메뉴 건너뛰기




Volumn 4, Issue , 2010, Pages

Spatial point pattern analysis of neurons using Ripley's K-function in 3D

Author keywords

Bootstrap resampling; Edge correction in 3D; Ripley's K function

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BRAIN FUNCTION; CONTROLLED STUDY; IMAGING AND DISPLAY; MATHEMATICAL ANALYSIS; MOUSE; NONHUMAN; RIPLEY K FUNCTION; SPATIAL SUMMATION; THREE DIMENSIONAL IMAGING; TWO DIMENSIONAL IMAGING;

EID: 77953423432     PISSN: 16625196     EISSN: None     Source Type: Journal    
DOI: 10.3389/fninf.2010.00009     Document Type: Article
Times cited : (43)

References (35)
  • 1
    • 21144463915 scopus 로고
    • Analysis of a three-dimensional point pattern with replication
    • Baddeley, A. J., Moyeed, R. A., Howard, C. V., and Boyde, A. (1993). Analysis of a three-dimensional point pattern with replication. J. R. Stat. Soc. 42, 641-668.
    • (1993) J. R. Stat. Soc , vol.42 , pp. 641-668
    • Baddeley, A.J.1    Moyeed, R.A.2    Howard, C.V.3    Boyde, A.4
  • 2
    • 13244287796 scopus 로고    scopus 로고
    • Statistical analysis of the threedimensional structure of centromeric heterochromatin in interphase nuclei
    • Beil, M., Fleischer, F., and Schmidt, V. (2005). Statistical analysis of the threedimensional structure of centromeric heterochromatin in interphase nuclei. J. Microsc. 217, 60-68.
    • (2005) J. Microsc , vol.217 , pp. 60-68
    • Beil, M.1    Fleischer, F.2    Schmidt, V.3
  • 3
    • 0026348413 scopus 로고
    • Spatial segregation between populations of ponto-cerebellar neurons. Statistical analysis of multivariate spatial interactions
    • Bjaalie, J. G., Diggle, P. J., Nikundiwe, A., Karagülle, T., and Brodal, P. (1991). Spatial segregation between populations of ponto-cerebellar neurons. Statistical analysis of multivariate spatial interactions. Anat. Rec. 231, 510-523.
    • (1991) Anat. Rec , vol.231 , pp. 510-523
    • Bjaalie, J.G.1    Diggle, P.J.2    Nikundiwe, A.3    Karagülle, T.4    Brodal, P.5
  • 4
    • 33749050824 scopus 로고    scopus 로고
    • Towards neural circuit reconstruction with volume electron microscopy techniques
    • Briggman, K. L., and Denk, W. (2006). Towards neural circuit reconstruction with volume electron microscopy techniques. Curr. Opin. Neurobiol. 6, 562-570.
    • (2006) Curr. Opin. Neurobiol , vol.6 , pp. 562-570
    • Briggman, K.L.1    Denk, W.2
  • 6
    • 34247107955 scopus 로고    scopus 로고
    • Voronoi analysis uncovers relationship between mosaics of normally placed and displaced amacrine cells in the thraira retina
    • Costa, L. da F., Bonci, D. M. O., Saito, C. A., Rocha, F. A. de F., Silveira, L. C. de L., and Ventura, D. F. (2007). Voronoi analysis uncovers relationship between mosaics of normally placed and displaced amacrine cells in the thraira retina. Neuroinformatics 5, 59-78.
    • (2007) Neuroinformatics , vol.5 , pp. 59-78
    • da Costa, L.F.1    Bonci, D.M.O.2    Saito, C.A.3    de Rocha, F.A.F.4    de Silveira, L.C.L.5    Ventura, D.F.6
  • 7
    • 42449152032 scopus 로고    scopus 로고
    • Diagnosis of solitary lung nodules using the local form of Ripley's K function applied to three-dimensional CT data
    • da Silva, E. C., Silva, A. C., de Paiva, A. C., Nunes, R. A., and Gattass, M. (2008). Diagnosis of solitary lung nodules using the local form of Ripley's K function applied to three-dimensional CT data. Comput. Methods Programs Biomed. 90, 230-239.
    • (2008) Comput. Methods Programs Biomed , vol.90 , pp. 230-239
    • da Silva, E.C.1    Silva, A.C.2    de Paiva, A.C.3    Nunes, R.A.4    Gattass, M.5
  • 8
    • 0022974543 scopus 로고
    • Displaced amacrine cells in the retina of a rabbit: Analysis of a bivariate spatial point pattern
    • Diggle, P. J. (1986). Displaced amacrine cells in the retina of a rabbit: analysis of a bivariate spatial point pattern. J. Neurosci. Methods 18, 115-125.
    • (1986) J. Neurosci. Methods , vol.18 , pp. 115-125
    • Diggle, P.J.1
  • 10
    • 84982044581 scopus 로고
