The role of chemical dynamics in plant morphogenesis1

Biochemical Society Transactions

Volumn 38, Issue 2, 2010, Pages 645-650

  Holloway, David M ^a,b  

^a BRITISH COLUMBIA INSTITUTE OF TECHNOLOGY   (Canada)

^b UNIVERSITY OF VICTORIA   (Canada)

Author keywords

Chemical kinetics; Chemical pattern formation; Morphogenesis; Plant development; Reaction diffusion; Symmetry breaking

Indexed keywords

BIOCATALYSIS; BIOCHEMICAL COMPOSITION; CHEMICAL ANALYSIS; CONCENTRATION (PARAMETERS); FEEDBACK SYSTEM; GROWTH REGULATION; MATHEMATICAL MODEL; MORPHOGENESIS; NONHUMAN; PLANT DEVELOPMENT; PLANT GROWTH; PRIORITY JOURNAL; REVIEW; BIOLOGICAL MODEL; CHEMISTRY; COMPUTER SIMULATION; EXUDATE; GROWTH, DEVELOPMENT AND AGING; KINETICS; METABOLISM; PHYSIOLOGY; PLANT; PLANT MORPHOLOGY; PLANT PHYSIOLOGY; PRENATAL DEVELOPMENT; TISSUE DISTRIBUTION;

BODY PATTERNING; COMPUTER SIMULATION; EXUDATES AND TRANSUDATES; KINETICS; MODELS, BIOLOGICAL; MORPHOGENESIS; PLANT PHYSIOLOGICAL PHENOMENA; PLANT STRUCTURES; PLANTS; TISSUE DISTRIBUTION;

EID: 77953234831     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST0380645     Document Type: Review

References (51)

