-
1
-
-
0035881732
-
Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer
-
Welsh, J. B.; Sapinoso, L. M.; Su, A. I.; Kern, S. G.; Wang-Rodriguez, J.; Moskaluk, C. A.; Frierson, H. F., Jr.; Hampton, G. M. Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer. Cancer Res., 2001, 61, 5974-5978
-
(2001)
Cancer Res.
, vol.61
, pp. 5974-5978
-
-
Welsh, J.B.1
Sapinoso, L.M.2
Su, A.I.3
Kern, S.G.4
Wang-Rodriguez, J.5
Moskaluk, C.A.6
Frierson Jr., H.F.7
Hampton, G.M.8
-
3
-
-
33947432483
-
Amplified in breast cancer 1 in human epidermal growth factor receptor - Positive tumors of tamoxifen-treated breast cancer patients
-
Kirkegaard, T.; McGlynn, L. M.; Campbell, F. M.; Muller, S.; Tovey, S. M.; Dunne, B.; Nielsen, K. V.; Cooke, T. G.; Bartlett, J. M. Amplified in breast cancer 1 in human epidermal growth factor receptor - positive tumors of tamoxifen-treated breast cancer patients. Clin. Cancer Res., 2007, 13, 1405-1411
-
(2007)
Clin. Cancer Res.
, vol.13
, pp. 1405-1411
-
-
Kirkegaard, T.1
McGlynn, L.M.2
Campbell, F.M.3
Muller, S.4
Tovey, S.M.5
Dunne, B.6
Nielsen, K.V.7
Cooke, T.G.8
Bartlett, J.M.9
-
4
-
-
36749025111
-
Recent advances in clinical oncoproteomics
-
Jain, K. K. Recent advances in clinical oncoproteomics. J. Buon., 2007, 12 (Suppl 1), S31-8.
-
(2007)
J. Buon.
, vol.12
, Issue.SUPPL. 1
-
-
Jain, K.K.1
-
5
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong, H.; Tombor, B.; Albert, R.; Oltvai, Z. N.; Barabasi, A. L. The large-scale organization of metabolic networks. Nature, 2000, 407, 651-654
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
6
-
-
0000645097
-
Generalization of topological indices
-
Estrada, E. Generalization of topological indices. Chem. Phys. Lett., 2001, 336, 248-252.
-
(2001)
Chem. Phys. Lett.
, vol.336
, pp. 248-252
-
-
Estrada, E.1
-
7
-
-
40549136471
-
Proteomics, networks and connectivity indices
-
González-Díaz, H.; González-Díaz, Y.; Santana, L.; Ubeira, F. M.; Uriarte, E. Proteomics, networks and connectivity indices. Proteomics, 2008, 8, 750-778.
-
(2008)
Proteomics
, vol.8
, pp. 750-778
-
-
González-Díaz, H.1
González-Díaz, Y.2
Santana, L.3
Ubeira, F.M.4
Uriarte, E.5
-
9
-
-
34547241472
-
Chemical Graph Theory and n-Center Electron Delocalization indices: A study on polycyclic aromatic hydrocarbons
-
Mandado, M.; Gonzáles-Moa, M. J.; Mosquera, R. A. Chemical Graph Theory and n-Center Electron Delocalization indices: a study on polycyclic aromatic hydrocarbons. J. Comput. Chem., 2007, 28, 1625-1633.
-
(2007)
J. Comput. Chem.
, vol.28
, pp. 1625-1633
-
-
Mandado, M.1
Gonzáles-Moa, M.J.2
Mosquera, R.A.3
-
10
-
-
60349124637
-
Discriminating Prostate Cancer Patients from control group with connectivity indices
-
González-Díaz, H.; Ferino, G.; Podda, G.; Uriarte, E. Discriminating Prostate Cancer Patients from control group with connectivity indices. ECSOC, 2007, 11, G1:1-10.
-
(2007)
ECSOC
, vol.11
, Issue.G1
, pp. 1-10
-
-
González-Díaz, H.1
Ferino, G.2
Podda, G.3
Uriarte, E.4
-
11
-
-
30344455624
-
Stochastic entropy QSAR for the in silico discovery of anticancer compounds: Prediction, synthesis, and in vitro assay of new purine carbanucleosides
-
González-Díaz, H.; Vina, D.; Santana, L.; de Clercq, E.; Uriarte, E. Stochastic entropy QSAR for the in silico discovery of anticancer compounds: prediction, synthesis, and in vitro assay of new purine carbanucleosides. Bioorg. Med. Chem., 2006, 14, 1095-1107
-
(2006)
Bioorg. Med. Chem.
, vol.14
, pp. 1095-1107
-
-
González-Díaz, H.1
Vina, D.2
Santana, L.3
De Clercq, E.4
Uriarte, E.5
-
12
-
-
0025021607
-
Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady-state systems
-
Chou, K. C. Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady-state systems. Biophys. Chem., 1990, 35, 1-24.
-
(1990)
Biophys. Chem.
, vol.35
, pp. 1-24
-
-
Chou, K.C.1
-
13
-
-
0024971003
-
Graphical rules in steady and non-steady enzyme kinetics
-
Chou, K. C. Graphical rules in steady and non-steady enzyme kinetics. J. Biol. Chem., 1989, 264, 12074-12079.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 12074-12079
-
-
Chou, K.C.1
-
14
-
-
0025021607
-
Review: Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady state systems
-
Chou, K. C. Review: Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady state systems. Biophys. Chem., 1990, 35, 1-24.
-
(1990)
Biophys. Chem.
, vol.35
, pp. 1-24
-
-
Chou, K.C.1
-
15
-
-
12744279642
-
Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
-
Chou, K. C. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics, 2005, 21, 10-19
-
(2005)
Bioinformatics
, vol.21
, pp. 10-19
-
-
Chou, K.C.1
-
16
-
-
0019021450
-
Graphical rules for enzyme-catalyzed rate laws
-
Chou, K. C.; Forsen, S. Graphical rules for enzyme-catalyzed rate laws. Biochem. J., 1980, 187, 829-835.
-
(1980)
Biochem. J.
, vol.187
, pp. 829-835
-
-
Chou, K.C.1
Forsen, S.2
-
17
-
-
0034266159
-
On 3-D graphical representation of DNA primary sequences and their numerical characterization
-
Randič, M.; Vračko, M.; Nandy, A.; Basak, S. C. On 3-D graphical representation of DNA primary sequences and their numerical characterization. J. Chem. Inf. Comput. Sci., 2000, 40, 1235-1244.
-
(2000)
J. Chem. Inf. Comput. Sci.
, vol.40
, pp. 1235-1244
-
-
Randič, M.1
Vračko, M.2
Nandy, A.3
Basak, S.C.4
-
18
-
-
34447254270
-
Medicinal chemistry and bioinformatics - Current trends in drugs discovery with networks topological indices
-
González-Díaz, H.; Vilar, S.; Santana, L.; Uriarte, E. Medicinal chemistry and bioinformatics - current trends in drugs discovery with networks topological indices. Curr. Top. Med. Chem., 2007, 7, 1025-1039
-
(2007)
Curr. Top. Med. Chem.
, vol.7
, pp. 1025-1039
-
-
González-Díaz, H.1
Vilar, S.2
Santana, L.3
Uriarte, E.4
-
19
-
-
0042730045
-
Application of a novel graph-theoretic folding degree index to the study of steroid-DB3 antibody binding affinity
-
Estrada, E. Application of a novel graph-theoretic folding degree index to the study of steroid-DB3 antibody binding affinity. Comput. Biol. Chem., 2003 27, 305-313.
-
(2003)
Comput. Biol. Chem.
, vol.27
, pp. 305-313
-
-
Estrada, E.1
-
20
-
-
3142704623
-
New 2D graphical representation of DNA sequences
-
Liao, B.; Wang, T. M. New 2D graphical representation of DNA sequences. J. Comput. Chem., 2004, 25, 1364-1368
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1364-1368
-
-
Liao, B.1
Wang, T.M.2
-
21
-
-
3242792729
-
Review: Structural bioinformatics and its impact to biomedical science
-
Chou, K. C. Review: structural bioinformatics and its impact to biomedical science. Curr. Med. Chem., 2004, 11, 2105-2134
-
(2004)
Curr. Med. Chem.
, vol.11
, pp. 2105-2134
-
-
Chou, K.C.1
-
22
-
-
12844277442
-
Predicting multiple drugs side effects with a general drug-target interaction thermodynamic Markov model
-
DOI 10.1016/j.bmc.2004.11.030, PII S0968089604009101
-
González-Díaz, H.; Cruz-Monteagudo, M.; Molina, R.; Tenorio, E.; Uriarte, E. Predicting multiple drugs side effects with a general drug-target interaction thermodynamic Markov model. Bioorg. Med. Chem., 2005, 13, 1119-1129 (Pubitemid 40164596)
-
(2005)
Bioorganic and Medicinal Chemistry
, vol.13
, Issue.4
, pp. 1119-1129
-
-
Gonzalez-Diaz, H.1
Cruz-Monteagudo, M.2
Molina, R.3
Tenorio, E.4
Uriarte, E.5
-
23
-
-
16844375302
-
Modeling biochemical networks: A cellular-automata approach
-
Kier, L. B.; Bonchev, D.; Buck, G. A. Modeling biochemical networks: a cellular-automata approach. Chem. Biodivers, 2005, 2, 233-243
-
(2005)
Chem. Biodivers
, vol.2
, pp. 233-243
-
-
Kier, L.B.1
Bonchev, D.2
Buck, G.A.3
-
24
-
-
18844426012
-
Hydrolysis kinetics and QSAR investigation of soft antimicrobial agents
-
Loftsson, T.; Thorsteinsson, T.; Masson, M. Hydrolysis kinetics and QSAR investigation of soft antimicrobial agents. J. Pharm. Pharmacol., 2005, 57, 721-727
-
(2005)
J. Pharm. Pharmacol.
, vol.57
, pp. 721-727
-
-
Loftsson, T.1
Thorsteinsson, T.2
Masson, M.3
-
25
-
-
1842430781
-
A systematic approach to simulating metabolism in computational toxicology. I. The TIMES heuristic modelling framework
-
Mekenyan, O. G.; Dimitrov, S. D.; Pavlov, T. S.; Veith, G. D. A systematic approach to simulating metabolism in computational toxicology. I. The TIMES heuristic modelling framework. Curr. Pharm. Des., 2004, 10, 1273-1293
-
(2004)
Curr. Pharm. Des.
, vol.10
, pp. 1273-1293
-
-
Mekenyan, O.G.1
Dimitrov, S.D.2
Pavlov, T.S.3
Veith, G.D.4
-
26
-
-
14944348527
-
A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction
-
Rush, T. S., 3rd; Grant, J. A.; Mosyak, L.; Nicholls, A. A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction. J. Med. Chem., 2005, 48, 1489-1495
-
(2005)
J. Med. Chem.
, vol.48
, pp. 1489-1495
-
-
Rush III, T.S.1
Grant, J.A.2
Mosyak, L.3
Nicholls, A.4
-
27
-
-
32344433486
-
Predicting protein-protein interactions from sequences in a hybridization space
-
Chou, K. C.; Cai, Y. D. Predicting protein-protein interactions from sequences in a hybridization space. J. Proteome Res., 2006, 5, 316-322
-
(2006)
J. Proteome Res.
, vol.5
, pp. 316-322
-
-
Chou, K.C.1
Cai, Y.D.2
-
28
-
-
28944450149
-
Prediction of protein-protein interactions using random decision forest framework
-
Chen, X. W.; Liu, M. Prediction of protein-protein interactions using random decision forest framework. Bioinformatics, 2005, 21, 4394-4400
-
(2005)
Bioinformatics
, vol.21
, pp. 4394-4400
-
-
Chen, X.W.1
Liu, M.2
-
29
-
-
0038185277
-
A novel shape complementarity scoring function for protein-protein docking
-
Chen, R.; Weng, Z. A novel shape complementarity scoring function for protein-protein docking. Proteins, 2003, 51, 397-408.
-
(2003)
Proteins
, vol.51
, pp. 397-408
-
-
Chen, R.1
Weng, Z.2
-
30
-
-
34250820586
-
Complexity analysis of yeast proteome network
-
Bonchev, D. Complexity analysis of yeast proteome network. Chem. Biodivers., 2004 1, 312-326
-
(2004)
Chem. Biodivers.
, vol.1
, pp. 312-326
-
-
Bonchev, D.1
-
31
-
-
1042298842
-
From large networks to small molecules
-
J.F. Sharom, D. S. B., M. Tyers. From large networks to small molecules. Curr. Opin. Chem. Biol., 2004, 8, 81-90.
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, pp. 81-90
-
-
Sharom, J.F.1
B, D.S.2
Tyers, M.3
-
32
-
-
0026735982
-
Computer graphics presentations and analysis of hydrogen bonds from molecular dynamics simulation
-
107-109
-
Shibata, M.; Zielinski, T. J. Computer graphics presentations and analysis of hydrogen bonds from molecular dynamics simulation. J. Mol. Graph, 1992, 10, 88-95, 107-109
-
(1992)
J. Mol. Graph
, vol.10
, pp. 88-95
-
-
Shibata, M.1
Zielinski, T.J.2
-
33
-
-
0038137445
-
Reliability of gaussian based ab initio methods in the calculations of HClO and HOCl decomposition channels
-
Jalbout, A. F.; Solimannejad, M. Reliability of gaussian based ab initio methods in the calculations of HClO and HOCl decomposition channels. J. Mol. Struct., 2003, 626, 87-90.
-
(2003)
J. Mol. Struct.
, vol.626
, pp. 87-90
-
-
Jalbout, A.F.1
Solimannejad, M.2
-
34
-
-
42149097173
-
Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws: New methods based on directed graphs
-
Andraos, J. Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws: new methods based on directed graphs. Can. J. Chem., 2008, 86, 342-357.
-
(2008)
Can. J. Chem.
, vol.86
, pp. 342-357
-
-
Andraos, J.1
-
35
-
-
0027054450
-
Diagrammatization of codon usage in 339 HIV proteins and its biological implication
-
Chou, K. C.; Zhang, C. T. Diagrammatization of codon usage in 339 HIV proteins and its biological implication. AIDS Res. Hum. Retroviruses, 1992, 8, 1967-1976.
