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Volumn 2009, Issue 3, 2009, Pages 1-10

Patterns of stochastic behavior in dynamically unstable high-dimensional biochemical networks

Author keywords

Asymptotic stability; Biochemical networks; Gene expression; Nonlinear dynamics; Stochasticity

Indexed keywords

ARTICLE; BIOCHEMISTRY; CHEMICAL REACTION KINETICS; GENE EXPRESSION; GENE REGULATORY NETWORK; MATHEMATICAL MODEL; MULTIDIMENSIONAL SCALING; NONLINEAR SYSTEM; POISSON DISTRIBUTION; SIMULATION; STATISTICS; STOICHIOMETRY; VALIDATION PROCESS;

EID: 77953409526     PISSN: None     EISSN: 11776250     Source Type: Journal    
DOI: 10.4137/grsb.s2078     Document Type: Article
Times cited : (10)

References (38)
  • 1
    • 0015514970 scopus 로고
    • a large complex system be stable?
    • May RM. Will a large complex system be stable? Nature. 1972;238:413.
    • (1972) Nature , vol.238 , pp. 413
    • Will, M.R.M.1
  • 2
    • 35348898041 scopus 로고    scopus 로고
    • Stochastic cooperativity in non-linear dynamics of genetic regulatory networks
    • Rosenfeld S. Stochastic cooperativity in non-linear dynamics of genetic regulatory networks. Math Biosci. 2007;210:121.
    • (2007) Math Biosci , vol.210 , pp. 121
    • Rosenfeld, S.1
  • 10
    • 77953420405 scopus 로고    scopus 로고
    • Rosenfeld S. Stochastic Oscillations in Genetic Regulatory Networks. Applications to Microarray Experiment, in: A Rizzi, M Vichi (Eds.), COMPSTAT-2006, Physica-Verlag, 2006. p. 1609-18.
    • Rosenfeld S. Stochastic Oscillations in Genetic Regulatory Networks. Applications to Microarray Experiment, in: A Rizzi, M Vichi (Eds.), COMPSTAT-2006, Physica-Verlag, 2006. p. 1609-18.
  • 11
    • 3843126332 scopus 로고    scopus 로고
    • RNA dynamics in live Escherichia coli cells
    • Golding I, Cox EC. RNA dynamics in live Escherichia coli cells, Proc Natl Acad Sci U S A. 2004;101:11310.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 11310
    • Golding, I.1    Cox, E.C.2
  • 12
    • 28944434119 scopus 로고    scopus 로고
    • Real-time kinetics of gene activity in individual bacteria
    • Golding I, Paulsson J., Zawilski SM, Cox EC. Real-time kinetics of gene activity in individual bacteria. Cell. 123 2005 1025.
    • (2005) Cell , vol.123 , pp. 1025
    • Golding, I.1    Paulsson, J.2    Zawilski, S.M.3    Cox, E.C.4
  • 13
    • 0141958996 scopus 로고    scopus 로고
    • Microarray - Guilt by Association
    • Quackenbush J. Microarray - Guilt by Association. Science. 2003;302:240.
    • (2003) Science , vol.302 , pp. 240
    • Quackenbush, J.1
  • 14
    • 77953435250 scopus 로고    scopus 로고
    • Origins of Stochasticity and Burstiness in High-Dimensional Biochemical Networks, EURASIP
    • Rosenfeld S. Origins of Stochasticity and Burstiness in High-Dimensional Biochemical Networks, EURASIP Journal of Bioinformatics and Systems Biology. 2008.
    • (2008) Journal of Bioinformatics and Systems Biology
    • Rosenfeld, S.1
  • 15
    • 0001364051 scopus 로고
    • The existence and uniqueness of steady states for a class of chemical reaction networks
    • Feinberg M. The existence and uniqueness of steady states for a class of chemical reaction networks. Arch Rational Mech Anal. 1995;132:311.
    • (1995) Arch Rational Mech Anal , vol.132 , pp. 311
    • Feinberg, M.1
  • 16
    • 0000058258 scopus 로고
    • Global stability of deficiency zero chemical networks
    • Siegel D, Chen Y. Global stability of deficiency zero chemical networks, Canad Appl Math Quart. 1994;2:413.
    • (1994) Canad Appl Math Quart , vol.2 , pp. 413
    • Siegel, D.1    Chen, Y.2
  • 18
    • 0029394767 scopus 로고
    • Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli?
    • Guptasarma P. Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? Bioessays. 1995;17:987.
