-
1
-
-
34548408283
-
-
Awan, A., Bari, H., Yan, F., Moksong, S., Yang, S., Chowdhury, S., Cui, Q., Yu, Z., Purisima, E.O. and Wang, E. 2007. Regulatory network motifs and hatspots of cancer genes in a mammalian cellular signalling network. IET Syst. Biol., 1(5):292-7.
-
Awan, A., Bari, H., Yan, F., Moksong, S., Yang, S., Chowdhury, S., Cui, Q., Yu, Z., Purisima, E.O. and Wang, E. 2007. Regulatory network motifs and hatspots of cancer genes in a mammalian cellular signalling network. IET Syst. Biol., 1(5):292-7.
-
-
-
-
2
-
-
0033764169
-
The small world of metabolism
-
Fell, D.A. and Wagner, A. 2000. The small world of metabolism. Nature Biotech., 18:1121-2.
-
(2000)
Nature Biotech
, vol.18
, pp. 1121-1122
-
-
Fell, D.A.1
Wagner, A.2
-
3
-
-
84865730611
-
A Set of Measures of Centrality Based on Betweenness
-
Freeman, L.C. 1977. A Set of Measures of Centrality Based on Betweenness. Sociometry, 40(6):35-41.
-
(1977)
Sociometry
, vol.40
, Issue.6
, pp. 35-41
-
-
Freeman, L.C.1
-
4
-
-
33750177351
-
Centrality in social networks: Conceptual clarification
-
Freeman, L.C. 1979. Centrality in social networks: Conceptual clarification. Social Networks, 1:215-39.
-
(1979)
Social Networks
, vol.1
, pp. 215-239
-
-
Freeman, L.C.1
-
5
-
-
0842290925
-
Molecular evolution in large genetic networks: Does connectivity equal constraint?
-
Hahn, M.W., Conant, G.C. and Wagner, A. 2004. Molecular evolution in large genetic networks: does connectivity equal constraint? J. Mol. Evol., 58(2):203-11.
-
(2004)
J. Mol. Evol
, vol.58
, Issue.2
, pp. 203-211
-
-
Hahn, M.W.1
Conant, G.C.2
Wagner, A.3
-
6
-
-
16344381521
-
Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks
-
Hahn, M.W. and Kern, A.D. 2005. Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. Mol. Biol. Evol., 22(4):803-6.
-
(2005)
Mol. Biol. Evol
, vol.22
, Issue.4
, pp. 803-806
-
-
Hahn, M.W.1
Kern, A.D.2
-
7
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong, H., Mason, S.P, Barabási, A.L. and Oltvai, Z.N. 2001. Lethality and centrality in protein networks. Nature, 411:41-2.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabási, A.L.3
Oltvai, Z.N.4
-
8
-
-
27744469130
-
High-betweenness proteins in the yeast protein interaction network
-
Joy, M.P., Brock, A., Ingber, D.E. and Huang, S. 2005. High-betweenness proteins in the yeast protein interaction network. J. Biomed. Biotechnol., 2:96-103.
-
(2005)
J. Biomed. Biotechnol
, vol.2
, pp. 96-103
-
-
Joy, M.P.1
Brock, A.2
Ingber, D.E.3
Huang, S.4
-
10
-
-
0002827622
-
A new status index derived from sociometric analysis
-
Katz, L. 1953. A new status index derived from sociometric analysis. Psychometrika, 18:39-43.
-
(1953)
Psychometrika
, vol.18
, pp. 39-43
-
-
Katz, L.1
-
11
-
-
0036500993
-
Systems biology: A brief overview
-
Kitano, H. 2002. Systems biology: A brief overview. Science, 295:1662-4.
-
(2002)
Science
, vol.295
, pp. 1662-1664
-
-
Kitano, H.1
-
13
-
-
77953382729
-
Centrality Indices, Chapter 3 in Brandes and Erlebach Network Analysis: Methodological Foundations
-
of, Springer
-
Koschützki, D., Lehmann, K.A., Peeters, L., Richter, S., Tenfelde-Podehl, D., Zlotowski, O. 2005. Centrality Indices, Chapter 3 in Brandes and Erlebach Network Analysis: Methodological Foundations, Volume 3418 of LNCS Tutorial, Springer.