-
(1992)
AIDS Res. Hum. Retroviruses
, vol.8
, pp. 1967-1976
-
-
Chou, K.C.1
Zhang, C.T.2
-
36
-
-
36249019849
-
New 3D graphical representation of DNA sequence based on dual nucleotides
-
Qi, X. Q.; Wen, J.; Qi, Z. H. New 3D graphical representation of DNA sequence based on dual nucleotides. J. Theor. Biol., 2007, 249, 681-690
-
(2007)
J. Theor. Biol.
, vol.249
, pp. 681-690
-
-
Qi, X.Q.1
Wen, J.2
Qi, Z.H.3
-
37
-
-
33745892626
-
Coronavirus phylogeny based on 2D graphical representation of DNA sequence
-
Liao, B.; Xiang, X.; Zhu, W. Coronavirus phylogeny based on 2D graphical representation of DNA sequence. J. Comput. Chem., 2006, 27, 1196-1202.
-
(2006)
J. Comput. Chem.
, vol.27
, pp. 1196-1202
-
-
Liao, B.1
Xiang, X.2
Zhu, W.3
-
38
-
-
0033628753
-
Condensed representation of DNA primary sequences
-
Randic, M. Condensed representation of DNA primary sequences. J. Chem. Inf. Comput. Sci., 2000, 40, 50-56
-
(2000)
J. Chem. Inf. Comput. Sci.
, vol.40
, pp. 50-56
-
-
Randic, M.1
-
39
-
-
0037363676
-
On a four-dimensional representation of DNA primary sequences
-
Randic, M.; Balaban, A. T. On a four-dimensional representation of DNA primary sequences. J. Chem. Inf. Comput. Sci., 2003, 43, 532-539
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 532-539
-
-
Randic, M.1
Balaban, A.T.2
-
40
-
-
6344252814
-
A topological sub-structural approach for predicting human intestinal absorption of drugs
-
Perez, M. A.; Sanz, M. B.; Torres, L. R.; Avalos, R. G.; Gonzalez, M. P.; Diaz, H. G. A topological sub-structural approach for predicting human intestinal absorption of drugs. Eur. J. Med. Chem., 2004, 39, 905-916
-
(2004)
Eur. J. Med. Chem.
, vol.39
, pp. 905-916
-
-
Perez, M.A.1
Sanz, M.B.2
Torres, L.R.3
Avalos, R.G.4
Gonzalez, M.P.5
Diaz, H.G.6
-
41
-
-
31444455638
-
Novel 2D maps and coupling numbers for protein sequences. The first QSAR study of polygalacturonases; isolation and prediction of a novel sequence from Psidium guajava L
-
Agüero-Chapin, G.; Gonzalez-Diaz, H.; Molina, R.; Varona-Santos, J.; Uriarte, E.; Gonzalez-Diaz, Y. Novel 2D maps and coupling numbers for protein sequences. The first QSAR study of polygalacturonases; isolation and prediction of a novel sequence from Psidium guajava L. FEBS Lett., 2006, 580 723-730.
-
(2006)
FEBS Lett.
, vol.580
, pp. 723-730
-
-
Agüero-Chapin, G.1
Gonzalez-Diaz, H.2
Molina, R.3
Varona-Santos, J.4
Uriarte, E.5
Gonzalez-Diaz, Y.6
-
44
-
-
8544273215
-
QSAR study using topological indices for inhibition of carbonic anhydrase II by sulfanilamides and Schiff bases
-
Balaban, A. T.; Basak, S. C.; Beteringhe, A.; Mills, D.; Supuran, C. T. QSAR study using topological indices for inhibition of carbonic anhydrase II by sulfanilamides and Schiff bases. Mol. Divers, 2004, 8, 401-412
-
(2004)
Mol. Divers
, vol.8
, pp. 401-412
-
-
Balaban, A.T.1
Basak, S.C.2
Beteringhe, A.3
Mills, D.4
Supuran, C.T.5
-
45
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi, A. L.; Oltvai, Z. N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet., 2004, 5, 101-113
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
46
-
-
17844365562
-
Sociology. Network theory-the emergence of the creative enterprise
-
Barabasi, A. L. Sociology. Network theory-the emergence of the creative enterprise. Science, 2005, 308, 639-641
-
(2005)
Science
, vol.308
, pp. 639-641
-
-
Barabasi, A.L.1
-
47
-
-
44649104406
-
Using spectral moments of spiral networks based on PSA/mass spectra outcomes to derive quantitative proteome-disease relationships (QPDRs) and predicting prostate cancer
-
Ferino, G.; Gonzalez-Diaz, H.; Delogu, G.; Podda, G.; Uriarte, E. Using spectral moments of spiral networks based on PSA/mass spectra outcomes to derive quantitative proteome-disease relationships (QPDRs) and predicting prostate cancer. Biochem. Biophys. Res. Commun., 2008, 372, 320-325
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.372
, pp. 320-325
-
-
Ferino, G.1
Gonzalez-Diaz, H.2
Delogu, G.3
Podda, G.4
Uriarte, E.5
-
48
-
-
40549136471
-
Proteomics, networks and connectivity indices
-
Gonzalez-Diaz, H.; Gonzalez-Diaz, Y.; Santana, L.; Ubeira, F. M.; Uriarte, E. Proteomics, networks and connectivity indices. Proteomics, 2008, 8, 750-778
-
(2008)
Proteomics
, vol.8
, pp. 750-778
-
-
Gonzalez-Diaz, H.1
Gonzalez-Diaz, Y.2
Santana, L.3
Ubeira, F.M.4
Uriarte, E.5
-
49
-
-
60749111710
-
Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices
-
Munteanu, C. R.; Magalhaes, A. L.; Uriarte, E.; Gonzalez-Diaz, H. Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices. J. Theor. Biol., 2009, 257, 303-311
-
(2009)
J. Theor. Biol.
, vol.257
, pp. 303-311
-
-
Munteanu, C.R.1
Magalhaes, A.L.2
Uriarte, E.3
Gonzalez-Diaz, H.4
-
50
-
-
70350187090
-
A network-QSAR model for prediction of genetic-component biomarkers in human colorectal cancer
-
Vilar, S.; Gonzalez-Diaz, H.; Santana, L.; Uriarte, E. A network-QSAR model for prediction of genetic-component biomarkers in human colorectal cancer. J. Theor. Biol., 2009, 261, 449-458
-
(2009)
J. Theor. Biol.
, vol.261
, pp. 449-458
-
-
Vilar, S.1
Gonzalez-Diaz, H.2
Santana, L.3
Uriarte, E.4
-
51
-
-
57049145806
-
QSAR model for alignment-free prediction of human breast cancer biomarkers based on electrostatic potentials of protein pseudofolding HPlattice networks
-
Vilar, S.; Gonzalez-Diaz, H.; Santana, L.; Uriarte, E. QSAR model for alignment-free prediction of human breast cancer biomarkers based on electrostatic potentials of protein pseudofolding HPlattice networks. J. Comput. Chem., 2008, 29, 2613-2622
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 2613-2622
-
-
Vilar, S.1
Gonzalez-Diaz, H.2
Santana, L.3
Uriarte, E.4
-
52
-
-
72449163200
-
-
Cho, W.C.S.; Ed.; Springer Science+Business Media B.V.
-
González-Díaz, H.; Ferino, G.; Munteanu, C. R.; Vilar, S.; Uriarte, E. In An Omics Perspective of Cancer, Cho, W.C.S.; Ed.; Springer Science+Business Media B.V., 2009.
-
(2009)
An Omics Perspective of Cancer
-
-
González-Díaz, H.1
Ferino, G.2
Munteanu, C.R.3
Vilar, S.4
Uriarte, E.5
-
53
-
-
40549145187
-
Discriminating Prostate Cancer Patients from control group with connectivity indices
-
González-Díaz, H.; Ferino, G.; Podda, G.; Uriarte, E. Discriminating Prostate Cancer Patients from control group with connectivity indices. ECSOC, 2008, 12, G1:1-10.
-
(2008)
ECSOC
, vol.12
, Issue.G1
, pp. 1-10
-
-
González-Díaz, H.1
Ferino, G.2
Podda, G.3
Uriarte, E.4
-
54
-
-
77953319430
-
-
Mitchem, B.H.; Sharnham, Ch. L.; Eds. Nova Science Publisher: NY
-
Ferino, G.; Delogu, G.; Podda, G.; Uriarte, E; González- Díaz, H. Quantitative Proteome-Disease Relationships (QPDRs) in clinical chemistry: prediction of prostate cancer with spectral moments of PSA/MS star networks, in clinical chemistry research. Mitchem, B.H.; Sharnham, Ch. L.; Eds. Nova Science Publisher: NY 2009.
-
(2009)
Quantitative Proteome-Disease Relationships (QPDRs) in Clinical Chemistry: Prediction of Prostate Cancer with Spectral Moments of PSA/MS Star Networks, in Clinical Chemistry Research
-
-
Ferino, G.1
Delogu, G.2
Podda, G.3
Uriarte, E.4
González-Díaz, H.5
-
55
-
-
0001833451
-
-
Manhnhold, R.; Krogsgaard-Larsen, P.; Timmerman, H.; Van Waterbeemd, H.; Eds.; Wiley-VCH: New York
-
Van Waterbeemd, H. In Method and Principles in Medicinal Chemistry, Manhnhold, R.; Krogsgaard-Larsen, P.; Timmerman, H.; Van Waterbeemd, H.; Eds.; Wiley-VCH: New York, 1995; Vol. 2, pp. 283-293.
-
(1995)
Method and Principles in Medicinal Chemistry
, vol.2
, pp. 283-293
-
-
Van Waterbeemd, H.1
-
57
-
-
0345040882
-
Support vector machine applications in bioinformatics
-
Byvatov, E.; Schneider, G. Support vector machine applications in bioinformatics. Appl. Bioinformatics, 2003, 2, 67-77.
-
(2003)
Appl. Bioinformatics
, vol.2
, pp. 67-77
-
-
Byvatov, E.1
Schneider, G.2
-
58
-
-
24644483692
-
Toward a theory of evolutionary computation
-
Eberbach, E. Toward a theory of evolutionary computation. Biosystems, 2005, 82, 1-19.
-
(2005)
Biosystems
, vol.82
, pp. 1-19
-
-
Eberbach, E.1
-
59
-
-
0344861965
-
Model selection methodology in supervised learning with evolutionary computation
-
Rowland, J. J. Model selection methodology in supervised learning with evolutionary computation. Biosystems, 2003, 72, 187-196
-
(2003)
Biosystems
, vol.72
, pp. 187-196
-
-
Rowland, J.J.1
-
60
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Ashburner, M.; Ball, C. A.; Blake, J. A.; Botstein, D.; Butler, H.; Cherry, J. M.; Davis, A. P.; Dolinski, K.; Dwight, S. S.; Eppig, J. T. Gene Ontology: tool for the unification of biology. Nat. Genet., 2000, 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
61
-
-
22144465702
-
-
Springer, USA
-
Gómez-Pérez, A.; Fernández-López, M.; Corcho, O. Ontological Engineering: With Examples from the Areas of Knowledge Management, E-Commerce and the Semantic Web. Springer, USA, 2004.
-
(2004)
Ontological Engineering: Wth Examples from the Areas of Knowledge Management, E-Commerce and the Semantic Web
-
-
Gómez-Pérez, A.1
Fernández-López, M.2
Corcho, O.3
-
62
-
-
58149365542
-
Toward principles for the design of ontologies used for knowledge sharing
-
Gruber, T. R. Toward principles for the design of ontologies used for knowledge sharing. Int. J. Hum. Comput. Stud., 1995, 43, 907-928.
-
(1995)
Int. J. Hum. Comput. Stud.
, vol.43
, pp. 907-928
-
-
Gruber, T.R.1
-
63
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner, M.; Ball, C. A.; Blake, J. A.; Botstein, D.; Butler, H.; Cherry, J. M.; Davis, A. P.; Dolinski, K.; Dwight, S. S.; Eppig, J. T.; Harris, M. A.; Hill, D. P.; Issel-Tarver, L.; Kasarskis, A.; Lewis, S.; Matese, J. C.; Richardson, J. E.; Ringwald, M.; Rubin, G. M.; Sherlock, G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 2000, 25, 25-29
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
65
-
-
33646238929
-
Methods in biomedical ontology
-
Yu, A. C. Methods in biomedical ontology. J. Biomed. Inform., 2006, 39, 252-266.
-
(2006)
J. Biomed. Inform.
, vol.39
, pp. 252-266
-
-
Yu, A.C.1
-
66
-
-
0026219884
-
Enabling technology for knowledge sharing
-
Neches, R.; Fikes, R.; Finin, T. W.; Gruber, T. R.; Patil, R.; Senator, T. E.; Swartout, W. R. Enabling technology for knowledge sharing. AI Magazine, 1991, 12, 36-56.
-
(1991)
AI Magazine
, vol.12
, pp. 36-56
-
-
Neches, R.1
Fikes, R.2
Finin, T.W.3
Gruber, T.R.4
Patil, R.5
Senator, T.E.6
Swartout, W.R.7
-
67
-
-
35148839490
-
A translation approach to portable ontology specifications
-
Gruber, T. R. A translation approach to portable ontology specifications. Knowledge Acquisition, 1993, 5, 199-220.
-
(1993)
Knowledge Acquisition
, vol.5
, pp. 199-220
-
-
Gruber, T.R.1
-
68
-
-
0032026995
-
Knowledge engineering: Principles and methods
-
Studer, R.; Benjamins, V. R.; Fensel, D. Knowledge engineering: principles and methods. Data Knowledge Eng., 1998, 25, 161-197.
-
(1998)
Data Knowledge Eng.
, vol.25
, pp. 161-197
-
-
Studer, R.1
Benjamins, V.R.2
Fensel, D.3
-
70
-
-
22044433259
-
Relations in biomedical ontologies
-
Smith, B.; Ceusters, W.; Klagges, B.; Köhler, J.; Kumar, A.; Lomax, J.; Mungall, C.; Neuhaus, F.; Rector, A.; Rosse, C. Relations in biomedical ontologies. Genome Biol., 2005, 6, R46.