    • Edge-corrected estimators for the reduced second moment measure of point processes
    • Doguwa, S. I., and Upton, G. J. G. (1988). Edge-corrected estimators for the reduced second moment measure of point processes. Biom. J. 31, 563-575.
    • (1988) Biom. J , vol.31 , pp. 563-575
    • Doguwa, S.I.1    Upton, G.J.G.2
  • 11
    • 0033793224 scopus 로고    scopus 로고
    • Voronoi tessellation to study the numerical density and the spatial distribution of neurons
    • Duyckaerts, C., and Godefroy, G. (2000). Voronoi tessellation to study the numerical density and the spatial distribution of neurons. J. Chem. Neuroanat. 20, 83-92.
    • (2000) J. Chem. Neuroanat , vol.20 , pp. 83-92
    • Duyckaerts, C.1    Godefroy, G.2
  • 12
    • 0028351816 scopus 로고
    • Evaluation of neuronal numerical density by Dirichlet tessellation
    • Duyckaerts, C., Godefroy, G., and Hauw, J.-J. (1994). Evaluation of neuronal numerical density by Dirichlet tessellation. J. Neurosci. Methods 51, 47-69.
    • (1994) J. Neurosci. Methods , vol.51 , pp. 47-69
    • Duyckaerts, C.1    Godefroy, G.2    Hauw, J.-J.3
  • 14
    • 48549105199 scopus 로고    scopus 로고
    • Analysis of spatial relationships in three dimensions: Tools for the study of nerve cell patterning
    • Eglen, S. J., Lofgreen, D. D., Raven, M. A., and Reese, B. E. (2008). Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning. BMC Neurosci. 9, 68.
    • (2008) BMC Neurosci , vol.9 , pp. 68
    • Eglen, S.J.1    Lofgreen, D.D.2    Raven, M.A.3    Reese, B.E.4
  • 16
    • 77953410982 scopus 로고    scopus 로고
    • Structure-function analysis of genetically defi ned neuronal populations
    • eds R. Yuste, A. Konnerth and F. Helmchen (New York: CSHL Press
    • Groh, A., and Krieger, P. (2010). "Structure-function analysis of genetically defi ned neuronal populations," in Optical Imaging in Neuroscience: A Laboratory Manual. eds R. Yuste, A. Konnerth and F. Helmchen (New York: CSHL Press).
    • (2010) Optical Imaging In Neuroscience: A Laboratory Manual
    • Groh, A.1    Krieger, P.2
  • 17
    • 77949388409 scopus 로고    scopus 로고
    • Cell-type specifi c properties of pyramidal neurons in neocortex underlying a layout that is modifi able depending on the cortical area
    • Epub. 2009 Jul 30
    • Groh, A., Meyer, H. S., Schmidt, E., Heintz, N., Sakmann, B., and Krieger, P. (2010). Cell-type specifi c properties of pyramidal neurons in neocortex underlying a layout that is modifi able depending on the cortical area. Cereb. Cortex 20, 826-36. Epub. 2009 Jul 30.
    • (2010) Cereb. Cortex , vol.20 , pp. 826-836
    • Groh, A.1    Meyer, H.S.2    Schmidt, E.3    Heintz, N.4    Sakmann, B.5    Krieger, P.6
  • 20
    • 0035968430 scopus 로고    scopus 로고
    • Neuroscience databases: Tools for exploring brain structure- function relationships
    • Kötter, R. (2001). Neuroscience databases: tools for exploring brain structure- function relationships. Philos. Trans. R. Soc. Lond., B, Biol. Sci. 356, 1111-1120.
    • (2001) Philos. Trans. R. Soc. Lond., B, Biol. Sci , vol.356 , pp. 1111-1120
    • Kötter, R.1
  • 21
    • 35548949450 scopus 로고    scopus 로고
    • Synaptic connections between layer 5B pyramidal neurons in mouse somatosensory cortex are independent of apical dendrite bundling
    • Krieger, P., Kuner, T., and Sakmann, B. (2007). Synaptic connections between layer 5B pyramidal neurons in mouse somatosensory cortex are independent of apical dendrite bundling. J. Neurosci. 27, 11473-11482.
    • (2007) J. Neurosci , vol.27 , pp. 11473-11482
    • Krieger, P.1    Kuner, T.2    Sakmann, B.3
  • 22
    • 77953441823 scopus 로고    scopus 로고
    • A 3D multimodal and multi-dimensional digital brain model as a framework for data sharing
    • Epub. 2009 Dec 28
    • Mailly, P., Haber, S. N., Groenewegen, H. J., and Deniau, J. M. (2009). A 3D multimodal and multi-dimensional digital brain model as a framework for data sharing. J. Neurosci. Methods. Epub. 2009 Dec 28.
    • (2009) J. Neurosci. Methods
