메뉴 건너뛰기




Volumn 7, Issue 4, 2008, Pages 508-514

PCR fingerprinting for identification and discrimination of plant-associated facultative methylobacteria

Author keywords

ARDRA; BOX PCR; ERIC PCR; Methylobacterium; RAPD; RISA

Indexed keywords

BACTERIAL DNA; BIOLOGICAL MARKER; CARBON; GENOMIC DNA; RIBOSOME DNA;

EID: 77953311496     PISSN: 09725849     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (5)

References (31)
  • 1
    • 0002742149 scopus 로고
    • The genus Methylobacterium
    • nd edin, edited by A Balows, H G Trüper, M Dworkin, W Harder & K H Schleifer (Springer, Berlin)
    • nd edin, edited by A Balows, H G Trüper, M Dworkin, W Harder & K H Schleifer (Springer, Berlin) 1992, 2342-2349.
    • (1992) The Prokaryotes , pp. 2342-2349
    • Green, P.N.1
  • 2
    • 2242486271 scopus 로고    scopus 로고
    • Aerobic methylotrophic bacteria as phytosymbionts
    • Trotsenko I A, Ivanova E G & Doronina N V, Aerobic methylotrophic bacteria as phytosymbionts, Microbiology, 70 (2001) 725-736.
    • (2001) Microbiology , vol.70 , pp. 725-736
    • Trotsenko, I.A.1    Ivanova, E.G.2    Doronina, N.V.3
  • 3
    • 0042937010 scopus 로고    scopus 로고
    • The ways of plant colonization by Methylobacterium strains and properties of these bacteria
    • Romanovskaya V A, Stolyar S M, Malashenko Y R & Dodatko T N, The ways of plant colonization by Methylobacterium strains and properties of these bacteria, Microbiology, 70 (2001) 221-227. (Pubitemid 33751916)
    • (2001) Microbiology , vol.70 , Issue.2 , pp. 221-227
    • Romanovskaya, V.A.1    Stolyar, S.M.2    Malashenko, Yu.R.3    Dodatko, T.N.4
  • 4
    • 33745389284 scopus 로고    scopus 로고
    • Regulation of ethylene levels in canola (Brassica campestris) by 1-aminocyclopropane-1-carboxylate deaminase-containing Methylobacterium fujisawaense
    • Madhaiyan M, Poonguzhali S, Ryu J & Sa T, Regulation of ethylene levels in canola (Brassica campestris) by 1-aminocyclopropane-1-carboxylate deaminase-containing Methylobacterium fujisawaense, Planta, 224 (2006) 268-278.
    • (2006) Planta , vol.224 , pp. 268-278
    • Madhaiyan, M.1    Poonguzhali, S.2    Ryu, J.3    Sa, T.4
  • 5
    • 4344690052 scopus 로고    scopus 로고
    • Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34)
    • Van-Aken B, Peres C M, Doty S L, Yoon J M & Schnoor J L, Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34), Int J Syst Evol Microbiol, 54 (2004) 1191-1196.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1191-1196
    • Van-Aken, B.1    Peres, C.M.2    Doty, S.L.3    Yoon, J.M.4    Schnoor, J.L.5
  • 6
    • 0035180979 scopus 로고    scopus 로고
    • Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes
    • Sy A, Giraud E, Jourand P, Garcia N, Willems A et al, Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes, J Bacteriol, 183 (2001) 214-220.
    • (2001) J Bacteriol , vol.183 , pp. 214-220
    • Sy, A.1    Giraud, E.2    Jourand, P.3    Garcia, N.4    Willems, A.5
  • 7
    • 9744239475 scopus 로고    scopus 로고
    • Methylobacterium nodulans sp. nov., for a group of aerobic, facultatively methylotrophic, legume root-nodule-forming and nitrogen-fixing bacteria
    • Jourand P, Giraud E, Bena G, Sy A, Willems A et al, Methylobacterium nodulans sp. nov., for a group of aerobic, facultatively methylotrophic, legume root-nodule-forming and nitrogen-fixing bacteria, Int J Syst Evol Microbiol, 54 (2004) 2269-2273.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2269-2273
    • Jourand, P.1    Giraud, E.2    Bena, G.3    Sy, A.4    Willems, A.5
  • 8
    • 0036205488 scopus 로고    scopus 로고
    • tRNA is the source of low-level trans-zeatin production in Methylobacterium spp