-
(2005)
Genome Biol.
, vol.6
-
-
Smith, B.1
Ceusters, W.2
Klagges, B.3
Köhler, J.4
Kumar, A.5
Lomax, J.6
Mungall, C.7
Neuhaus, F.8
Rector, A.9
Rosse, C.10
-
72
-
-
11244300620
-
Ontologies and semantics for seamless connectivity
-
Uschold, M.; Gruninger, M. Ontologies and semantics for seamless connectivity. ACM SIGMOD Record, 2004, 33, 58-64.
-
(2004)
ACM SIGMOD Record
, vol.33
, pp. 58-64
-
-
Uschold, M.1
Gruninger, M.2
-
73
-
-
84874179208
-
-
Accessed February 22, 2010
-
OWL Web Ontology Language. Overview. http://www.w3.org/TR/owl-features/ (Accessed February 22, 2010).
-
Web Ontology Language. Overview
-
-
-
74
-
-
0037805574
-
On ontologies for biologists: The Gene Ontology - Untangling the web
-
Ashburner, M.; Lewis, S. On ontologies for biologists: the Gene Ontology - untangling the web. Novartis Found Symposium, 2002, 247, 66-80.
-
(2002)
Novartis Found Symposium
, vol.247
, pp. 66-80
-
-
Ashburner, M.1
Lewis, S.2
-
75
-
-
0034332545
-
Ontology-based knowledge representation for bioinformatics
-
Stevens, R.; Goble, C. A.; Bechhofer, S. Ontology-based knowledge representation for bioinformatics. Brief. Bioinform., 2000, 1, 398-414.
-
(2000)
Brief. Bioinform.
, vol.1
, pp. 398-414
-
-
Stevens, R.1
Goble, C.A.2
Bechhofer, S.3
-
76
-
-
33751430005
-
An agent- and ontology-based system for integrating public gene, protein, and disease databases
-
Alonso-Calvo, R.; Maojo, V.; Billhardt, H.; Martin-Sanchez, F.; Garcia-Remesal, M.; Perez-Rey, D. An agent- and ontology-based system for integrating public gene, protein, and disease databases. J. Biomed. Inform., 2007, 40, 17-29.
-
(2007)
J. Biomed. Inform.
, vol.40
, pp. 17-29
-
-
Alonso-Calvo, R.1
Maojo, V.2
Billhardt, H.3
Martin-Sanchez, F.4
Garcia-Remesal, M.5
Perez-Rey, D.6
-
77
-
-
33646854254
-
Designing new methodologies for integrating biomedical information in clinical trials
-
Maojo, V.; Garcia-Remesal, M.; Billhardt, H.; Alonso-Calvo, R.; Perez-Rey, D.; Martin-Sanchez, F. Designing new methodologies for integrating biomedical information in clinical trials. Methods Inf. Med., 2006, 45, 180-185 (Pubitemid 44047761)
-
(2006)
Methods of Information in Medicine
, vol.45
, Issue.2
, pp. 180-185
-
-
Maojo, V.1
Garcia-Remesal, M.2
Billhardt, H.3
Alonso-Calvo, R.4
Perez-Rey, D.5
Martin-Sanchez, F.6
-
78
-
-
70449627140
-
BIRI: A new approach for automatically discovering and indexing available public bioinformatics resources from the literature
-
de la Calle, G.; Garcia-Remesal, M.; Chiesa, S.; de la Iglesia, D.; Maojo, V. BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature. BMC Bioinformatics, 2009, 10, 320.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 320
-
-
De La Calle, G.1
Garcia-Remesal, M.2
Chiesa, S.3
De La Iglesia, D.4
Maojo, V.5
-
79
-
-
2542612214
-
Bio-ontologies - Fast and furious
-
Blake, J. Bio-ontologies - fast and furious. Nat. Biotechnol., 2004, 22, 773-774.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 773-774
-
-
Blake, J.1
-
80
-
-
34648819801
-
Annotation and query of tissue microarray data using the NCI Thesaurus
-
Shah, N. H.; Rubin, D. L.; Espinosa, I.; Montgomery, K.; Musen, M. A. Annotation and query of tissue microarray data using the NCI Thesaurus. BMC Bioinformatics, 2007, 8, 296.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 296
-
-
Shah, N.H.1
Rubin, D.L.2
Espinosa, I.3
Montgomery, K.4
Musen, M.A.5
-
81
-
-
67849128700
-
BioPortal: Ontologies and integrated data resources at the click of a mouse
-
Noy, N. F.; Shah, N. H.; Whetzel, P. L.; Dai, B.; Dorf, M.; Griffith, N.; Jonquet, C.; Rubin, D. L.; Storey, M. A.; Chute, C. G. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res., 2009, 37, W170-W173.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Noy, N.F.1
Shah, N.H.2
Whetzel, P.L.3
Dai, B.4
Dorf, M.5
Griffith, N.6
Jonquet, C.7
Rubin, D.L.8
Storey, M.A.9
Chute, C.G.10
-
82
-
-
37349050789
-
Computational analysis of biological functions and pathways col lectively targeted by co-expressed microRNAs in cancer
-
Gusev, Y.; Schmittgen, T.; Lerner, M.; Postier, R.; Brackett, D. Computational analysis of biological functions and pathways col lectively targeted by co-expressed microRNAs in cancer. BMC Bioinformatics, 2007, 8, S16.
-
(2007)
BMC Bioinformatics
, vol.8
-
-
Gusev, Y.1
Schmittgen, T.2
Lerner, M.3
Postier, R.4
Brackett, D.5
-
83
-
-
33645277092
-
The MGED Ontology: A resource for semantics-based description of microarray experiments
-
Whetzel, P. L.; Parkinson, H.; Causton, H. C.; Fan, L.; Fostel, J.; Fragoso, G.; Game, L.; Heiskanen, M.; Morrison, N.; Rocca-Serra, P.; Sansone, S. A.; Taylor, C.; White, J.; Stoeckert, C. J., Jr. The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics, 2006, 22, 866-873
-
(2006)
Bioinformatics
, vol.22
, pp. 866-873
-
-
Whetzel, P.L.1
Parkinson, H.2
Causton, H.C.3
Fan, L.4
Fostel, J.5
Fragoso, G.6
Game, L.7
Heiskanen, M.8
Morrison, N.9
Rocca-Serra, P.10
Sansone, S.A.11
Taylor, C.12
White, J.13
Stoeckert Jr., C.J.14
-
84
-
-
35948989284
-
The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
-
Smith, B.; Ashburner, M.; Rosse, C.; Bard, J.; Bug, W.; Ceusters, W.; Goldberg, L. J.; Eilbeck, K.; Ireland, A.; Mungall, C. J. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol., 2007, 25, 1251.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1251
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bug, W.5
Ceusters, W.6
Goldberg, L.J.7
Eilbeck, K.8
Ireland, A.9
Mungall, C.J.10
-
85
-
-
77953316463
-
-
Accessed February 19, 2010
-
National Center for Biomedical Ontology. BioPortal Website. http://bioportal.bioontology.org (Accessed February 19, 2010).
-
-
-
-
86
-
-
19944429228
-
Combined target-based and ligand-based drug design approach as a tool to define a novel 3D-pharmacophore model of human A3 adenosine receptor antagonists: Pyrazolo[4,3-e]1,2,4-triazolo[1,5-c]pyrimidine derivatives as a key study
-
Moro, S.; Braiuca, P.; Deflorian, F.; Ferrari, C.; Pastorin, G.; Cacciari, B.; Baraldi, P. G.; Varani, K.; Borea, P. A.; Spalluto, G. Combined target-based and ligand-based drug design approach as a tool to define a novel 3D-pharmacophore model of human A3 adenosine receptor antagonists: pyrazolo[4,3-e]1,2,4-triazolo[1,5-c]pyrimidine derivatives as a key study. J. Med. Chem., 2005, 48, 152-162
-
(2005)
J. Med. Chem.
, vol.48
, pp. 152-162
-
-
Moro, S.1
Braiuca, P.2
Deflorian, F.3
Ferrari, C.4
Pastorin, G.5
Cacciari, B.6
Baraldi, P.G.7
Varani, K.8
Borea, P.A.9
Spalluto, G.10
-
87
-
-
77953307213
-
-
Enterprise Vocabulary Services (Accessed February 17, 2010)
-
National Cancer Institute. Enterprise Vocabulary Services. http://www.cancer.gov/cancertopics/terminologyresources (Accessed February 17, 2010).
-
-
-
-
88
-
-
0345863927
-
The Unified Medical Language System (UMLS): Integrating biomedical terminology
-
Bodenreider, O. The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res., 2004, 32, 267-270.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 267-270
-
-
Bodenreider, O.1
-
89
-
-
11844269189
-
Synthesis, biological evaluation, and molecular modeling of novel thioacridone derivatives related to the anticancer alkaloid acronycine
-
Dheyongera, J. P.; Geldenhuys, W. J.; Dekker, T. G.; Van der Schyf, C. J. Synthesis, biological evaluation, and molecular modeling of novel thioacridone derivatives related to the anticancer alkaloid acronycine. Bioorg. Med. Chem., 2005, 13, 689-698
-
(2005)
Bioorg. Med. Chem.
, vol.13
, pp. 689-698
-
-
Dheyongera, J.P.1
Geldenhuys, W.J.2
Dekker, T.G.3
Van Der Schyf, C.J.4
-
90
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E. S.; Linton, L. M.; Birren, B.; Nusbaum, C.; Zody, M. C.; Baldwin, J.; Devon, K.; Dewar, K.; Doyle, M.; FitzHugh, W. Initial sequencing and analysis of the human genome. Nature, 2001, 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
-
91
-
-
64749094310
-
The cancer genome
-
Stratton, M. R.; Campbell, P. J.; Futreal, P. A. The cancer genome. Nature, 2009, 458, 719-724.
-
(2009)
Nature
, vol.458
, pp. 719-724
-
-
Stratton, M.R.1
Campbell, P.J.2
Futreal, P.A.3
-
92
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa, M.; Goto, S.; Furumichi, M.; Tanabe, M.; Hirakawa, M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res., 2010, 38, D355-D360.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
93
-
-
77953298370
-
-
Available from: (Accessed February 19, 2010)
-
Pathguide: the pathway resource list. Available from: http://www.pathguide.org (Accessed February 19, 2010).
-
-
-
-
94
-
-
21544461263
-
PAX of mind for pathway researchers
-
Luciano, J. S. PAX of mind for pathway researchers. Drug Discov. Today, 2005, 10, 937-942.
-
(2005)
Drug Discov. Today
, vol.10
, pp. 937-942
-
-
Luciano, J.S.1
-
95
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa, M.; Goto, S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 2000, 28, 27-30.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
96
-
-
38549117301
-
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
-
Caspi, R.; Foerster, H.; Fulcher, C. A.; Kaipa, P.; Krummenacker, M.; Latendresse, M.; Paley, S.; Rhee, S. Y.; Shearer, A. G.; Tissier, C. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res., 2008, 36, D623-D631.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
Kaipa, P.4
Krummenacker, M.5
Latendresse, M.6
Paley, S.7
Rhee, S.Y.8
Shearer, A.G.9
Tissier, C.10
-
97
-
-
11044233666
-
Ortho effects in quantitative structure-activity relationships for acetylcholinesterase inhibition by aryl carbamates
-
Lin, G.; Liu, Y. C.; Lin, Y. F.; Wu, Y. G. Ortho effects in quantitative structure-activity relationships for acetylcholinesterase inhibition by aryl carbamates. J. Enzyme Inhib. Med. Chem., 2004, 19, 395-401.
-
(2004)
J. Enzyme Inhib. Med. Chem.
, vol.19
, pp. 395-401
-
-
Lin, G.1
Liu, Y.C.2
Lin, Y.F.3
Wu, Y.G.4
-
98
-
-
13444259844
-
Reactome: A knowledgebase of biological pathways
-
Joshi-Tope, G.; Gillespie, M.; Vastrik, I.; D'Eustachio, P.; Schmidt, E.; de Bono, B.; Jassal, B.; Gopinath, G. R.; Wu, G. R.; Matthews, L. Reactome: a knowledgebase of biological pathways. Nucleic Acids Res., 2005, 33, D428-D432.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Joshi-Tope, G.1
Gillespie, M.2
Vastrik, I.3
D'Eustachio, P.4
Schmidt, E.5
De Bono, B.6
Jassal, B.7
Gopinath, G.R.8
Wu, G.R.9
Matthews, L.10
-
100
-
-
13444310497
-
The molecule role ontology: An ontology for annotation of signal transduction pathway molecules in the scientific literature
-
Yamamoto, S.; Asanuma, T.; Takagi, T.; Fukuda, K. I. The molecule role ontology: an ontology for annotation of signal transduction pathway molecules in the scientific literature. Comp. Funct. Genomics, 2004, 5, 528-536
-
(2004)
Comp. Funct. Genomics
, vol.5
, pp. 528-536
-
-
Yamamoto, S.1
Asanuma, T.2
Takagi, T.3
Fukuda, K.I.4
-
101
-
-
33846067524
-
PANTHER version 6: Protein sequence and function evolution data with expanded representation of biological pathways
-
Mi, H.; Guo, N.; Kejariwal, A.; Thomas, P. D. PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. Nucleic Acids Res., 2007, 35, D247-D252.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Mi, H.1
Guo, N.2
Kejariwal, A.3
Thomas, P.D.4
-
102
-
-
0035166913
-
GenMapDB: A database of mapped human BAC clones
-
Morley, M.; Arcaro, M.; Burdick, J.; Yonescu, R.; Reid, T.; Kirsch, I. R.; Cheung, V. G. GenMapDB: a database of mapped human BAC clones. Nucleic Acids Res., 2001, 29, 144-147.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 144-147
-
-
Morley, M.1
Arcaro, M.2
Burdick, J.3
Yonescu, R.4
Reid, T.5
Kirsch, I.R.6
Cheung, V.G.7
-
103
-
-
0036326896
-
PATIKA: An integrated visual environment for collaborative construction and analysis of cellular pathways
-
Demir, E.; Babur, O.; Dogrusoz, U.; Gursoy, A.; Nisanci, G.; Cetin-Atalay, R.; Ozturk, M. PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinformatics, 2002, 18, 996-1003.