1. Beveridge, C.A., Mathesius, U., Rose, R.J. and Gresshoff, P.M. (2007) Common regulatory themes in meristem development and whole-plant morphogenesis. Curr. Opin. Plant Biol. 10, 44-51
2. Kessler, S. and Sinha, N. (2004) Shaping up: the genetic control of leaf shape. Curr. Opin. Plant Biol. 7, 65-72
3. de Reuille, P.B., Bohn-Courseau, I., Ljung, K., Morin, H., Carraro, N., Godin, C. and Traas, J. (2006) Computer simulations reveal properties of the cell - cell signalling network at the shoot apex in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103, 1627-1632
4. Jönsson, H., Heisler, M.G., Shapiro, B.E., Mjolsness, E. and Meyerowitz, E.M. (2006) An auxin-driven polarized transport model for phyllotaxis. Proc. Natl. Acad. Sci. U.S.A. 103, 1633-1638
5. Smith, R.S., Guyomarc'h, S., Mandel, T., Reinhardt, D., Kuhlemeier, C. and Prusinkiewicz, P. (2006) A plausible model of phyllotaxis. Proc. Natl. Acad. Sci. U.S.A. 103, 1301-1306
6. Grieneisen, V.A., Xu, J., Maree, A.F.M., Hogeweg, P. and Scheres, B. (2007) Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature 449, 1008-1013
7. Laskowski, M., Grieneisen, V.A., Hofhuis, H., ten Hove, C.A., Hogeweg, P., Maree, A.F.M. and Scheres, B. (2008) Root system architecture from coupling cell shape to auxin transport. PLoS Biol. 6, e307
8. Green, P.B., Steele, C.S. and Rennich, S.C. (1998) How plants produce pattern: a review and proposal that undulating field behavior is the mechanism. In Symmetry in Plants (Jean R.V. and Barabé, D., eds), pp. 359-392, World Scientific, Singapore
9. Goriely, A. and Tabor, M. (2003) Biomechanical models of hyphal growth in actinomycetes. J. Theor. Biol. 222, 211-218
10. Shipman, P.D. and Newell, A.C. (2005) Polygonal planforms and phyllotaxis on plants. J. Theor. Biol. 236, 154-197
11. Bohn, S., Andreotti, B., Douady, S., Munzinger, J. and Couder, Y. (2002) Constitutive property of the local organization of leaf venation networks. Phys. Rev. E 65, 061914
12. Dumais, J., Shaw, S.L., Steele, C.R., Long, S.R. and Ray, P.M. (2006) An anisotropic-viscoplastic model of plant cell morphogenesis by tip growth. Int. J. Dev. Biol. 50, 209-222
13. Lintilhac, P.M. and Green, P.B. (1976) Patterns of microfibrillar order in a dormant fern apex. Am. J. Bot. 63, 726-728
14. Wasteneys, G.O. and Ambrose, J.C. (2009) Spatial organization of plant cortical microtubules: close encounters of the 2D kind. Trends Cell Biol. 19, 62-71
15. Hamant, O., Heisler, M.G., Jönsson, H., Krupinski, P., Uyttewaal, M., Bokov, P., Corson, F., Sahlin, P., Boudaoud, A., Meyerowitz, E.M. et al. (2008) Developmental patterning by mechanical signals in Arabidopsis. Science 322, 1650-1655
16. Turing, A.M. (1952) The chemical basis of morphogenesis. Philos. Trans. R. Soc. London Ser. B 237, 37-72
17. Holloway, D.M., Harrison, L.G. and Armstrong, J.B. (1994) Computations of post-inductive dynamics in axolotl heart formation. Dev. Dyn. 200, 242-256
18. Prigogine, I. and Lefever, R. (1968) Symmetry-breaking instabilities in dissipative systems. II. J. Chem. Phys. 48, 1695-1700
19. Castets, V., Dulos, E., Boissonade, J. and De Kepper, P. (1990) Experimental evidence of a sustained standing Turing-type nonequilibrium chemical pattern. Phys. Rev. Lett. 64, 2953
20. Boveri, T. (1904) Ergebnisse uber die Konstitution der chromatischen Substanz des Zellkerns, Gustav Fischer, Jena
21. Huxley, J.S. and De Beer, G.R. (1934) Elements of Experimental Embryology, Cambridge University Press
22. Wolpert, L. (1996) One hundred years of positional information. Trends Genet. 12, 359-364
23. Gierer, A. and Meinhardt, H. (1972) A theory of biological pattern formation. Kybernetik 12, 30-39
24. Meinhardt, H. (1982) Models of Biological Pattern Formation, Academic Press, London
25. Harrison, L.G, Snell, J., Verdi, R., Vogt, D.E., Zeiss, G.D. and Green, B.R. (1981) Hair morphogenesis in Acetabularia mediterranea: temperature-dependent spacing and models of morphogen waves. Protoplasma 106, 211-221
26. Harrison, L.G., Snell, J. and Verdi, R. (1984) Turing's model and pattern adjustment after temperature shock, with application to Acetabularia whorls. J. Theor. Biol. 106, 59-78
27. Harrison, L.G. and Hillier, N. (1985) Quantitative control of Acetabularia morphogenesis by extracellular calcium: a test of kinetic theory. J. Theor. Biol. 114, 177-192
