY; GENE EXPRESSION PROFILING; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 77953478931     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-010-3662-3     Document Type: Article

References (31)

1. Eggen RIL, Behra R, Burkhardt-Holm P, Escher BI, Schweigert N (2004) Environ Sci Technol 38:58A-64A
2. Nuwaysir EF, Bittner M, Trent J, Barrett JC, Afshari CA (1999) Mol Carcinog 24:153-159
3. Southern EM (2000) Trends Biochem Sci 25:585-588
4. Lettieri T (2006) Environ Health Perspect 114:4-9
5. Schena M, Shalon D, Davis RW, Brown PO (1995) Science 270 (5235):467-470
6. Kassahn KS (2008) J Fish Biol 72:2407-2434
7. Vuylsteke M, Peleman JD, van Eijk MJ (2007) Natl Protoc 2:1399-1413
8. Breyne P, Dreesen R, Cannoot B, Rombaut D, Vandepoele K, Rombauts S, Vanderhaeghen R, Inze D, Zabeau M (2003) Mol Genet Genomics 269:173-179
9. Muller LA, Craciun AR, Ruytinx J, Lambaerts M, Verbruggen N, Vangronsveld J, Colpaert JV (2007) Mycorrhiza 17:571-580
10. Fusco N, Micheletto L, Dal Corso G, Borgato L, Furini A (2005) J Exp Bot 56:3017-3027
11. Velculescu VE, Zhang L, Vogelstein B, Kinzler KW (1995) Science 270(5235):484-487
12. Griffitt RJ, Greig TW, Chandler GT, Quattro JM (2007) Environ Toxicol Chem 26:2413-2419
13. Brenner S, Johnson M, Bridgham J, Golda G, Lloyd DH, Johnson D, Luo S, McCurdy S, Foy M, Ewan M, Roth R, George D, Eletr S, Albrecht G, Vermaas E, Williams SR, Moon K, Burcham T, Pallas M, DuBridge RB, Kirchner J, Fearon K, Mao J, Corcoran K (2000) Nat Biotechnol 18:630-634
14. Mortazavi A, Williams BA, Mccue K, Schaeffer L, Wold B (2008) Nat Methods 5:621-628
15. Mardis ER (2008) Annu Rev Genomics Hum Genet 9:387-402
16. Bellin D, Ferrarini A, Chimento A, Kaiser O, Levenkova N, Bouffard P, Delledonne M (2009) BMC Genomics. doi:10.1186/1471-2164-10-555
17. Pariset L, Chillemi G, Bongiorni S, Spica VR, Volentini A (2009) New Biotech 25:272-279
18. Garcia-Reyero N, Griffitt RJ, Liu L, Kroll KJ, Farmerie WG, Barber DS, Denslow ND (2008) J Fish Biol 72:2354-2376
19. Marguerat S, Bähler J (2010) Cell Mol Life Sci 67:569-579
20. Yang L, Kemadjou JR, Zinsmeister C, Bauer M, Legradi J, Muller F, Pankratz M, Jakel J, Strahle U (2007) Genome Biol 8:R227
21. Van Aggelen G, Ankley GT, Baldwin WS, Bearden DW, Benson WH, Chipman JK, Collette TW, Craft JA, Denslow ND, Embry MR, Falciani F, George SG, Helbing CC, Hoekstra PF, Iguchi T, Kagami Y, Katsiadaki I, Kille P, Liu L, Lord PG, McIntyre T, O'Neill A, Osachoff H, Perkins EJ, Santos EM, Skirrow RC, Snape JR, Tyler CR, Versteeg D, Viant MR, Volz DC, Williams TD, Yu L (2010) Environ Health Perspect 118:1-5
22. Hering JG (2009) Environ Chem 6:290-293
23. Frias-Lopez J, Shi Y, Tyson GW, Coleman ML, Schuster SC, Chisholm SW, Delong EF (2008) Proc Natl Acad Sci USA 105:3805-3810
24. Gilbert JA, Field D, Huang Y, Edwards R, Li W, Gilna P, Joint I (2008) PLoS ONE. doi:10.1371/journal.pone.0003042
25. Voelker D, Vess C, Tillmann M, Nagel R, Otto GW, Geisler R, Schirmer K, Scholz S (2007) Aquat Toxicol 81:355-364
26. Poynton HC, Varshavsky JR, Chang B, Cavigiolio G, Chan S, Holman PS, Loguinov AV, Bauer DJ, Komachi K, Theil EC, Perkins EJ, Hughes O, Vulpe CD (2007) Environ Sci Technol 41:1044-1050
27. Connon R, Hooper HL, Sibly RM, Lim FL, Heckmann LH, Moore DJ, Watanabe H, Soetaert A, Cook K, Maund SJ, Hutchinson TH, Moggs J, De Coen W, Iguchi T, Callaghan A (2008) Environ Sci Technol 42:2181-2188
28. Heckmann LH, Sibly RM, Connon R, Hooper HL, Hutchinson TH, Maund SJ, Hill CJ, Bouetard A, Callaghan A (2008) Genome Biol. doi:10.1186/gb-2008-9-2-r40 (Pubitemid 351943989)
29. Roh JY, Sim SJ, Yi J, Park K, Chung KH, Ryu DY, Choi J (2009) Environ Sci Technol 43:3933-3940
30. Bundy JG, Sidhu JK, Rana F, Spurgeon DJ, Svendsen C, Wren JF, Sturzenbaum SR, Morgan AJ, Kille P (2008) BMC Biol. doi:10.1186/1741-7007-6-25 (Pubitemid 351850957)
31. Villeneuve DL, Larkin P, Knoebl I, Miracle AL, Kahl MD, Jensen KM, Makynen EA, Durhan EJ, Carter BJ, Denslow ND, Ankley GT (2007) Environ Sci Technol 41:321-330