-
(2002)
Bioinformatics
, vol.18
, pp. 996-1003
-
-
Demir, E.1
Babur, O.2
Dogrusoz, U.3
Gursoy, A.4
Nisanci, G.5
Cetin-Atalay, R.6
Ozturk, M.7
-
104
-
-
48449090785
-
KEGG Atlas mapping for global analysis of metabolic pathways
-
Okuda, S.; Yamada, T.; Hamajima, M.; Itoh, M.; Katayama, T.; Bork, P.; Goto, S.; Kanehisa, M. KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res., 2008, 36, W423-W426.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Okuda, S.1
Yamada, T.2
Hamajima, M.3
Itoh, M.4
Katayama, T.5
Bork, P.6
Goto, S.7
Kanehisa, M.8
-
105
-
-
33747139057
-
The outcomes of pathway database computations depend on pathway ontology
-
Green, M. L.; Karp, P. D. The outcomes of pathway database computations depend on pathway ontology. Nucleic Acids Res., 2006, 34, 3687-3697.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 3687-3697
-
-
Green, M.L.1
Karp, P.D.2
-
106
-
-
13444273396
-
The Rat Genome Database (RGD): Developments towards a phenome database
-
de La Cruz, N.; Bromberg, S.; Pasko, D.; Shimoyama, M.; Twigger, S.; Chen, J.; Chen, C. F.; Fan, C.; Foote, C.; Gopinath, G. R. The Rat Genome Database (RGD): developments towards a phenome database. Nucleic Acids Res., 2005, 33, D485-D491.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
De La Cruz, N.1
Bromberg, S.2
Pasko, D.3
Shimoyama, M.4
Twigger, S.5
Chen, J.6
Chen, C.F.7
Fan, C.8
Foote, C.9
Gopinath, G.R.10
-
107
-
-
18444394318
-
Rat Genome Database (RGD): Mapping disease onto the genome
-
Twigger, S.; Lu, J.; Shimoyama, M.; Chen, D.; Pasko, D.; Long, H.; Ginster, J.; Chen, C. F.; Nigam, R.; Kwitek, A.; Eppig, J.; Maltais, L.; Maglott, D.; Schuler, G.; Jacob, H.; Tonellato, P. J. Rat Genome Database (RGD): mapping disease onto the genome. Nucleic Acids Res., 2002, 30, 125-128
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 125-128
-
-
Twigger, S.1
Lu, J.2
Shimoyama, M.3
Chen, D.4
Pasko, D.5
Long, H.6
Ginster, J.7
Chen, C.F.8
Nigam, R.9
Kwitek, A.10
Eppig, J.11
Maltais, L.12
Maglott, D.13
Schuler, G.14
Jacob, H.15
Tonellato, P.J.16
-
108
-
-
11844270468
-
Quantitative structure-property relationships on photolysis of PCDD/Fs adsorbed to spruce (Picea abies (L.) Karst.) needle surfaces under sunlight irradiation
-
Niu, J.; Huang, L.; Chen, J.; Yu, G.; Schramm, K. W. Quantitative structure-property relationships on photolysis of PCDD/Fs adsorbed to spruce (Picea abies (L.) Karst.) needle surfaces under sunlight irradiation. Chemosphere, 2005, 58, 917-924
-
(2005)
Chemosphere
, vol.58
, pp. 917-924
-
-
Niu, J.1
Huang, L.2
Chen, J.3
Yu, G.4
Schramm, K.W.5
-
109
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa, M.; Araki, M.; Goto, S.; Hattori, M.; Hirakawa, M.; Itoh, M.; Katayama, T.; Kawashima, S.; Okuda, S.; Tokimatsu, T. KEGG for linking genomes to life and the environment. Nucleic Acids Res., 2008, 36, D480-D484.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
-
110
-
-
0032843036
-
Cadherins and catenins: Role in signal transduction and tumor progression
-
Behrens, J. Cadherins and catenins: role in signal transduction and tumor progression. Cancer Metastasis Rev., 1999, 18, 15-30.
-
(1999)
Cancer Metastasis Rev.
, vol.18
, pp. 15-30
-
-
Behrens, J.1
-
111
-
-
0035908493
-
Blocking oncogenic Ras signaling for cancer therapy
-
Adjei, A. A. Blocking oncogenic Ras signaling for cancer therapy. J. Natl. Cancer Inst., 2001, 93, 1062-1074
-
(2001)
J. Natl. Cancer Inst.
, vol.93
, pp. 1062-1074
-
-
Adjei, A.A.1
-
112
-
-
0035865413
-
TGF-beta and colorectal carcinogenesis
-
Roman, C.; Saha, D.; Beauchamp, R. TGF-beta and colorectal carcinogenesis. Microsc. Res. Tech., 2001, 52, 450-457
-
(2001)
Microsc. Res. Tech.
, vol.52
, pp. 450-457
-
-
Roman, C.1
Saha, D.2
Beauchamp, R.3
-
113
-
-
1242292420
-
Genomic instability and colon cancer
-
Grady, W. M. Genomic instability and colon cancer. Cancer Metastasis Rev., 2004, 23, 11-27.
-
(2004)
Cancer Metastasis Rev.
, vol.23
, pp. 11-27
-
-
Grady, W.M.1
-
114
-
-
4344716258
-
Role of the dependence receptor DCC in colorectal cancer pathogenesis
-
Mehlen, P.; Fearon, E. R. Role of the dependence receptor DCC in colorectal cancer pathogenesis. J. Clin. Oncol., 2004, 22, 3420-3428
-
(2004)
J. Clin. Oncol.
, vol.22
, pp. 3420-3428
-
-
Mehlen, P.1
Fearon, E.R.2
-
115
-
-
23844507181
-
The role of the Wnt signalling pathway in colorectal tumorigenesis
-
Behrens, J. The role of the Wnt signalling pathway in colorectal tumorigenesis. Biochem. Soc. Trans., 2005, 33, 672-675
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 672-675
-
-
Behrens, J.1
-
116
-
-
33750123099
-
Colorectal cancer: Genetics of development and metastasis
-
Takayama, T.; Miyanishi, K.; Hayashi, T.; Sato, Y.; Niitsu, Y. Colorectal cancer: genetics of development and metastasis. J. Gastroenterol., 2006, 41, 185-192
-
(2006)
J. Gastroenterol.
, vol.41
, pp. 185-192
-
-
Takayama, T.1
Miyanishi, K.2
Hayashi, T.3
Sato, Y.4
Niitsu, Y.5
-
117
-
-
31344443290
-
An overview of apoptosis and the prevention of colorectal cancer
-
Watson, A. J. An overview of apoptosis and the prevention of colorectal cancer. Crit. Rev. Oncol. Hematol., 2006, 57, 107-121
-
(2006)
Crit. Rev. Oncol. Hematol.
, vol.57
, pp. 107-121
-
-
Watson, A.J.1
-
118
-
-
38549117301
-
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
-
Caspi, R.; Foerster, H.; Fulcher, C. A.; Kaipa, P.; Krummenacker, M.; Latendresse, M.; Paley, S.; Rhee, S. Y.; Shearer, A. G.; Tissier, C.; Walk, T. C.; Zhang, P.; Karp, P. D. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res., 2008, 36, D623-31.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
Kaipa, P.4
Krummenacker, M.5
Latendresse, M.6
Paley, S.7
Rhee, S.Y.8
Shearer, A.G.9
Tissier, C.10
Walk, T.C.11
Zhang, P.12
Karp, P.D.13
-
119
-
-
18444415439
-
QSAR studies with E-state index: Predicting pharmacophore signals for estrogen receptor binding affinity of triphenylacrylonitriles
-
Mukherjee, S.; Mukherjee, A.; Saha, A. QSAR studies with E-state index: predicting pharmacophore signals for estrogen receptor binding affinity of triphenylacrylonitriles. Biol. Pharm. Bull., 2005, 28, 154-157
-
(2005)
Biol. Pharm. Bull.
, vol.28
, pp. 154-157
-
-
Mukherjee, S.1
Mukherjee, A.2
Saha, A.3
-
120
-
-
0037342537
-
The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
-
Hucka, M.; Finney, A.; Sauro, H. M.; Bolouri, H.; Doyle, J. C.; Kitano, H. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 2003, 19, 524-531.
-
(2003)
Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
-
121
-
-
0742323374
-
The HUPO PSI's molecular interaction format - A community standard for the representation of protein interaction data
-
Hermjakob, H.; Montecchi-Palazzi, L.; Bader, G.; Wojcik, J.; Salwinski, L.; Ceol, A.; Moore, S.; Orchard, S.; Sarkans, U.; von Mering, C. The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data. Nat. Biotechnol., 2004, 22, 177-183.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
Wojcik, J.4
Salwinski, L.5
Ceol, A.6
Moore, S.7
Orchard, S.8
Sarkans, U.9
Von Mering, C.10
-
122
-
-
2442595958
-
CellML: Its future, present and past
-
Lloyd, C. M.; Halstead, M. D. B.; Nielsen, P. F. CellML: its future, present and past. Prog. Biophys. Mol. Biol., 2004, 85, 433-450.
-
(2004)
Prog. Biophys. Mol. Biol.
, vol.85
, pp. 433-450
-
-
Lloyd, C.M.1
Halstead, M.D.B.2
Nielsen, P.F.3
-
123
-
-
28944444766
-
Representations of molecular pathways: An evaluation of SBML, PSI MI and BioPAX
-
Stromback, L.; Lambrix, P. Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX. Bioinformatics, 2005, 21, 4401-4407.
-
(2005)
Bioinformatics
, vol.21
, pp. 4401-4407
-
-
Stromback, L.1
Lambrix, P.2
-
124
-
-
16844386538
-
Practical approaches to efficient screening: Information-rich screening protocol
-
Karnachi, P. S.; Brown, F. K. Practical approaches to efficient screening: information-rich screening protocol. J. Biomol. Screen, 2004, 9, 678-686
-
(2004)
J. Biomol. Screen
, vol.9
, pp. 678-686
-
-
Karnachi, P.S.1
Brown, F.K.2
-
125
-
-
15744362693
-
Molecular determinants of substrate/inhibitor binding to the human and rabbit renal organic cation transporters hOCT2 and rbOCT2
-
Suhre, W. M.; Ekins, S.; Chang, C.; Swaan, P. W.; Wright, S. H. Molecular determinants of substrate/inhibitor binding to the human and rabbit renal organic cation transporters hOCT2 and rbOCT2. Mol. Pharmacol., 2005, 67, 1067-1077
-
(2005)
Mol. Pharmacol.
, vol.67
, pp. 1067-1077
-
-
Suhre, W.M.1
Ekins, S.2
Chang, C.3
Swaan, P.W.4
Wright, S.H.5
-
126
-
-
33751431796
-
NCI Thesaurus: A semantic model integrating cancer-related clinical and molecular information
-
Sioutos, N.; Coronado, S.; Haber, M. W.; Hartel, F. W.; Shaiu, W. L.; Wright, L. W. NCI Thesaurus: A semantic model integrating cancer-related clinical and molecular information. J. Biomed. Infor., 2007, 40, 30-43.
-
(2007)
J. Biomed. Infor.
, vol.40
, pp. 30-43
-
-
Sioutos, N.1
Coronado, S.2
Haber, M.W.3
Hartel, F.W.4
Shaiu, W.L.5
Wright, L.W.6
-
127
-
-
70349609443
-
Generalized lattice graphs for 2D-visualization of biological information
-
Gonzalez-Diaz, H.; Perez-Montoto, L. G.; Duardo-Sanchez, A.; Paniagua, E.; Vazquez-Prieto, S.; Vilas, R.; Dea-Ayuela, M. A.; Bolas-Fernandez, F.; Munteanu, C. R.; Dorado, J.; Costas, J.; Ubeira, F. M. Generalized lattice graphs for 2D-visualization of biological information. J. Theor. Biol., 2009, 261, 136-147
-
(2009)
J. Theor. Biol.
, vol.261
, pp. 136-147
-
-
Gonzalez-Diaz, H.1
Perez-Montoto, L.G.2
Duardo-Sanchez, A.3
Paniagua, E.4
Vazquez-Prieto, S.5
Vilas, R.6
Dea-Ayuela, M.A.7
Bolas-Fernandez, F.8
Munteanu, C.R.9
Dorado, J.10
Costas, J.11
Ubeira, F.M.12
-
128
-
-
0003780715
-
-
Addison-Wesley, Reading: MA, Philippines
-
Harary, F. Graph Theory, Addison-Wesley, Reading: MA, Philippines 1969.
-
(1969)
Graph Theory
-
-
Harary, F.1
-
131
-
-
72449197674
-
-
Software Reg. No. 03/2008/1338, Santiago de Compostela, Spain
-
Munteanu, C. R.; Gonzáles-Diáz, H. S2SNet - Sequence to Star Network, Software Reg. No. 03/2008/1338, Santiago de Compostela, Spain, 2008.
-
(2008)
S2SNet - Sequence to Star Network
-
-
Munteanu, C.R.1
Gonzáles-Diáz, H.2
-
132
-
-
33746674977
-
Exploration of biological network centralities with CentiBiN
-
Junker, B. H.; Koschuetzki, D.; Schreiber, F. Exploration of biological network centralities with CentiBiN, BMC Bioinformatics, 2006, 7, 219.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 219
-
-
Junker, B.H.1
Koschuetzki, D.2
Schreiber, F.3
-
133
-
-
0002226683
-
Pajek - Program for Large Network Analysis
-
Batagelj, V.; Mrvar, A. Pajek - Program for Large Network Analysis. Connections, 1998, 21, 47-57.