    • (1995) Bioessays , vol.17 , pp. 987
    • Guptasarma, P.1
  • 19
    • 0033083733 scopus 로고    scopus 로고
    • It's a noisy business! Genetic regulation at the nanomolar scale
    • McAdams HH, Arkin A. It's a noisy business! Genetic regulation at the nanomolar scale. Trends Genet. 15;1999:65.
    • (1999) Trends Genet , vol.15 , pp. 65
    • McAdams, H.H.1    Arkin, A.2
  • 20
    • 0034667792 scopus 로고    scopus 로고
    • Orchestrated response: A symphony of transcription factors for gene control
    • Lemon B., Tjian R. Orchestrated response: a symphony of transcription factors for gene control. Genes Dev. 2000;14:2551.
    • (2000) Genes Dev , vol.14 , pp. 2551
    • Lemon, B.1    Tjian, R.2
  • 21
    • 33749538696 scopus 로고    scopus 로고
    • Approximation of dynamical systems using S-Systems theory: Application to biological systems
    • Tournier L. Approximation of dynamical systems using S-Systems theory: Application to biological systems. International Symposium on Symbolic and Algebraic Computations. 2005. p. 317-324.
    • (2005) International Symposium on Symbolic and Algebraic Computations , pp. 317-324
    • Tournier, L.1
  • 25
    • 25144480947 scopus 로고    scopus 로고
    • Prime movers of noisy gene expression
    • Paulsson J. Prime movers of noisy gene expression. Nat Genet. 2005;37:925.
    • (2005) Nat Genet , vol.37 , pp. 925
    • Paulsson, J.1
  • 27
    • 7644238181 scopus 로고    scopus 로고
    • Biological robustness
    • Kitano H. Biological robustness. Nat Rev Genet. 2004;5:826.
    • (2004) Nat Rev Genet , vol.5 , pp. 826
    • Kitano, H.1
  • 28
    • 41649110614 scopus 로고    scopus 로고
    • Gene duplications, robustness and evolutionary innovations
    • Wagner A. Gene duplications, robustness and evolutionary innovations. Bioessays. 2008;30:367.
    • (2008) Bioessays , vol.30 , pp. 367
    • Wagner, A.1
  • 31
    • 0042100651 scopus 로고
    • What is the role of chaotic scattering in irreversible processes?
    • Gaspard P. What is the role of chaotic scattering in irreversible processes? Chaos. 1993;3:427.
    • (1993) Chaos , vol.3 , pp. 427
    • Gaspard, P.1
  • 32
    • 85045225438 scopus 로고
    • Relaxation processes in statistical systems
    • Krylov N. Relaxation processes in statistical systems. Nature. 1944; 153:709.
    • (1944) Nature , vol.153 , pp. 709
    • Krylov, N.1
  • 33
    • 0034212551 scopus 로고    scopus 로고
    • Engineering stability in gene networks by autoregulation 20
    • Becskei A, Serrano L. Engineering stability in gene networks by autoregulation 20. Nature. 2000;405:590.
    • (2000) Nature , vol.405 , pp. 590
    • Becskei, A.1    Serrano, L.2
  • 34
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • Shen-Orr SS, Milo R, Mangan S, Alon U. Network motifs in the transcriptional regulation network of Escherichia coli, Nat. Genet. 31;2002;64.
    • (2002) Nat. Genet , vol.31 , pp. 64
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 36
    • 84876731888 scopus 로고    scopus 로고
    • Computational Models of Metabolism: Stability and Regulation in Metabolic Networks
    • in press
    • Steuer R, Junker B. Computational Models of Metabolism: Stability and Regulation in Metabolic Networks. Advances of Chemical Physics (in press) 2009.
    • (2009) Advances of Chemical Physics
    • Steuer, R.1    Junker, B.2
  • 37
    • 33745075591 scopus 로고    scopus 로고
    • Tools for kinetic modeling of biochemical networks
    • Alves R, Antunes F, Salvador A. Tools for kinetic modeling of biochemical networks. Nat Biotechnol. 2006;24:667.
    • (2006) Nat Biotechnol , vol.24 , pp. 667
    • Alves, R.1    Antunes, F.2    Salvador, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.