    • Mailly, P.1    Haber, S.N.2    Groenewegen, H.J.3    Deniau, J.M.4
  • 23
    • 40649095676 scopus 로고    scopus 로고
    • The cell centered database project: An update on building community resources for managing and sharing 3D imaging data
    • Martone, M. E., Tran, J., Wong, W. W., Sargis, J., Fong, L., Larson, S., Lamont, S. P., Gupta, A., and Ellisman, M. H. (2008). The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. J. Struct. Biol. 161, 220-231.
    • (2008) J. Struct. Biol , vol.161 , pp. 220-231
    • Martone, M.E.1    Tran, J.2    Wong, W.W.3    Sargis, J.4    Fong, L.5    Larson, S.6    Lamont, S.P.7    Gupta, A.8    Ellisman, M.H.9
  • 25
  • 26
    • 33846280527 scopus 로고    scopus 로고
    • Spatial clustering analysis in neuroanatomy: Applications of different approaches to motor nerve fi ber distribution
    • Epub. 2006 Oct 17
    • Prodanov, D., Nagelkerke, N., and Marani, E. (2007). Spatial clustering analysis in neuroanatomy: applications of different approaches to motor nerve fi ber distribution. J. Neurosci. Methods 160, 93-108. Epub. 2006 Oct 17.
    • (2007) J. Neurosci. Methods , vol.160 , pp. 93-108
    • Prodanov, D.1    Nagelkerke, N.2    Marani, E.3
  • 27
    • 0030991898 scopus 로고    scopus 로고
    • Edge-corrected estimators of the nearest-neighbour distance distribution function for three-dimensional point patterns
    • Reed, M. G., and Howard, C. V. (1997). Edge-corrected estimators of the nearest-neighbour distance distribution function for three-dimensional point patterns. J. Microsc. 186, 177-184.
    • (1997) J. Microsc , vol.186 , pp. 177-184
    • Reed, M.G.1    Howard, C.V.2
  • 29
    • 5444243642 scopus 로고    scopus 로고
    • Aspects of the organization of neurons and dendritic bundles in primary somatosensory cortex of the rat
    • Skoglund, T. S., Pascher, R., and Berthold, C.-H. (2004). Aspects of the organization of neurons and dendritic bundles in primary somatosensory cortex of the rat. Neurosci. Res. 50, 189-198.
    • (2004) Neurosci. Res , vol.50 , pp. 189-198
    • Skoglund, T.S.1    Pascher, R.2    Berthold, C.-H.3
  • 31
    • 0034338192 scopus 로고    scopus 로고
    • Improving ratio estimators of second order point process characteristics
    • Stoyan, D., and Stoyan, H. (2000). Improving ratio estimators of second order point process characteristics. Scand. J. Stat. 27, 641-656.
    • (2000) Scand. J. Stat , vol.27 , pp. 641-656
    • Stoyan, D.1    Stoyan, H.2
  • 32
    • 47749124550 scopus 로고    scopus 로고
    • Quasi-plus sampling edge correction for spatial point patterns
    • Tscheschel, A., and Chiu, S. N. (2008). Quasi-plus sampling edge correction for spatial point patterns. Scand. J. 52, 5287-5295.
    • (2008) Scand. J , vol.52 , pp. 5287-5295
    • Tscheschel, A.1    Chiu, S.N.2
  • 33
    • 3242801152 scopus 로고    scopus 로고
    • Somatodendritic minicolumns of output neurons in the rat visual cortex
    • Vercelli, A. E., Garbossa, D., Curtetti, R., and Innocenti, G. M. (2004). Somatodendritic minicolumns of output neurons in the rat visual cortex. Eur. J. Neurosci. 20, 495-502.
    • (2004) Eur. J. Neurosci , vol.20 , pp. 495-502
    • Vercelli, A.E.1    Garbossa, D.2    Curtetti, R.3    Innocenti, G.M.4
  • 34
    • 0033559667 scopus 로고    scopus 로고
    • New derivation reduces bias and increases power of Ripley's L index
    • Ward, J. S., and Ferrandino, F. J. (1999). New derivation reduces bias and increases power of Ripley's L index. Ecol. Modell. 116, 225-236.
    • (1999) Ecol. Modell , vol.116 , pp. 225-236
    • Ward, J.S.1    Ferrandino, F.J.2
  • 35
    • 0027250098 scopus 로고
    • Cortical modules in the posteromedial barrel subfi eld (Sml) of the mouse
    • White, E. L., and Peters, A. (1993). Cortical modules in the posteromedial barrel subfi eld (Sml) of the mouse. J. Comp. Neurol. 334, 86-96.
    • (1993) J. Comp. Neurol , vol.334 , pp. 86-96
    • White, E.L.1    Peters, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.