-
(1998)
Connections
, vol.21
, pp. 47-57
-
-
Batagelj, V.1
Mrvar, A.2
-
134
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
Sjoblom, T.; Jones, S.; Wood, L. D.; Parsons, D. W.; Lin, J.; Barber, T. D.; Mandelker, D.; Leary, R. J.; Ptak, J.; Silliman, N.; Szabo, S.; Buckhaults, P.; Farrell, C.; Meeh, P.; Markowitz, S. D.; Willis, J.; Dawson, D.; Willson, J. K.; Gazdar, A. F.; Hartigan, J.; Wu, L.; Liu, C.; Parmigiani, G.; Park, B. H.; Bachman, K. E.; Papadopoulos, N.; Vogelstein, B.; Kinzler, K. W.; Velculescu, V. E. The consensus coding sequences of human breast and colorectal cancers. Science, 2006, 314, 268-274
-
(2006)
Science
, vol.314
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
Parsons, D.W.4
Lin, J.5
Barber, T.D.6
Mandelker, D.7
Leary, R.J.8
Ptak, J.9
Silliman, N.10
Szabo, S.11
Buckhaults, P.12
Farrell, C.13
Meeh, P.14
Markowitz, S.D.15
Willis, J.16
Dawson, D.17
Willson, J.K.18
Gazdar, A.F.19
Hartigan, J.20
Wu, L.21
Liu, C.22
Parmigiani, G.23
Park, B.H.24
Bachman, K.E.25
Papadopoulos, N.26
Vogelstein, B.27
Kinzler, K.W.28
Velculescu, V.E.29
more..
-
135
-
-
3242773098
-
Prediction of protein function in the absence of significant sequence similarity
-
Dobson, P. D.; Cai, Y. D.; Stapley, B. J.; Doig, A. J. Prediction of protein function in the absence of significant sequence similarity. Curr. Med. Chem., 2004, 11, 2135-2142
-
(2004)
Curr. Med. Chem.
, vol.11
, pp. 2135-2142
-
-
Dobson, P.D.1
Cai, Y.D.2
Stapley, B.J.3
Doig, A.J.4
-
136
-
-
9644283060
-
Predicting enzyme class from protein structure without alignments
-
Dobson, P. D.; Doig, A. J. Predicting enzyme class from protein structure without alignments. J. Mol. Biol., 2005, 345, 187-199
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 187-199
-
-
Dobson, P.D.1
Doig, A.J.2
-
137
-
-
77953295696
-
-
version 6.0
-
StatSoft.Inc. STATISTICA, (data analysis software system), version 6.0, www.statsoft.com, 2002.
-
(2002)
Data Analysis Software System
-
-
-
138
-
-
0035970057
-
The universal nature of biochemistry
-
Pace, N. R. The universal nature of biochemistry. Proc. Natl. Acad. Sci. U S A, 2001, 98, 805-808
-
(2001)
Proc. Natl. Acad. Sci. U S A
, vol.98
, pp. 805-808
-
-
Pace, N.R.1
-
139
-
-
0043192817
-
Complex dynamics and the structure of small neural networks
-
Pasemann, F. Complex dynamics and the structure of small neural networks. Network, 2002, 13, 195-216.
-
(2002)
Network
, vol.13
, pp. 195-216
-
-
Pasemann, F.1
-
140
-
-
39549102648
-
Metabolomics in biomarker discovery: Future uses for cancer prevention
-
Kim, Y. S.; Maruvada, P.; Milner, J. A. Metabolomics in biomarker discovery: future uses for cancer prevention. Future Oncol., 2008, 4, 93-102.
-
(2008)
Future Oncol.
, vol.4
, pp. 93-102
-
-
Kim, Y.S.1
Maruvada, P.2
Milner, J.A.3
-
142
-
-
72249107538
-
Fast targeted multidimensional NMR metabolomics of colorectal cancer
-
Ludwig, C.; Ward, D. G.; Martin, A.; Viant, M. R.; Ismail, T.; Johnson, P. J.; Wakelam, M. J.; Gunther, U. L. Fast targeted multidimensional NMR metabolomics of colorectal cancer. Magn. Reson. Chem., 2009, 47 Suppl 1, S68-73.
-
(2009)
Magn. Reson. Chem.
, vol.47
, Issue.SUPPL. 1
-
-
Ludwig, C.1
Ward, D.G.2
Martin, A.3
Viant, M.R.4
Ismail, T.5
Johnson, P.J.6
Wakelam, M.J.7
Gunther, U.L.8
-
143
-
-
33847370301
-
Tumour metabolomics in animal models of human cancer
-
Griffin, J. L.; Kauppinen, R. A. Tumour metabolomics in animal models of human cancer. J. Proteome Res., 2007, 6, 498-505.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 498-505
-
-
Griffin, J.L.1
Kauppinen, R.A.2
-
144
-
-
64549133864
-
Metabolomic characterization of human rectal adenocarcinoma with intact tissue magnetic resonance spectroscopy
-
Jordan, K. W.; Nordenstam, J.; Lauwers, G. Y.; Rothenberger, D. A.; Alavi, K.; Garwood, M.; Cheng, L. L. Metabolomic characterization of human rectal adenocarcinoma with intact tissue magnetic resonance spectroscopy. Dis. Colon. Rectum., 2009, 52, 520-525
-
(2009)
Dis. Colon. Rectum.
, vol.52
, pp. 520-525
-
-
Jordan, K.W.1
Nordenstam, J.2
Lauwers, G.Y.3
Rothenberger, D.A.4
Alavi, K.5
Garwood, M.6
Cheng, L.L.7
-
145
-
-
33846088138
-
HMDB: The Human metabolome database
-
Wishart, D. S.; Tzur, D.; Knox, C.; Eisner, R.; Guo, A. C.; Young, N.; Cheng, D.; Jewell, K.; Arndt, D.; Sawhney, S.; Fung, C.; Nikolai, L.; Lewis, M.; Coutouly, M. A.; Forsythe, I.; Tang, P.; Shrivastava, S.; Jeroncic, K.; Stothard, P.; Amegbey, G.; Block, D.; Hau, D. D.; Wagner, J.; Miniaci, J.; Clements, M.; Gebremedhin, M.; Guo, N.; Zhang, Y.; Duggan, G. E.; Macinnis, G. D.; Weljie, A. M.; Dowlatabadi, R.; Bamforth, F.; Clive, D.; Greiner, R.; Li, L.; Marrie, T.; Sykes, B. D.; Vogel, H. J.; Querengesser, L. HMDB: the Human metabolome database. Nucleic Acids Res., 2007, 35, D521-6.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Wishart, D.S.1
Tzur, D.2
Knox, C.3
Eisner, R.4
Guo, A.C.5
Young, N.6
Cheng, D.7
Jewell, K.8
Arndt, D.9
Sawhney, S.10
Fung, C.11
Nikolai, L.12
Lewis, M.13
Coutouly, M.A.14
Forsythe, I.15
Tang, P.16
Shrivastava, S.17
Jeroncic, K.18
Stothard, P.19
Amegbey, G.20
Block, D.21
Hau, D.D.22
Wagner, J.23
Miniaci, J.24
Clements, M.25
Gebremedhin, M.26
Guo, N.27
Zhang, Y.28
Duggan, G.E.29
Macinnis, G.D.30
Weljie, A.M.31
Dowlatabadi, R.32
Bamforth, F.33
Clive, D.34
Greiner, R.35
Li, L.36
Marrie, T.37
Sykes, B.D.38
Vogel, H.J.39
Querengesser, L.40
more..
-
146
-
-
34547140875
-
The human disease network
-
Goh, K. I.; Cusick, M. E.; Valle, D.; Childs, B.; Vidal, M.; Barabasi, A. L. The human disease network. Proc. Natl. Acad. Sci. U S A, 2007, 104, 8685-8690
-
(2007)
Proc. Natl. Acad. Sci. U S A
, vol.104
, pp. 8685-8690
-
-
Goh, K.I.1
Cusick, M.E.2
Valle, D.3
Childs, B.4
Vidal, M.5
Barabasi, A.L.6
-
147
-
-
20444363124
-
From genomes to in silico cells via metabolic networks
-
Borodina, I.; Nielsen, J. From genomes to in silico cells via metabolic networks. Curr. Opin. Biotechnol., 2005, 16, 350-355
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 350-355
-
-
Borodina, I.1
Nielsen, J.2
-
148
-
-
33646370211
-
Systems analyses characterize integrated functions of biochemical networks
-
Gianchandani, E. P.; Brautigan, D. L.; Papin, J. A. Systems analyses characterize integrated functions of biochemical networks. Trends Biochem. Sci., 2006, 31, 284-291
-
(2006)
Trends Biochem. Sci.
, vol.31
, pp. 284-291
-
-
Gianchandani, E.P.1
Brautigan, D.L.2
Papin, J.A.3
-
149
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte, N. C.; Becker, S. A.; Jamshidi, N.; Thiele, I.; Mo, M. L.; Vo, T. D.; Srivas, R.; Palsson, B. O. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc. Natl. Acad. Sci. U S A, 2007, 104, 1777-1782
-
(2007)
Proc. Natl. Acad. Sci. U S A
, vol.104
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.O.8
-
150
-
-
48249158278
-
The implications of human metabolic network topology for disease comorbidity
-
Lee, D. S.; Park, J.; Kay, K. A.; Christakis, N. A.; Oltvai, Z. N.; Barabasi, A. L. The implications of human metabolic network topology for disease comorbidity. Proc. Natl. Acad. Sci. U S A, 2008, 105, 9880-9885
-
(2008)
Proc. Natl. Acad. Sci. U S A
, vol.105
, pp. 9880-9885
-
-
Lee, D.S.1
Park, J.2
Kay, K.A.3
Christakis, N.A.4
Oltvai, Z.N.5
Barabasi, A.L.6
-
151
-
-
79952114337
-
-
John Wiley & Sons, Inc.: IL, USA, DOI: 10.1002/wsbm.75
-
Edelman, L. B.; Eddy, J. A.; Price, N. D. In Wiley Interdisciplinary Reviews: Systems Biology and Medicine; John Wiley & Sons, Inc.: IL, USA, 2010; Vol. DOI: 10.1002/wsbm.75.
-
(2010)
Wiley Interdisciplinary Reviews: Systems Biology and Medicine
-
-
Edelman, L.B.1
Eddy, J.A.2
Price, N.D.3
-
152
-
-
0001221508
-
On respiratory impairment in cancer cells
-
Warburg, O. On respiratory impairment in cancer cells, Science, 1956, 124, 269-270
-
(1956)
Science
, vol.124
, pp. 269-270
-
-
Warburg, O.1
-
153
-
-
84887212425
-
The Warburg effect suppresses oxidative stress induced apoptosis in a yeast model for cancer
-
Ruckenstuhl, C.; Buttner, S.; Carmona-Gutierrez, D.; Eisenberg, T.; Kroemer, G.; Sigrist, S. J.; Frohlich, K. U.; Madeo, F. The Warburg effect suppresses oxidative stress induced apoptosis in a yeast model for cancer. PLoS One, 2009, 4, e4592.
-
(2009)
PLoS One
, vol.4
-
-
Ruckenstuhl, C.1
Buttner, S.2
Carmona-Gutierrez, D.3
Eisenberg, T.4
Kroemer, G.5
Sigrist, S.J.6
Frohlich, K.U.7
Madeo, F.8
-
154
-
-
52649107626
-
Cancer cell metabolism: Warburg and beyond
-
Hsu, P. P.; Sabatini, D. M. Cancer cell metabolism: Warburg and beyond. Cell, 2008, 134, 703-707
-
(2008)
Cell
, vol.134
, pp. 703-707
-
-
Hsu, P.P.1
Sabatini, D.M.2
-
155
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa, M.; Goto, S.; Furumichi, M.; Tanabe, M.; Hirakawa, M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res., 2010, 38, D355-60.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
156
-
-
33845423933
-
Molecular biology of colorectal cancer: New targets
-
Kitisin, K.; Mishra, L. Molecular biology of colorectal cancer: new targets. Semin. Oncol., 2006, 33, S14-23.
-
(2006)
Semin. Oncol.
, vol.33
-
-
Kitisin, K.1
Mishra, L.2
-
157
-
-
38049125557
-
Mechanisms and functions of DNA mismatch repair
-
Li, G. M. Mechanisms and functions of DNA mismatch repair. Cell Res., 2008, 18, 85-98.
-
(2008)
Cell Res.
, vol.18
, pp. 85-98
-
-
Li, G.M.1
-
158
-
-
0036252540
-
DNA mismatch repair defects: Role in colorectal carcinogenesis
-
Jacob, S.; Praz, F. DNA mismatch repair defects: role in colorectal carcinogenesis. Biochimie, 2002, 84, 27-47.
-
(2002)
Biochimie
, vol.84
, pp. 27-47
-
-
Jacob, S.1
Praz, F.2
-
159
-
-
0033895709
-
Wnt signaling and cancer
-
Polakis, P. Wnt signaling and cancer. Genes Dev., 2000, 14, 1837-1851
-
(2000)
Genes Dev.
, vol.14
, pp. 1837-1851
-
-
Polakis, P.1
-
160
-
-
42549164807
-
Wnt signalling and its impact on development and cancer
-
Klaus, A.; Birchmeier, W. Wnt signalling and its impact on development and cancer. Nat. Rev. Cancer, 2008, 8, 387-398
-
(2008)
Nat. Rev. Cancer
, vol.8
, pp. 387-398
-
-
Klaus, A.1
Birchmeier, W.2
-
161
-
-
0034644526
-
Linking colorectal cancer to Wnt signaling
-
Bienz, M.; Clevers, H. Linking colorectal cancer to Wnt signaling, Cell, 2000, 103, 311-320
-
(2000)
Cell
, vol.103
, pp. 311-320
-
-
Bienz, M.1
Clevers, H.2
-
162
-
-
34547107319
-
WNT signaling pathway and stem cell signaling network
-
Katoh, M.; Katoh, M. WNT signaling pathway and stem cell signaling network. Clin. Cancer Res., 2007, 13, 4042-4045
-
(2007)
Clin. Cancer Res.