28. Harrison, L.G., Donaldson, G., Lau, W., Lee, M., Lin, B.P., Lohachitranont, S., Setyawati, I. and Yue, J. (1997) CaEGTA uncompetitively inhibits calcium activation of whorl morphogenesis in Acetabularia. Protoplasma 196, 190-196
29. Harrison, L.G., Graham, K.T. and Lakowski, B.C. (1988) Calcium localization during Acetabularia whorl formation: evidence supporting a two-stage hierarchical mechanism. Development 104, 255-262
30. Dumais, J. and Harrison, L.G. (2000) Whorl morphogenesis in the dasycladalean algae: the pattern formation viewpoint. Philos. Trans. R. Soc. London Ser. B 355, 281-305
31. Goodwin, B.C. and Trainor, L.E.H. (1985) Tip and whorl morphogenesis in Acetabularia by calcium-regulated strain fields. J. Theor. Biol. 117, 79-106
32. Digiuni, S., Schellmann, S., Geier, F., Greese, B., Pesch, M., Wester, K., Dartan, B., Mach, V., Srinivas, B.P., Timmer, J. et al. (2008) A competitive complex formation mechanism underlies trichome patterning in Arabidopsis leaves. Mol. Sys. Biol. 4, 217
33. Crampin, E.J., Hackborn, W.W. and Maini, P.K. (2002) Pattern formation in reaction - diffusion models with nonuniform domain growth. Bull. Math. Biol. 64, 747-769
34. Neville, A.A., Matthews, P.C. and Byrne, H.M. (2006) Interactions between pattern formation and domain growth. Bull. Math. Biol. 68, 1975-2003
35. Salazar-Ciudad, I. and Jernvall, J. (2004) How different types of pattern formation mechanisms affect the evolution of form and development. Evol. Dev. 6, 6-16
36. Roussel, C.J. and Roussel, M.R. (2004) Reaction - diffusion models of development with state-dependent diffusion coefficients. Prog. Biophys. Mol. Biol. 86, 113-160
37. Holloway, D.M. and Lantin, M. (2002) Maintaining apical dominance in the fern gametophyte. Ann. Bot. 89, 409-417
38. Meindl, U. (1982) Local accumulations of membrane associated calcium according to cell pattern formation in Micrasterias denticulata, visualized by chlorotetracycline fluorescence. Protoplasma 110, 143-146
39. Kiermayer, O. and meindl. U. (1989) Cellular morphogenesis: the desmid (chlorophyceae) system. In Algae as Expermiental Systems (Coleman, A.W., Goff, L.J. and Stein-Taylor, J.R. eds), pp. 149-167, Alan R. Liss, New York
40. Bove, J., Vaillancourt, B., Kroeger, J., Hepler, P.K., Wiseman, P.W. and Geitmann, A. (2008) Magnitude and direction of vesicle dynamics in growing pollen tubes using spatiotemporal image correlation spectroscopy and fluorescence recovery after photobleaching. Plant Physiol. 147, 1646-1658
41. Cosgrove, D.J. (1996) Plant cell enlargement and the action of expansins. BioEssays 18, 533-540
42. Fleming, A.J., McQueen-Mason, S., Mandel, T. and Kuhlemeier, C. (1997) Induction of leaf primordia by the cell wall protein expansin. Science 276, 1415-1418
43. Harrison, L.G. and Kolář, M. (1988) Coupling between reaction - diffusion prepattern and expressed morphogenesis, applied to desmids and dasyclads. J. Theor. Biol. 130, 493-515
44. Holloway, D.M. and Harrison, L.G. (1999) Algal morphogenesis: modelling interspecific variation in Micrasterias with reaction-diffusion patterned catalysis of cell surface growth. Philos. Trans. R. Soc. London Ser. B 354, 417-433
45. Zimmermann, W. (1952) Main results of the telome theory. Paleobotanist 1, 456-470
46. Beerling, D.J. and Fleming, A.J. (2007) Zimmermann's telome theory of megaphyll leaf evolution: a molecular and cellular critique. Curr. Opin. Plant Biol. 10, 4-12
47. Harrison, L.G., Wehner, S. and Holloway, D.M. (2001) Complex morphogenesis of surfaces: theory and experiment on coupling of reaction - diffusion to growth. Faraday Discuss. 120, 277-294
48. Holloway, D.M. and Harrison, L.G. (2008) Pattern selection in plants: coupling chemical dynamics to surface growth in three dimensions. Ann. Bot. 101, 361-374
49. Lacalli, T.C. (1976) Morphogenesis in Micrasterias. III. The morphogenetic template. Protoplasma 88, 133-146
50. Harrison, L.G. and von Aderkas, P. (2004) Spatially quantitative control of the number of cotyledons in a clonal population of somatic embryos of hybrid larch Larix x leptoeuropaea. Ann. Bot. 93, 423-434
51. Harrison, L.G. (1993) Kinetic Theory of Living Pattern, Cambridge University Press, Cambridge