Reclassification of Herbaspirillum putei as a later heterotypic synonym of Herbaspirillum huttiense, with the description of H. huttiense subsp. huttiense subsp. nov. and H. huttiense subsp. putei subsp. nov., comb. nov., and description of Herbaspirillum aquaticum sp. nov.

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 6, 2010, Pages 1418-1426

  Dobritsa, Anatoly P ^a   Reddy, M C S ^a   Samadpour, Mansour ^a  

^a Institute for Environmental Health Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; RESTRICTION ENDONUCLEASE; RNA 16S;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; HERBASPIRILLUM; HERBASPIRILLUM AQUATICUM; HERBASPIRILLUM HUTTIENSE; HERBASPIRILLUM PUTEI; LIPID COMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; SUBSPECIES; TYPE STRAIN;

BASE COMPOSITION; BASE SEQUENCE; DNA PRIMERS; DNA, BACTERIAL; FATTY ACIDS; GENOME; HERBASPIRILLUM; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S;

BACTERIA (MICROORGANISMS); HERBASPIRILLUM; HERBASPIRILLUM HUTTIENSE; HERBASPIRILLUM PUTEI;

EID: 77953350009     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.009381-0     Document Type: Article

References (19)

1. VP emend. Baldani, Pot, Kirchhof, Falsen, Baldani, Olivares, Hoste, Kersters, Hartmann, Gillis and Döbereiner 1996, 808. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part C, pp. 629-636. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
2. Barton, B. M., Harding, G. P. & Zuccarelli, A. J. (1995). A general method for detecting and sizing large plasmids. Anal Biochem 226, 235-240.
3. Ding, L. & Yokota, A. (2004). Proposals of Curvibacter gracilis gen. nov., sp. nov. and Herbaspirillum putei sp. nov. for bacterial strains isolated from well water and reclassification of [Pseudomonas] huttiensis, [Pseudomonas] lanceolata, [Aquaspirillum] delicatum and [Aquaspirillum] autotrophicum as Herbaspirillum huttiense comb. nov., Curvibacter lanceolatus comb. nov., Curvibacter delicatus comb. nov. and Herbaspirillum autotrophicum comb. nov. Int J Syst Evol Microbiol 54, 2223-2230.
4. Döbereiner, J. (1995). Isolation and identification of aerobic nitrogen-fixing bacteria from soil and plants. In Methods in Applied Soil Microbiology and Biochemistry, pp. 134-141. Edited by K. Alef & P. Nannipieri. London: Academic Press.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229. (Pubitemid 19175038)
6. Forster, A. C., McInnes, J. L., Skingle, D. C. & Symons, R. H. (1985). Non-radioactive hybridization probes prepared by the chemical labelling of DNA and RNA with a novel reagent, photobiotin. Nucleic Acids Res 13, 745-761.
7. Gautom, R. K. (1997). Rapid pulsed-field gel electrophoresis protocol for typing of Escherichia coli O157 :H7 and other gram-negative organisms in 1 day. J Clin Microbiol 35, 2977-2980.
8. Goris, J., Konstantinidis, K. T., Klappenbach, J. A., Coenye, T., Vandamme, P. & Tiedje, J. M. (2007). DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57, 81-91.
9. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
10. Hunter, S. B., Vauterin, P., Lambert-Fair, M. A., Van Duyne, M. S., Kubota, K., Graves, L., Wrigley, D., Barrett, T. & Ribot, E. (2005). Establishment of a universal size standard strain for use with the PulseNet standardized pulsed-field gel electrophoresis protocols: converting the national databases to the new size standard. J Clin Microbiol 43, 1045-1050.
11. Jung, S.-Y., Lee, M.-H., Oh, T.-K. & Yoon, J.-H. (2007). Herbaspirillum rhizosphaerae sp. nov., isolated from rhizosphere soil of Allium victorialis var. platyphyllum. Int J Syst Evol Microbiol 57, 2284-2288.
12. Lapage, S. P., Sneath, P. H. A., Lessel, E. F., Skerman, V. B. D., Seeliger, H. P. R. & Clark, W. A. (editors) (1992). International Code of Nomenclature of Bacteria (1990 Revision). Bacteriological Code. Washington, DC: American Society for Microbiology.
13. Leifson, E. (1962). The bacterial flora of distilled and stored water. III. New species of the genera Corynebacterium, Flavobacterium, Spirillum and Pseudomonas. Int Bull Bacteriol Nomencl Taxon 12, 161-170.
14. MacFaddin, J. F. (2000). Biochemical Tests for Identification of Medical Bacteria, 3rd edn. New York: Lippincott, Williams & Wilkins.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Rothballer, M., Schmid, M., Klein, I., Gattinger, A., Grundmann, S. & Hartmann, A. (2006). Herbaspirillum hiltneri sp. nov., isolated from surface-sterilized wheat roots. Int J Syst Evol Microbiol 56, 1341-1348.
17. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
18. Stoltzfus, J. R., So, R., Malarvithi, P. P., Ladha, J. K. & de Bruijn, F. J. (1997). Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen. Plant Soil 194, 25-36. (Pubitemid 27463641)
19. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.