    • Koenig R L, Morris R O & Polacco J C, tRNA is the source of low-level trans-zeatin production in Methylobacterium spp., J Bacteriol, 184 (2002) 1832-1842.
    • (2002) J Bacteriol , vol.184 , pp. 1832-1842
    • Koenig, R.L.1    Morris, R.O.2    Polacco, J.C.3
  • 9
    • 33749007386 scopus 로고    scopus 로고
    • Plant growth-promoting Methylobacterium induces defense responses in groundnut (Arachis hypogaea L.) compared with root pathogen
    • Madhaiyan M, Suresh Reddy B V, Anandam R, Senthilkumar M, Poonguzhali S, Sundaram S P & Sa T, Plant growth-promoting Methylobacterium induces defense responses in groundnut (Arachis hypogaea L.) compared with root pathogen. Curr Microbiol, 53 (2006) 270-276.
    • (2006) Curr Microbiol , vol.53 , pp. 270-276
    • Madhaiyan, M.1    Suresh Reddy, B.V.2    Anandam, R.3    Senthilkumar, M.4    Poonguzhali, S.5    Sundaram, S.P.6    Sa, T.7
  • 10
    • 0032904916 scopus 로고    scopus 로고
    • Principles and applications of methods for DNA-based typing of microbial organisms
    • Olive D M & Bean P, Principles and application of methods for DNA-based typing of microbial organisms, J Clin Microbiol, 37 (1999) 1661-1669. (Pubitemid 29235203)
    • (1999) Journal of Clinical Microbiology , vol.37 , Issue.6 , pp. 1661-1669
    • Olive, D.M.1    Bean, P.2
  • 11
    • 32044467141 scopus 로고    scopus 로고
    • Random amplification of polymorphic DNA (RAPD) typing of Carnobacteria isolated from hindgut chamber and large intestine of Atlantic cod (Gadus morhua I)
    • Seppola M, Olsen R E, Sandarker E, Kanapathippillai P, Holzapfel W & Ringo E, Random amplification of polymorphic DNA (RAPD) typing of Carnobacteria isolated from hindgut chamber and large intestine of Atlantic cod (Gadus morhua I), Syst Appl Microbiol, 29 (2006) 131-137.
    • (2006) Syst Appl Microbiol , vol.29 , pp. 131-137
    • Seppola, M.1    Olsen, R.E.2    Sandarker, E.3    Kanapathippillai, P.4    Holzapfel, W.5    Ringo, E.6
  • 13
    • 0030220506 scopus 로고    scopus 로고
    • Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy
    • Heyndrickx M, Vauterin L, Vandamme P, Kersters K & De Vos P, Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy, J Microbiol Methods, 26 (1996) 247-259.
    • (1996) J Microbiol Methods , vol.26 , pp. 247-259
    • Heyndrickx, M.1    Vauterin, L.2    Vandamme, P.3    Kersters, K.4    De Vos, P.5
  • 14
    • 0034466653 scopus 로고    scopus 로고
    • Sequencing bands of RISA fingerprints for the characterization and the microscale distribution of soil bacterial populations responding to mercury spiking
    • Ranjard L, Brotheir E & Nazaret S, Sequencing bands of RISA fingerprints for the characterization and the microscale distribution of soil bacterial populations responding to mercury spiking, Appl Environ Microbiol, 66 (2000) 5334-5339.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5334-5339
    • Ranjard, L.1    Brotheir, E.2    Nazaret, S.3
  • 15
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
    • Versalovic J, Koeuth T & Lupski J R, Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacteria genomes, Nucleic Acids Res, 19 (1991) 6823-6831. (Pubitemid 21913121)
    • (1991) Nucleic Acids Research , vol.19 , Issue.24 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3
  • 17
    • 33746103308 scopus 로고    scopus 로고
    • Effectiveness of enterobacterial repetitive intergenic consensus PCR and random amplified polymorphic DNA fingerprinting for Helicobacter pyroli strain differentiation
    • Finger S A, Velapatino B, Kosek M, Santivanez L, Dailidiene D et al, Effectiveness of enterobacterial repetitive intergenic consensus PCR and random amplified polymorphic DNA fingerprinting for Helicobacter pyroli strain differentiation, Appl Environ Microbiol, 72 (2006) 4713-4716.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4713-4716