, vol.13
, pp. 4042-4045
-
-
Katoh, M.1
Katoh, M.2
-
163
-
-
0033777043
-
Catenins, Wnt signaling and cancer
-
Barker, N.; Clevers, H. Catenins, Wnt signaling and cancer. Bioessays, 2000, 22, 961-965
-
(2000)
Bioessays
, vol.22
, pp. 961-965
-
-
Barker, N.1
Clevers, H.2
-
164
-
-
34547789841
-
TGF-beta signaling alterations and susceptibility to colorectal cancer
-
Xu, Y.; Pasche, B. TGF-beta signaling alterations and susceptibility to colorectal cancer. Hum. Mol. Genet., 2007, 16 Spec No 1, R14-20.
-
(2007)
Hum. Mol. Genet.
, vol.16
, Issue.SPEC NO. 1
-
-
Xu, Y.1
Pasche, B.2
-
165
-
-
40849133772
-
Role of transforming growth factorbeta superfamily signaling pathways in human disease
-
Gordon, K. J.; Blobe, G. C. Role of transforming growth factorbeta superfamily signaling pathways in human disease. Biochim. Biophys. Acta., 2008, 1782, 197-228.
-
(2008)
Biochim. Biophys. Acta.
, vol.1782
, pp. 197-228
-
-
Gordon, K.J.1
Blobe, G.C.2
-
166
-
-
42149083899
-
Mutations in the RAS-MAPK, PI(3)K (phosphatidylinositol-3-OH kinase) signaling network correlate with poor survival in a population-based series of colon cancers
-
Barault, L.; Veyrie, N.; Jooste, V.; Lecorre, D.; Chapusot, C.; Ferraz, J. M.; Lievre, A.; Cortet, M.; Bouvier, A. M.; Rat, P.; Roignot, P.; Faivre, J.; Laurent-Puig, P.; Piard, F. Mutations in the RAS-MAPK, PI(3)K (phosphatidylinositol-3-OH kinase) signaling network correlate with poor survival in a population-based series of colon cancers. Int. J. Cancer, 2008, 122, 2255-2259
-
(2008)
Int. J. Cancer
, vol.122
, pp. 2255-2259
-
-
Barault, L.1
Veyrie, N.2
Jooste, V.3
Lecorre, D.4
Chapusot, C.5
Ferraz, J.M.6
Lievre, A.7
Cortet, M.8
Bouvier, A.M.9
Rat, P.10
Roignot, P.11
Faivre, J.12
Laurent-Puig, P.13
Piard, F.14
-
167
-
-
38949208776
-
BRAF provides proliferation and survival signals in MSI colorectal carcinoma cells displaying BRAF(V600E) but not KRAS mutations
-
Preto, A.; Figueiredo, J.; Velho, S.; Ribeiro, A. S.; Soares, P.; Oliveira, C.; Seruca, R. BRAF provides proliferation and survival signals in MSI colorectal carcinoma cells displaying BRAF(V600E) but not KRAS mutations. J. Pathol., 2008, 214, 320-327
-
(2008)
J. Pathol.
, vol.214
, pp. 320-327
-
-
Preto, A.1
Figueiredo, J.2
Velho, S.3
Ribeiro, A.S.4
Soares, P.5
Oliveira, C.6
Seruca, R.7
-
168
-
-
67650901206
-
Quantitative cell signalling analysis reveals down-regulation of MAPK pathway activation in colorectal cancer
-
Gulmann, C.; Sheehan, K. M.; Conroy, R. M.; Wulfkuhle, J. D.; Espina, V.; Mullarkey, M. J.; Kay, E. W.; Liotta, L. A.; Petricoin, E. F., 3rd. Quantitative cell signalling analysis reveals down-regulation of MAPK pathway activation in colorectal cancer. J. Pathol., 2009, 218, 514-519
-
(2009)
J. Pathol.
, vol.218
, pp. 514-519
-
-
Gulmann, C.1
Sheehan, K.M.2
Conroy, R.M.3
Wulfkuhle, J.D.4
Espina, V.5
Mullarkey, M.J.6
Kay, E.W.7
Liotta, L.A.8
Petricoin III, E.F.9
-
169
-
-
28844505028
-
Mutant KRAS, chromosomal instability and prognosis in colorectal cancer
-
Castagnola, P.; Giaretti, W. Mutant KRAS, chromosomal instability and prognosis in colorectal cancer. Biochim Biophys Acta, 2005, 1756, 115-125
-
(2005)
Biochim Biophys Acta
, vol.1756
, pp. 115-125
-
-
Castagnola, P.1
Giaretti, W.2
-
170
-
-
35348974695
-
-
Hardwood Acedemic Publishers, The Gordon and Breach Publishing Group: Amsterdam, The Netherlands
-
Lupulescu, A. Cancer Cell Metabolism and Cancer Treatment, Hardwood Acedemic Publishers, The Gordon and Breach Publishing Group: Amsterdam, The Netherlands 2001.
-
(2001)
Cancer Cell Metabolism and Cancer Treatment
-
-
Lupulescu, A.1
-
171
-
-
0016675981
-
Enzymes in colon cancer. 〈I〉General information〈/I〉
-
Morton, K. S. Enzymes in colon cancer. 〈I〉General information〈/I〉. Cancer, 1975, 36, 2334-2336.
-
(1975)
Cancer
, vol.36
, pp. 2334-2336
-
-
Morton, K.S.1
-
172
-
-
54349088296
-
Metabolite profiling of human colon carcinoma - Deregulation of TCA cycle and amino acid turnover
-
Denkert, C.; Budczies, J.; Weichert, W.; Wohlgemuth, G.; Scholz, M.; Kind, T.; Niesporek, S.; Noske, A.; Buckendahl, A.; Dietel, M.; Fiehn, O. Metabolite profiling of human colon carcinoma - deregulation of TCA cycle and amino acid turnover. Mol. Cancer, 2008, 7, 72.
-
(2008)
Mol. Cancer
, vol.7
, pp. 72
-
-
Denkert, C.1
Budczies, J.2
Weichert, W.3
Wohlgemuth, G.4
Scholz, M.5
Kind, T.6
Niesporek, S.7
Noske, A.8
Buckendahl, A.9
Dietel, M.10
Fiehn, O.11
-
173
-
-
77749245859
-
Kallikrein- Related Peptidase 4. A new activator of the aberrantly expressed protease-activated receptor 1 in colon cancer cells
-
Gratio, V.; Beaufort, N.; Seiz, L.; Maier, J.; Virca, G. D.; Debela, M.; Grebenchtchikov, N.; Magdolen, V.; Darmoul, D. Kallikrein- Related Peptidase 4. A new activator of the aberrantly expressed protease-activated receptor 1 in colon cancer cells. Am. J. Pathol., 2010, 176(3), 1452-1461.
-
(2010)
Am. J. Pathol.
, vol.176
, Issue.3
, pp. 1452-1461
-
-
Gratio, V.1
Beaufort, N.2
Seiz, L.3
Maier, J.4
Virca, G.D.5
Debela, M.6
Grebenchtchikov, N.7
Magdolen, V.8
Darmoul, D.9
-
174
-
-
66149156998
-
Discovery and scoring of protein interaction subnetworks discriminative of late stage human colon cancer
-
Nibbe, R. K.; Markowitz, S.; Myeroff, L.; Ewing, R.; Chance, M. R. Discovery and scoring of protein interaction subnetworks discriminative of late stage human colon cancer. Mol. Cell Proteomics, 2009, 8, 827-845
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 827-845
-
-
Nibbe, R.K.1
Markowitz, S.2
Myeroff, L.3
Ewing, R.4
Chance, M.R.5
-
175
-
-
76749148657
-
An integrative -omics approach to identify functional sub-networks in human colorectal cancer
-
Nibbe, R. K.; Koyuturk, M.; Chance, M. R. An integrative -omics approach to identify functional sub-networks in human colorectal cancer. PLoS Comput. Biol., 2010, 6, e1000639.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Nibbe, R.K.1
Koyuturk, M.2
Chance, M.R.3
-
176
-
-
41649119247
-
Protein networks in disease
-
Ideker, T.; Sharan, R. Protein networks in disease. Genome Res., 2008, 18, 644-652
-
(2008)
Genome Res.
, vol.18
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
177
-
-
75549085083
-
Human protein reference database and human proteinpedia as discovery tools for systems biology
-
Prasad, T. S.; Kandasamy, K.; Pandey, A. Human protein reference database and human proteinpedia as discovery tools for systems biology. Methods Mol. Biol., 2009, 577, 67-79.
-
(2009)
Methods Mol. Biol.
, vol.577
, pp. 67-79
-
-
Prasad, T.S.1
Kandasamy, K.2
Pandey, A.3
-
178
-
-
1542406246
-
Proteome analysis of human colon cancer by two-dimensional difference gel electrophoresis and mass spectrometry
-
Friedman, D. B.; Hill, S.; Keller, J. W.; Merchant, N. B.; Levy, S. E.; Coffey, R. J.; Caprioli, R. M. Proteome analysis of human colon cancer by two-dimensional difference gel electrophoresis and mass spectrometry. Proteomics, 2004, 4, 793-811.
-
(2004)
Proteomics
, vol.4
, pp. 793-811
-
-
Friedman, D.B.1
Hill, S.2
Keller, J.W.3
Merchant, N.B.4
Levy, S.E.5
Coffey, R.J.6
Caprioli, R.M.7
-
179
-
-
41549139527
-
Walking the interactome for prioritization of candidate disease genes
-
Kohler, S.; Bauer, S.; Horn, D.; Robinson, P. N. Walking the interactome for prioritization of candidate disease genes. Am. J. Hum. Genet., 2008, 82, 949-958
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 949-958
-
-
Kohler, S.1
Bauer, S.2
Horn, D.3
Robinson, P.N.4
-
180
-
-
62849126285
-
Disease candidate gene identification and prioritization using protein interaction networks
-
Chen, J.; Aronow, B. J.; Jegga, A. G. Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinformatics, 2009, 10, 73.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 73
-
-
Chen, J.1
Aronow, B.J.2
Jegga, A.G.3
-
181
-
-
4644231870
-
A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease
-
Goehler, H.; Lalowski, M.; Stelzl, U.; Waelter, S.; Stroedicke, M.; Worm,
-
(2004)
Mol. Cell
, vol.15
, pp. 853-865
-
-
Goehler, H.1
Lalowski, M.2
Stelzl, U.3
Waelter, S.4
Stroedicke, M.5
Worm, U.6
Droege, A.7
Lindenberg, K.S.8
Knoblich, M.9
Haenig, C.10
Herbst, M.11
Suopanki, J.12
Scherzinger, E.13
Abraham, C.14
Bauer, B.15
Hasenbank, R.16
Fritzsche, A.17
Ludewig, A.H.18
Bussow, K.19
Coleman, S.H.20
Gutekunst, C.A.21
Landwehrmeyer, B.G.22
Lehrach, H.23
Wanker, E.E.24
more..
-
182
-
-
27144509163
-
A network-based analysis of systemic inflammation in humans
-
Calvano, S. E.; Xiao, W.; Richards, D. R.; Felciano, R. M.; Baker, H. V.; Cho, R. J.; Chen, R. O.; Brownstein, B. H.; Cobb, J. P.; Tschoeke, S. K.; Miller-Graziano, C.; Moldawer, L. L.; Mindrinos, M. N.; Davis, R. W.; Tompkins, R. G.; Lowry, S. F. A network-based analysis of systemic inflammation in humans. Nature, 2005, 437, 1032-1037
-
(2005)
Nature
, vol.437
, pp. 1032-1037
-
-
Calvano, S.E.1
Xiao, W.2
Richards, D.R.3
Felciano, R.M.4
Baker, H.V.5
Cho, R.J.6
Chen, R.O.7
Brownstein, B.H.8
Cobb, J.P.9
Tschoeke, S.K.10
Miller-Graziano, C.11
Moldawer, L.L.12
Mindrinos, M.N.13
Davis, R.W.14
Tompkins, R.G.15
Lowry, S.F.16
-
183
-
-
35349024501
-
Network modeling links breast cancer susceptibility and centrosome dysfunction
-
Pujana, M. A.; Han, J. D.; Starita, L. M.; Stevens, K. N.; Tewari, M.; Ahn, J. S.; Rennert, G.; Moreno, V.; Kirchhoff, T.; Gold, B.; Assmann, V.; Elshamy, W. M.; Rual, J. F.; Levine, D.; Rozek, L. S.; Gelman, R. S.; Gunsalus, K. C.; Greenberg, R. A.; Sobhian, B.; Bertin, N.; Venkatesan, K.; Ayivi-Guedehoussou, N.; Sole, X.; Hernandez, P.; Lazaro, C.; Nathanson, K. L.; Weber, B. L.; Cusick, M. E.; Hill, D. E.; Offit, K.; Livingston, D. M.; Gruber, S. B.; Parvin, J. D.; Vidal, M. Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat. Genet, 2007, 39, 1338-1349
-
(2007)
Nat. Genet
, vol.39
, pp. 1338-1349
-
-
Pujana, M.A.1
Han, J.D.2
Starita, L.M.3
Stevens, K.N.4
Tewari, M.5
Ahn, J.S.6
Rennert, G.7
Moreno, V.8
Kirchhoff, T.9
Gold, B.10
Assmann, V.11
Elshamy, W.M.12
Rual, J.F.13
Levine, D.14
Rozek, L.S.15
Gelman, R.S.16
Gunsalus, K.C.17
Greenberg, R.A.18
Sobhian, B.19
Bertin, N.20
Venkatesan, K.21
Ayivi-Guedehoussou, N.22
Sole, X.23
Hernandez, P.24
Lazaro, C.25
Nathanson, K.L.26
Weber, B.L.27
Cusick, M.E.28
Hill, D.E.29
Offit, K.30
Livingston, D.M.31
Gruber, S.B.32
Parvin, J.D.33
Vidal, M.34
more..