-
(2005)
LNCS Tutorial
, vol.3418
-
-
Koschützki, D.1
Lehmann, K.A.2
Peeters, L.3
Richter, S.4
Tenfelde-Podehl, D.5
Zlotowski, O.6
-
14
-
-
34548419326
-
Ranking of network elements based on functional substructures
-
Koschützki, D., Schwöbbermeyer, H. and Schreiber, F. 2007. Ranking of network elements based on functional substructures. J. Theor. Biol., 248:471-9.
-
(2007)
J. Theor. Biol
, vol.248
, pp. 471-479
-
-
Koschützki, D.1
Schwöbbermeyer, H.2
Schreiber, F.3
-
15
-
-
77953387525
-
Network Centralities, Chapter 4 in Junker and Schreiber
-
Wiley
-
Koschützki, D. 2008. Network Centralities, Chapter 4 in Junker and Schreiber, Analysis of biological networks. Wiley.
-
(2008)
Analysis of biological networks
-
-
Koschützki, D.1
-
16
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee, T.I., Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I., Zeitlinger, J., Jennings, E.G., Murray, H.L., Gordon, D.B., Ren, B., Wyrick, J.J., Tagne, J.B., Volkert, T.L., Fraenkel, E., Gifford, D.K. and Young, R.A. 2002. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298(5594):799-804.
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Gordon, D.B.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.B.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
more..
-
17
-
-
0042093610
-
The connectivity structure, giant strong component and centrality of metabolic networks
-
Ma, H.W. and Zeng, A.P. 2003. The connectivity structure, giant strong component and centrality of metabolic networks. Bioinformatics, 19(11):1423-30.
-
(2003)
Bioinformatics
, vol.19
, Issue.11
, pp. 1423-1430
-
-
Ma, H.W.1
Zeng, A.P.2
-
18
-
-
0142027814
-
Structure and function of the feed-forward loop network motif
-
Mangan, S. and Alon, U. 2003. Structure and function of the feed-forward loop network motif. Proc. Natl. Acad. Sci. U.S.A., 100(21):11980-5.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A
, vol.100
, Issue.21
, pp. 11980-11985
-
-
Mangan, S.1
Alon, U.2
-
19
-
-
0242364231
-
The coherent feed-forward loop serves as a sign-sensitive delay element in transcription networks
-
Mangan, S., Zaslaver, A. and Alon, U. 2003. The coherent feed-forward loop serves as a sign-sensitive delay element in transcription networks. J. Mol. Biol., 334(2):197-204.
-
(2003)
J. Mol. Biol
, vol.334
, Issue.2
, pp. 197-204
-
-
Mangan, S.1
Zaslaver, A.2
Alon, U.3
-
20
-
-
0242386460
-
Identifying global regulators in transcriptional regulatory networks in bacteria
-
Martínez-Antonio, A. and Collado-Vides, J. 2003., Identifying global regulators in transcriptional regulatory networks in bacteria. Curr. Opin. Microbiol., 6(5):482-9.
-
(2003)
Curr. Opin. Microbiol
, vol.6
, Issue.5
, pp. 482-489
-
-
Martínez-Antonio, A.1
Collado-Vides, J.2
-
21
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
Milo, R., Shen-Orr, S., Itzkovitz, S., Kashtan, N., Chklovskii, D. and Alon, U. 2002. Network motifs: simple building blocks of complex networks. Science, 298(5594):824-7.
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
Alon, U.6
-
22
-
-
0037174638
-
Systems biology. Life's complexity pyramid
-
Oltvai, Z.N. and Barabási, A.L. 2002. Systems biology. Life's complexity pyramid. Science, 298:763-4.