    • Finger, S.A.1    Velapatino, B.2    Kosek, M.3    Santivanez, L.4    Dailidiene, D.5
  • 18
    • 0027977677 scopus 로고
    • PPFMs and other covert contaminants: Is there more to plant physiology than just plant?
    • Holland M A & Polacco J C, PPFMs and other covert contaminants: Is there more to plant physiology than just plant? Annu Rev Plant Physiol Plant Mol Biol, 45 (1994) 197-209. (Pubitemid 2107260)
    • (1994) ANNU.REV.PLANT PHYSIOL.PLANT MOL.BIOL. , vol.45 , pp. 197-209
    • Holland, M.A.1    Polacco, J.C.2
  • 21
    • 0000458560 scopus 로고
    • Random amplified polymorphic DNA markers: A system for identifying and differentiating isolates of Colletotrichum graminicola
    • Guthrie P A I, Magill C W, Fredriksen R A & Odyody G N, Random amplified polymorphic DNA markers: A system for identifying and differentiating isolates of Colletotrichum graminicola, Phytopathology, 82 (1992) 832-835.
    • (1992) Phytopathology , vol.82 , pp. 832-835
    • Guthrie, P.A.I.1    Magill, C.W.2    Fredriksen, R.A.3    Odyody, G.N.4
  • 22
    • 33745505383 scopus 로고    scopus 로고
    • Impact of the maize rhizosphere on the genetic structure, the diversity and the Atrazine-degrading gene composition of cultivable Atrazine-degrading communities
    • Martin-Laurent F, Barres B, Wangschal I, Piutti S, Devers M et al, Impact of the maize rhizosphere on the genetic structure, the diversity and the Atrazine-degrading gene composition of cultivable Atrazine-degrading communities, Plant Soil, 282 (2006) 99-115.
    • (2006) Plant Soil , vol.282 , pp. 99-115
    • Martin-Laurent, F.1    Barres, B.2    Wangschal, I.3    Piutti, S.4    Devers, M.5
  • 23
    • 2942592474 scopus 로고    scopus 로고
    • Implications of molecular genotyping of Helicobacter pylori isolates from different human populations by genomic fingerprinting of entrobacterial repetitive intergenic consensus regions for strain identification and geographic evolution
    • Hussain M A, Kauser F, Khan A A, Tiwari S, Habibullah C M & Ahmad N, Implications of molecular genotyping of Helicobacter pylori isolates from different human populations by genomic fingerprinting of entrobacterial repetitive intergenic consensus regions for strain identification and geographic evolution, J Clin Microbiol, 42 (2004) 2372-2378.
    • (2004) J Clin Microbiol , vol.42 , pp. 2372-2378
    • Hussain, M.A.1    Kauser, F.2    Khan, A.A.3    Tiwari, S.4    Habibullah, C.M.5    Ahmad, N.6
  • 24
    • 33751548695 scopus 로고    scopus 로고
    • Non-nodulating pink-pigmented facultative Methylobacterium sp. with a functional nifH gene
    • Raja P, Uma S & Sundaram S P, Non-nodulating pink-pigmented facultative Methylobacterium sp. with a functional nifH gene, World J Microbiol Biotechnol, 22 (2006) 1381-1384.
    • (2006) World J Microbiol Biotechnol , vol.22 , pp. 1381-1384
    • Raja, P.1    Uma, S.2    Sundaram, S.P.3
  • 25
    • 0041902284 scopus 로고    scopus 로고
    • Application of PCR fingerprinting techniques for identification and discrimination of Salmonella isolates
    • Tikko A, Tripathi A K, Verma S C, Agarwal N, Nath G, Application of PCR fingerprinting techniques for identification and discrimination of Salmonella isolates, Curr Sci, 80 (2001) 1049-1052. (Pubitemid 33620222)
    • (2001) Current Science , vol.80 , Issue.8 , pp. 1049-1052
    • Tikoo, A.1    Tripathi, A.K.2    Verma, S.C.3    Agrawal, N.4    Nath, G.5
  • 26
    • 30744441664 scopus 로고    scopus 로고
    • Evaluation of amplified ribosomal DNA restriction analysis (ARDRA) and species-specific PCR for identification of Bifidobacterium species