-
184
-
-
59649111554
-
Identification of candidate disease genes by integrating Gene Ontologies and protein-interaction networks: Case study of primary immunodeficiencies
-
Ortutay, C.; Vihinen, M. Identification of candidate disease genes by integrating Gene Ontologies and protein-interaction networks: case study of primary immunodeficiencies. Nucleic Acids Res., 2009, 37, 622-628
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 622-628
-
-
Ortutay, C.1
Vihinen, M.2
-
185
-
-
77951020143
-
Disease gene-fishing in molecular interaction networks: A case study in colorectal cancer
-
Huang, H.; Li, J.; Chen, J. Y. Disease gene-fishing in molecular interaction networks: A case study in colorectal cancer. Conf. Proc. IEEE Eng. Med. Biol. Soc., 2009, 1, 6416-6419
-
(2009)
Conf. Proc. IEEE Eng. Med. Biol. Soc.
, vol.1
, pp. 6416-6419
-
-
Huang, H.1
Li, J.2
Chen, J.Y.3
-
186
-
-
33746462775
-
The clinical applications of a systems approach
-
Ahn, A. C.; Tewari, M.; Poon, C. S.; Phillips, R. S. The clinical applications of a systems approach. PLoS Med., 2006, 3, e209.
-
(2006)
PLoS Med.
, vol.3
-
-
Ahn, A.C.1
Tewari, M.2
Poon, C.S.3
Phillips, R.S.4
-
187
-
-
27644503675
-
GeneRank: Using search engine technology for the analysis of microarray experiments
-
Morrison, J. L.; Breitling, R.; Higham, D. J.; Gilbert, D. R. GeneRank: using search engine technology for the analysis of microarray experiments. BMC Bioinformatics, 2005, 6, 233.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 233
-
-
Morrison, J.L.1
Breitling, R.2
Higham, D.J.3
Gilbert, D.R.4
-
188
-
-
13444266370
-
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
-
Hamosh, A.; Scott, A. F.; Amberger, J. S.; Bocchini, C. A.; McKusick, V. A. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res., 2005, 33, D514-7.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Hamosh, A.1
Scott, A.F.2
Amberger, J.S.3
Bocchini, C.A.4
McKusick, V.A.5
-
189
-
-
54049145486
-
Searching Online Mendelian Inheritance in Man (OMIM) for information for genetic loci involved in human disease
-
Chapter 1, Unit 12
-
Baxevanis, A. D. Searching Online Mendelian Inheritance in Man (OMIM) for information for genetic loci involved in human disease. Curr. Protoc. Bioinformatics, 2002, Chapter 1, Unit 12.
-
(2002)
Curr. Protoc. Bioinformatics
-
-
Baxevanis, A.D.1
-
190
-
-
33847246805
-
Oncomine 3.0: Genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
-
Rhodes, D. R.; Kalyana-Sundaram, S.; Mahavisno, V.; Varambally, R.; Yu, J.; Briggs, B. B.; Barrette, T. R.; Anstet, M. J.; Kincead- Beal, C.; Kulkarni, P.; Varambally, S.; Ghosh, D.; Chinnaiyan, A. M. Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. Neoplasia, 2007, 9, 166-180
-
(2007)
Neoplasia
, vol.9
, pp. 166-180
-
-
Rhodes, D.R.1
Kalyana-Sundaram, S.2
Mahavisno, V.3
Varambally, R.4
Yu, J.5
Briggs, B.B.6
Barrette, T.R.7
Anstet, M.J.8
Kincead- Beal, C.9
Kulkarni, P.10
Varambally, S.11
Ghosh, D.12
Chinnaiyan, A.M.13
-
191
-
-
33748502967
-
The Comparative Toxicogenomics Database (CTD): A resource for comparative toxicological studies
-
Mattingly, C. J.; Rosenstein, M. C.; Colby, G. T.; Forrest, J. N., Jr.; Boyer, J. L. The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies. J Exp. Zool A Comp. Exp. Biol., 2006, 305, 689-692
-
(2006)
J Exp. Zool a Comp. Exp. Biol.
, vol.305
, pp. 689-692
-
-
Mattingly, C.J.1
Rosenstein, M.C.2
Colby, G.T.3
Forrest Jr., J.N.4
Boyer, J.L.5
-
192
-
-
39049189899
-
Mining Alzheimer disease relevant proteins from integrated protein interactome data
-
Chen, J. Y.; Shen, C.; Sivachenko, A. Y. Mining Alzheimer disease relevant proteins from integrated protein interactome data. Pac. Symp. Biocomput., 2006, 367-378
-
(2006)
Pac. Symp. Biocomput.
, pp. 367-378
-
-
Chen, J.Y.1
Shen, C.2
Sivachenko, A.Y.3
-
193
-
-
33646564372
-
Interpreting disparate responses to cancer therapy: The role of human population genetics
-
Maitland, M. L.; DiRienzo, A.; Ratain, M. J. Interpreting disparate responses to cancer therapy: the role of human population genetics. J. Clin. Oncol., 2006, 24, 2151-2157
-
(2006)
J. Clin. Oncol.
, vol.24
, pp. 2151-2157
-
-
Maitland, M.L.1
DiRienzo, A.2
Ratain, M.J.3
-
194
-
-
32044466838
-
Exploiting the PI3K/AKT pathway for cancer drug discovery
-
Hennessy, B. T.; Smith, D. L.; Ram, P. T.; Lu, Y.; Mills, G. B. Exploiting the PI3K/AKT pathway for cancer drug discovery. Nat. Rev. Drug Discov., 2005, 4, 988-1004.
-
(2005)
Nat. Rev. Drug Discov.
, vol.4
, pp. 988-1004
-
-
Hennessy, B.T.1
Smith, D.L.2
Ram, P.T.3
Lu, Y.4
Mills, G.B.5
-
195
-
-
50149083259
-
Pharmacogenetics in colorectal cancer: A systematic review
-
Funke, S.; Brenner, H.; Chang-Claude, J. Pharmacogenetics in colorectal cancer: a systematic review. Pharmacogenomics, 2008, 9, 1079-1099
-
(2008)
Pharmacogenomics
, vol.9
, pp. 1079-1099
-
-
Funke, S.1
Brenner, H.2
Chang-Claude, J.3
-
196
-
-
69249104215
-
Cost effectiveness of pharmacogenetic testing for uridine diphosphate glucuronosyltransferase 1A1 before irinotecan administration for metastatic colorectal cancer
-
Gold, H. T.; Hall, M. J.; Blinder, V.; Schackman, B. R. Cost effectiveness of pharmacogenetic testing for uridine diphosphate glucuronosyltransferase 1A1 before irinotecan administration for metastatic colorectal cancer. Cancer, 2009, 115, 3858-3867
-
(2009)
Cancer
, vol.115
, pp. 3858-3867
-
-
Gold, H.T.1
Hall, M.J.2
Blinder, V.3
Schackman, B.R.4
-
197
-
-
53849083819
-
CYP2C19 pharmacogenetics in advanced cancer: Compromised function independent of genotype
-
Helsby, N. A.; Lo, W. Y.; Sharples, K.; Riley, G.; Murray, M.; Spells, K.; Dzhelai, M.; Simpson, A.; Findlay, M. CYP2C19 pharmacogenetics in advanced cancer: compromised function independent of genotype. Br. J. Cancer., 2008, 99, 1251-1255
-
(2008)
Br. J. Cancer.
, vol.99
, pp. 1251-1255
-
-
Helsby, N.A.1
Lo, W.Y.2
Sharples, K.3
Riley, G.4
Murray, M.5
Spells, K.6
Dzhelai, M.7
Simpson, A.8
Findlay, M.9
-
198
-
-
34548509226
-
FCGR2A and FCGR3A polymorphisms associated with clinical outcome of epidermal growth factor receptor expressing metastatic colorectal cancer patients treated with single-agent cetuximab
-
Zhang, W.; Gordon, M.; Schultheis, A. M.; Yang, D. Y.; Nagashima, F.; Azuma, M.; Chang, H. M.; Borucka, E.; Lurje, G.; Sherrod, A. E.; Iqbal, S.; Groshen, S.; Lenz, H. J. FCGR2A and FCGR3A polymorphisms associated with clinical outcome of epidermal growth factor receptor expressing metastatic colorectal cancer patients treated with single-agent cetuximab. J. Clin. Oncol., 2007, 25, 3712-3718
-
(2007)
J. Clin. Oncol.
, vol.25
, pp. 3712-3718
-
-
Zhang, W.1
Gordon, M.2
Schultheis, A.M.3
Yang, D.Y.4
Nagashima, F.5
Azuma, M.6
Chang, H.M.7
Borucka, E.8
Lurje, G.9
Sherrod, A.E.10
Iqbal, S.11
Groshen, S.12
Lenz, H.J.13
-
199
-
-
68549121184
-
Genetics: Predictive value of KRAS mutations in chemoresistant CRC
-
Lievre, A.; Laurent-Puig, P. Genetics: Predictive value of KRAS mutations in chemoresistant CRC. Nat. Rev. Clin. Oncol., 2009, 6, 306-307
-
(2009)
Nat. Rev. Clin. Oncol.
, vol.6
, pp. 306-307
-
-
Lievre, A.1
Laurent-Puig, P.2
-
200
-
-
77449136592
-
Molecular genetics and epigenetics of the cytochrome P450 gene family and its relevance for cancer risk and treatment
-
Rodriguez-Antona, C.; Gomez, A.; Karlgren, M.; Sim, S. C.; Ingelman-Sundberg, M. Molecular genetics and epigenetics of the cytochrome P450 gene family and its relevance for cancer risk and treatment. Hum. Genet., 2010, 127, 1-17.
-
(2010)
Hum. Genet.
, vol.127
, pp. 1-17
-
-
Rodriguez-Antona, C.1
Gomez, A.2
Karlgren, M.3
Sim, S.C.4
Ingelman-Sundberg, M.5
-
201
-
-
0035755351
-
Integrating genotype and phenotype information: An overview of the PharmGKB project. Pharmacogenetics research network and knowledge base
-
Klein, T. E.; Chang, J. T.; Cho, M. K.; Easton, K. L.; Fergerson, R.; Hewett, M.; Lin, Z.; Liu, Y.; Liu, S.; Oliver, D. E.; Rubin, D. L.; Shafa, F.; Stuart, J. M.; Altman, R. B. Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics research network and knowledge base. Pharmacogenomics J., 2001, 1, 167-170
-
(2001)
Pharmacogenomics J.
, vol.1
, pp. 167-170
-
-
Klein, T.E.1
Chang, J.T.2
Cho, M.K.3
Easton, K.L.4
Fergerson, R.5
Hewett, M.6
Lin, Z.7
Liu, Y.8
Liu, S.9
Oliver, D.E.10
Rubin, D.L.11
Shafa, F.12
Stuart, J.M.13
Altman, R.B.14
-
202
-
-
0024595925
-
Clinical pharmacology of 5-fluorouracil
-
Diasio, R. B.; Harris, B. E. Clinical pharmacology of 5-fluorouracil. Clin. Pharmacokinet., 1989, 16, 215-237
-
(1989)
Clin. Pharmacokinet.
, vol.16
, pp. 215-237
-
-
Diasio, R.B.1
Harris, B.E.2
-
203
-
-
0032127244
-
Design of a novel oral fluoropyrimidine carbamate, capecitabine, which generates 5-fluorouracil selectively in tumours by enzymes concentrated in human liver and cancer tissue
-
Miwa, M.; Ura, M.; Nishida, M.; Sawada, N.; Ishikawa, T.; Mori, K.; Shimma, N.; Umeda, I.; Ishitsuka, H. Design of a novel oral fluoropyrimidine carbamate, capecitabine, which generates 5-fluorouracil selectively in tumours by enzymes concentrated in human liver and cancer tissue. Eur. J. Cancer, 1998, 34, 1274-1281
-
(1998)
Eur. J. Cancer
, vol.34
, pp. 1274-1281
-
-
Miwa, M.1
Ura, M.2
Nishida, M.3
Sawada, N.4
Ishikawa, T.5
Mori, K.6
Shimma, N.7
Umeda, I.8
Ishitsuka, H.9
-
204
-
-
0141995085
-
Dihydropyrimidinase deficiency and severe 5-fluorouracil toxicity
-
van Kuilenburg, A. B.; Meinsma, R.; Zonnenberg, B. A.; Zoetekouw, L.; Baas, F.; Matsuda, K.; Tamaki, N.; van Gennip, A. H. Dihydropyrimidinase deficiency and severe 5-fluorouracil toxicity. Clin. Cancer Res., 2003, 9, 4363-4367
-
(2003)
Clin. Cancer Res.
, vol.9
, pp. 4363-4367
-
-
Van Kuilenburg, A.B.1
Meinsma, R.2
Zonnenberg, B.A.3
Zoetekouw, L.4
Baas, F.5
Matsuda, K.6
Tamaki, N.7
Van Gennip, A.H.8
-
205
-
-
63949083714
-
Role of BCRP as a biomarker for predicting resistance to 5-fluorouracil in breast cancer
-
Yuan, J.; Lv, H.; Peng, B.; Wang, C.; Yu, Y.; He, Z. Role of BCRP as a biomarker for predicting resistance to 5-fluorouracil in breast cancer. Cancer Chemother. Pharmacol., 2009, 63, 1103-1110
-
(2009)
Cancer Chemother. Pharmacol.