-
(2002)
Science
, vol.298
, pp. 763-764
-
-
Oltvai, Z.N.1
Barabási, A.L.2
-
23
-
-
0003780986
-
The PageRank Citation Ranking: Bringing Order to the Web
-
Stanford Digital Library Technologies Project
-
Page, L., Brin, S., Motwani, R. and Winograd, T. 1998. The PageRank Citation Ranking: Bringing Order to the Web. Stanford Digital Library Technologies Project, technical report.
-
(1998)
technical report
-
-
Page, L.1
Brin, S.2
Motwani, R.3
Winograd, T.4
-
24
-
-
33748523023
-
Topology of mammalian transcription networks
-
Potapov, A.P., Voss, N., Sasse, N. and Wingender, E. 2005. Topology of mammalian transcription networks. Genome Inform., 16(2):270-8.
-
(2005)
Genome Inform
, vol.16
, Issue.2
, pp. 270-278
-
-
Potapov, A.P.1
Voss, N.2
Sasse, N.3
Wingender, E.4
-
25
-
-
33644873438
-
-
Salgado, H, Gama-Castro, S, Peralta-Gil, M, Daz-Peredo, E, Snchez-Solano, F, Santos-Zavaleta, A, Martnez-Flores, I, Jimnez-Jacinto, V, Bonavides-Martnez, C, Segura-Salazar, J, Martnez-Antonio, A. and Collado-Vides, J. 2006. RegulonDB, version 5.0, Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Res, 1(34):D394-397
-
Salgado, H., Gama-Castro, S., Peralta-Gil, M., Daz-Peredo, E., Snchez-Solano, F., Santos-Zavaleta, A., Martnez-Flores, I., Jimnez-Jacinto, V., Bonavides-Martnez, C., Segura-Salazar, J., Martnez-Antonio, A. and Collado-Vides, J. 2006. RegulonDB. (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Res., 1(34):D394-397.
-
-
-
-
26
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shen-Orr, S.S., Milo, R., Mangan, S. and Alon, U. 2002. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet., 31(1):64-8.
-
(2002)
Nat. Genet
, vol.31
, Issue.1
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
27
-
-
0031603015
-
Integration and radiality: Measuring the extent of an individual's connectedness and reachability in a network
-
Valente, T.W. and Foreman, R.K. 1998. Integration and radiality: measuring the extent of an individual's connectedness and reachability in a network. Social Networks, 1:89-105.
-
(1998)
Social Networks
, vol.1
, pp. 89-105
-
-
Valente, T.W.1
Foreman, R.K.2
-
28
-
-
19444376022
-
Multiple functions of a feed-forward-loop gene circuit
-
Wall, M.E., Dunlop, M.J. and Hlavacek, W.S. 2005. Multiple functions of a feed-forward-loop gene circuit. J. Mol. Biol., 349(3):501-514.
-
(2005)
J. Mol. Biol
, vol.349
, Issue.3
, pp. 501-514
-
-
Wall, M.E.1
Dunlop, M.J.2
Hlavacek, W.S.3
-
29
-
-
23644454631
-
Network motifs are enriched with transcription factors whose transcripts have short half-lives
-
Wang, E. and Purisima, E. 2005. Network motifs are enriched with transcription factors whose transcripts have short half-lives. Trends Genet., 21(9):492-5.
-
(2005)
Trends Genet
, vol.21
, Issue.9
, pp. 492-495
-
-
Wang, E.1
Purisima, E.2
-
30
-
-
0036916852
-
Interaction and domain networks of yeast
-
Wuchty, S. 2002, Interaction and domain networks of yeast. Proteomics, 2(12):1715-23.
-
(2002)
Proteomics
, vol.2
, Issue.12
, pp. 1715-1723
-
-
Wuchty, S.1
-
31
-
-
0038700482
-
Centers of complex networks
-
Wuchty, S. and Stadler, P.F. 2003. Centers of complex networks. J. Theor. Biol., 223(1):45-53.
-
(2003)
J. Theor. Biol
, vol.223
, Issue.1
, pp. 45-53
-
-
Wuchty, S.1
Stadler, P.F.2
|