    • Krizova J, Spanova A & Rittich B, Evaluation of amplified ribosomal DNA restriction analysis (ARDRA) and species-specific PCR for identification of Bifidobacterium species, Syst Appl Microbiol, 29 (2006) 36-44.
    • (2006) Syst Appl Microbiol , vol.29 , pp. 36-44
    • Krizova, J.1    Spanova, A.2    Rittich, B.3
  • 27
    • 0031827865 scopus 로고    scopus 로고
    • Development of specific nested oligonucleotide PCR primers for the Streptococcus iniae 16S-23S ribosomal DNA intergenic spacer
    • Berridge B R, Fuller J D, De Azavado J, Low D E, Bercovier H & Frelier P F, Development of specific nested oligonucleotide PCR primers for the Streptococcus iniae 16S-23S ribosomal DNA intergenic spacer, J Clin Microbiol, 36 (1998) 2778-2781. (Pubitemid 28381001)
    • (1998) Journal of Clinical Microbiology , vol.36 , Issue.9 , pp. 2778-2781
    • Berridge, B.R.1    Fuller, J.D.2    De Azavedo, J.3    Low, D.E.4    Bercovier, H.5    Frelier, P.F.6
  • 28
    • 0035433191 scopus 로고    scopus 로고
    • Specific detection of Bradyrhizobium and Rhizobium strains colonizing rice (Oryza sativa) roots by 16S-23S ribosomal DNA intergenic spacer-targeted PCR
    • Tan Z, Hurek T, Vinuesa P, Muller P, Ladha J K & Reinhold-Hurek B, Specific detection of Bradyrhizobium and Rhizobium strains colonizing rice (Oryza sativa) roots by 16S-23S ribosomal DNA intergenic spacer-targeted PCR, Appl Environ Microbiol, 67 (2001) 3655-3664.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3655-3664
    • Tan, Z.1    Hurek, T.2    Vinuesa, P.3    Muller, P.4    Ladha, J.K.5    Reinhold-Hurek, B.6
  • 29
    • 33750546239 scopus 로고    scopus 로고
    • Development of a simple and rapid method based on polymerase chain reaction-based restriction fragment length polymorphism analysis to differentiate Helicobacter, Camphylobacter and Arcobacter species
    • Gonzalez A, Moreno Y, Gonzalez R, Hernandez J & Ferrus M A, Development of a simple and rapid method based on polymerase chain reaction-based restriction fragment length polymorphism analysis to differentiate Helicobacter, Camphylobacter and Arcobacter species, Curr Microbiol, 53 (2006) 416-421.
    • (2006) Curr Microbiol , vol.53 , pp. 416-421
    • Gonzalez, A.1    Moreno, Y.2    Gonzalez, R.3    Hernandez, J.4    Ferrus, M.A.5
  • 30
    • 0034460180 scopus 로고    scopus 로고
    • Evaluation of PCR-based methods for discrimination of Francisella species and subspecies and development of a specific PCR that distinguishes the two major subspecies of Francisella tularensis
    • Johansson A, Ibrahim A, Goransson I, Eriksson U, Gurycova I et al, Evaluation of PCR-based methods for discrimination of Francisella species and subspecies and development of a specific PCR that distinguishes the two major subspecies of Francisella tularensis, J Clin Microbiol, 38 (2000) 4180-4185. (Pubitemid 32233223)
    • (2000) Journal of Clinical Microbiology , vol.38 , Issue.11 , pp. 4180-4185
    • Johansson, A.1    Ibrahim, A.2    Goransson, I.3    Eriksson, U.4    Gurycova, D.5    Clarridge III, J.E.6    Sjostedt, A.7
  • 31
    • 0032983866 scopus 로고    scopus 로고
    • Genetic basis of entrobacterial repetitive intergenic consensus (ERIC)-PCR fingerprint pattern in Sinorhizobium meliloti and identification of S. meliloti employing PCR primers derived from an ERIC-PCR fragment
    • Niemann S, Dammann-Kalinowski T, Nagel A, Puhler A & Selbitschka W, Genetic basis of entrobacterial repetitive intergenic consensus (ERIC)-PCR fingerprint pattern in Sinorhizobium meliloti and identification of S. meliloti employing PCR primers derived from an ERIC-PCR fragment, Arch Microbiol, 172 (1999) 22-30.
    • (1999) Arch Microbiol , vol.172 , pp. 22-30
    • Niemann, S.1    Dammann-Kalinowski, T.2    Nagel, A.3    Puhler, A.4    Selbitschka, W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.