, vol.63
, pp. 1103-1110
-
-
Yuan, J.1
Lv, H.2
Peng, B.3
Wang, C.4
Yu, Y.5
He, Z.6
-
206
-
-
57449109392
-
ATP-binding cassette C transporters in human pancreatic carcinoma cell lines. Upregulation in 5-fluorouracil-resistant cells
-
Hagmann, W.; Jesnowski, R.; Faissner, R.; Guo, C.; Lohr, J. M. ATP-binding cassette C transporters in human pancreatic carcinoma cell lines. Upregulation in 5-fluorouracil-resistant cells. Pancreatology, 2009, 9, 136-144
-
(2009)
Pancreatology
, vol.9
, pp. 136-144
-
-
Hagmann, W.1
Jesnowski, R.2
Faissner, R.3
Guo, C.4
Lohr, J.M.5
-
207
-
-
67651213976
-
Platinum pathway
-
Marsh, S.; McLeod, H.; Dolan, E.; Shukla, S. J.; Rabik, C. A.; Gong, L.; Hernandez-Boussard, T.; Lou, X. J.; Klein, T. E.; Altman, R. B. Platinum pathway. Pharmacogenet. Genomics, 2009, 19, 563-564
-
(2009)
Pharmacogenet. Genomics
, vol.19
, pp. 563-564
-
-
Marsh, S.1
McLeod, H.2
Dolan, E.3
Shukla, S.J.4
Rabik, C.A.5
Gong, L.6
Hernandez-Boussard, T.7
Lou, X.J.8
Klein, T.E.9
Altman, R.B.10
-
208
-
-
0034107685
-
Role of metallothionein in cisplatin sensitivity of germ-cell tumours
-
Meijer, C.; Timmer, A.; De Vries, E. G.; Groten, J. P.; Knol, A.; Zwart, N.; Dam, W. A.; Sleijfer, D. T.; Mulder, N. H. Role of metallothionein in cisplatin sensitivity of germ-cell tumours. Int. J. Cancer, 2000, 85, 777-781
-
(2000)
Int. J. Cancer
, vol.85
, pp. 777-781
-
-
Meijer, C.1
Timmer, A.2
De Vries, E.G.3
Groten, J.P.4
Knol, A.5
Zwart, N.6
Dam, W.A.7
Sleijfer, D.T.8
Mulder, N.H.9
-
209
-
-
0033790607
-
Glutathione S-transferase genetic polymorphisms and individual sensitivity to the ototoxic effect of cisplatin
-
Peters, U.; Preisler-Adams, S.; Hebeisen, A.; Hahn, M.; Seifert, E.; Lanvers, C.; Heinecke, A.; Horst, J.; Jurgens, H.; Lamprecht-Dinnesen, A. Glutathione S-transferase genetic polymorphisms and individual sensitivity to the ototoxic effect of cisplatin. Anticancer Drugs, 2000, 11, 639-643
-
(2000)
Anticancer Drugs
, vol.11
, pp. 639-643
-
-
Peters, U.1
Preisler-Adams, S.2
Hebeisen, A.3
Hahn, M.4
Seifert, E.5
Lanvers, C.6
Heinecke, A.7
Horst, J.8
Jurgens, H.9
Lamprecht-Dinnesen, A.10
-
210
-
-
30744451927
-
Association between glutathione S-transferase pi polymorphisms and survival in patients with advanced nonsmall cell lung carcinoma
-
Lu, C.; Spitz, M. R.; Zhao, H.; Dong, Q.; Truong, M.; Chang, J. Y.; Blumenschein, G. R., Jr.; Hong, W. K.; Wu, X. Association between glutathione S-transferase pi polymorphisms and survival in patients with advanced nonsmall cell lung carcinoma. Cancer, 2006, 106, 441-447
-
(2006)
Cancer
, vol.106
, pp. 441-447
-
-
Lu, C.1
Spitz, M.R.2
Zhao, H.3
Dong, Q.4
Truong, M.5
Chang, J.Y.6
Blumenschein Jr., G.R.7
Hong, W.K.8
Wu, X.9
-
211
-
-
34249673868
-
Aspirin and the risk of colorectal cancer in relation to the expression of COX-2
-
Chan, A. T.; Ogino, S.; Fuchs, C. S. Aspirin and the risk of colorectal cancer in relation to the expression of COX-2. N. Engl. J. Med., 2007, 356, 2131-2142
-
(2007)
N. Engl. J. Med.
, vol.356
, pp. 2131-2142
-
-
Chan, A.T.1
Ogino, S.2
Fuchs, C.S.3
-
212
-
-
14944371215
-
Genetic variants in the UGT1A6 enzyme, aspirin use, and the risk of colorectal adenoma
-
Chan, A. T.; Tranah, G. J.; Giovannucci, E. L.; Hunter, D. J.; Fuchs, C. S. Genetic variants in the UGT1A6 enzyme, aspirin use, and the risk of colorectal adenoma. J. Natl. Cancer Inst., 2005, 97, 457-460
-
(2005)
J. Natl. Cancer Inst.
, vol.97
, pp. 457-460
-
-
Chan, A.T.1
Tranah, G.J.2
Giovannucci, E.L.3
Hunter, D.J.4
Fuchs, C.S.5
-
213
-
-
42349083012
-
Capecitabine: An overview of the side effects and their management
-
Saif, M. W.; Katirtzoglou, N. A.; Syrigos, K. N. Capecitabine: an overview of the side effects and their management. Anticancer Drugs, 2008, 19, 447-464
-
(2008)
Anticancer Drugs
, vol.19
, pp. 447-464
-
-
Saif, M.W.1
Katirtzoglou, N.A.2
Syrigos, K.N.3
-
214
-
-
38949175429
-
Thymidylate synthase and methylenetetrahydrofolate reductase gene polymorphisms and toxicity to capecitabine in advanced colorectal cancer patients
-
Sharma, R.; Hoskins, J. M.; Rivory, L. P.; Zucknick, M.; London, R.; Liddle, C.; Clarke, S. J. Thymidylate synthase and methylenetetrahydrofolate reductase gene polymorphisms and toxicity to capecitabine in advanced colorectal cancer patients. Clin. Cancer Res., 2008, 14, 817-825
-
(2008)
Clin. Cancer Res.
, vol.14
, pp. 817-825
-
-
Sharma, R.1
Hoskins, J.M.2
Rivory, L.P.3
Zucknick, M.4
London, R.5
Liddle, C.6
Clarke, S.J.7
-
215
-
-
20144365496
-
Cardiovascular risk associated with celecoxib in a clinical trial for colorectal adenoma prevention
-
Solomon, S. D.; McMurray, J. J.; Pfeffer, M. A.; Wittes, J.; Fowler, R.; Finn, P.; Anderson, W. F.; Zauber, A.; Hawk, E.; Bertagnolli, M. Cardiovascular risk associated with celecoxib in a clinical trial for colorectal adenoma prevention. N. Engl. J. Med., 2005, 352, 1071-1080
-
(2005)
N. Engl. J. Med.
, vol.352
, pp. 1071-1080
-
-
Solomon, S.D.1
McMurray, J.J.2
Pfeffer, M.A.3
Wittes, J.4
Fowler, R.5
Finn, P.6
Anderson, W.F.7
Zauber, A.8
Hawk, E.9
Bertagnolli, M.10
-
216
-
-
54949085398
-
K-ras mutations and benefit from cetuximab in advanced colorectal cancer
-
Karapetis, C. S.; Khambata-Ford, S.; Jonker, D. J.; O'Callaghan, C. J.; Tu, D.; Tebbutt, N. C.; Simes, R. J.; Chalchal, H.; Shapiro, J. D.; Robitaille, S.; Price, T. J.; Shepherd, L.; Au, H. J.; Langer, C.; Moore, M. J.; Zalcberg, J. R. K-ras mutations and benefit from cetuximab in advanced colorectal cancer. N. Engl. J. Med., 2008, 359, 1757-1765
-
(2008)
N. Engl. J. Med.
, vol.359
, pp. 1757-1765
-
-
Karapetis, C.S.1
Khambata-Ford, S.2
Jonker, D.J.3
O'Callaghan, C.J.4
Tu, D.5
Tebbutt, N.C.6
Simes, R.J.7
Chalchal, H.8
Shapiro, J.D.9
Robitaille, S.10
Price, T.J.11
Shepherd, L.12
Au, H.J.13
Langer, C.14
Moore, M.J.15
Zalcberg, J.R.16
-
217
-
-
34548256353
-
Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach
-
Huang, R. S.; Duan, S.; Shukla, S. J.; Kistner, E. O.; Clark, T. A.; Chen, T. X.; Schweitzer, A. C.; Blume, J. E.; Dolan, M. E. Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach. Am. J. Hum. Genet., 2007, 81, 427-437
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 427-437
-
-
Huang, R.S.1
Duan, S.2
Shukla, S.J.3
Kistner, E.O.4
Clark, T.A.5
Chen, T.X.6
Schweitzer, A.C.7
Blume, J.E.8
Dolan, M.E.9
-
218
-
-
1642568671
-
Methionine synthase D919G polymorphism, folate metabolism, and colorectal adenoma risk
-
Goode, E. L.; Potter, J. D.; Bigler, J.; Ulrich, C. M. Methionine synthase D919G polymorphism, folate metabolism, and colorectal adenoma risk. Cancer Epidemiol. Biomarkers Prev., 2004, 13, 157-162
-
(2004)
Cancer Epidemiol. Biomarkers Prev.
, vol.13
, pp. 157-162
-
-
Goode, E.L.1
Potter, J.D.2
Bigler, J.3
Ulrich, C.M.4
-
219
-
-
70649100114
-
MTHFR gene polymorphisms and response to chemotherapy in colorectal cancer: A meta-analysis
-
Zintzaras, E.; Ziogas, D. C.; Kitsios, G. D.; Papathanasiou, A. A.; Lau, J.; Raman, G. MTHFR gene polymorphisms and response to chemotherapy in colorectal cancer: a meta-analysis. Pharmacogenomics, 2009, 10, 1285-1294
-
(2009)
Pharmacogenomics
, vol.10
, pp. 1285-1294
-
-
Zintzaras, E.1
Ziogas, D.C.2
Kitsios, G.D.3
Papathanasiou, A.A.4
Lau, J.5
Raman, G.6
-
220
-
-
67349244038
-
Predictors of survival and toxicity in patients on adjuvant therapy with 5-fluorouracil for colorectal cancer
-
Gusella, M.; Frigo, A. C.; Bolzonella, C.; Marinelli, R.; Barile, C.; Bononi, A.; Crepaldi, G.; Menon, D.; Stievano, L.; Toso, S.; Pasini, F.; Ferrazzi, E.; Padrini, R. Predictors of survival and toxicity in patients on adjuvant therapy with 5-fluorouracil for colorectal cancer. Br. J. Cancer, 2009, 100, 1549-1557
-
(2009)
Br. J. Cancer
, vol.100
, pp. 1549-1557
-
-
Gusella, M.1
Frigo, A.C.2
Bolzonella, C.3
Marinelli, R.4
Barile, C.5
Bononi, A.6
Crepaldi, G.7
Menon, D.8
Stievano, L.9
Toso, S.10
Pasini, F.11
Ferrazzi, E.12
Padrini, R.13
-
221
-
-
73549093809
-
Genetic polymorphisms in GST genes and survival of colorectal cancer patients treated with chemotherapy
-
Funke, S.; Timofeeva, M.; Risch, A.; Hoffmeister, M.; Stegmaier, C.; Seiler, C. M.; Brenner, H.; Chang-Claude, J. Genetic polymorphisms in GST genes and survival of colorectal cancer patients treated with chemotherapy. Pharmacogenomics, 11, 33-41.
-
Pharmacogenomics
, vol.11
, pp. 33-41
-
-
Funke, S.1
Timofeeva, M.2
Risch, A.3
Hoffmeister, M.4
Stegmaier, C.5
Seiler, C.M.6
Brenner, H.7
Chang-Claude, J.8
-
222
-
-
33745140518
-
Acquired resistance to the anticancer drug paclitaxel is associated with induction of cytochrome P450 2C8
-
García-Martín, E.; Pizarro, R. M.; Martínez, C.; Gutierrez-Martín, Y.; Pérez, G.; Jover, R.; Agúndez, J. A. Acquired resistance to the anticancer drug paclitaxel is associated with induction of cytochrome P450 2C8. Pharmacogenomics, 2006, 7, 575-585
-
(2006)
Pharmacogenomics
, vol.7
, pp. 575-585
-
-
García-Martín, E.1
Pizarro, R.M.2
Martínez, C.3
Gutierrez-Martín, Y.4
Pérez, G.5
Jover, R.6
Agúndez, J.A.7
-
223
-
-
68449088161
-
The association between social networks and colorectal cancer screening in American males and females: Data from the 2005 Health Information National Trends Survey
-
Ye, J.; Williams, S. D.; Xu, Z. The association between social networks and colorectal cancer screening in American males and females: data from the 2005 Health Information National Trends Survey. Cancer Causes Control, 2009, 20, 1227-1233.
-
(2009)
Cancer Causes Control
, vol.20
, pp. 1227-1233
-
-
Ye, J.1
Williams, S.D.2
Xu, Z.3
-
225
-
-
33746674977
-
Exploration of biological network centralities with CentiBiN
-
Junker, B. H.; Koschuetzki, D.; Schreiber, F. Exploration of biological network centralities with CentiBiN. BMC Bioinformatics, 2006, 7, 219.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 219
-
-
Junker, B.H.1
Koschuetzki, D.2
Schreiber, F.3
-
226
-
-
39049100511
-
Unified QSAR and network-based computational chemistry approach to antimicrobials, part 1: Multispecies activity modelss for antifungals
-
González-Díaz, H.; Prado-Prado, F. J. Unified QSAR and network-based computational chemistry approach to antimicrobials, part 1: multispecies activity modelss for antifungals. J. Comput. Chem., 2008, 29(4), 656-667.
-
(2008)
J. Comput. Chem.
, vol.29
, Issue.4
, pp. 656-667
-
-
González-Díaz, H.1
Prado-Prado, F.J.2
-
227
-
-
0024640140
-
An Algorithm for Drawing General Undirected Graphs
-
Kamada, T.; Kawai, S. An Algorithm for Drawing General Undirected Graphs. Infor. Processing Lett., 1988, 31, 7-15.
-
(1988)
Infor. Processing Lett.
, vol.31
, pp. 7-15
-
-
Kamada, T.1
Kawai, S.2
-
229
-
-
0040688999
-
Matrix methods for calculating the triad census
-
Moody, J. Matrix methods for calculating the triad census. Soc. Networks, 1998, 20, 291-299. (Pubitemid 128344460)
-
(1998)
Social Networks
, vol.20
, Issue.4
, pp. 291-299
-
-
Moody, J.1
-
230
-
-
0035878813
-
Transferability in alkyl monoethers. II. Methyl and methylene fragments
-
Vila, A.; Mosquera, R. A. Transferability in alkyl monoethers. II. Methyl and methylene fragments. J. Chem. Phys., 2001, 115, 1264-1273.
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 1264-1273
-
-
Vila, A.1
Mosquera, R.A.2
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