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Volumn 11, Issue , 2010, Pages

FunctSNP: An R package to link SNPs to functional knowledge and dbAutoMaker: A suite of Perl scripts to build SNP databases

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS RESOURCES; BIOINFORMATICS TOOLS; BIOLOGICAL FUNCTIONS; FUNCTIONAL ANNOTATION; FUNCTIONAL INFORMATION; NATIONAL CENTER FOR BIOTECHNOLOGY INFORMATIONS; RELATIONAL DATABASE; SINGLE NUCLEOTIDE POLYMORPHISMS;

EID: 77953206138     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-311     Document Type: Article
Times cited : (27)

References (24)
  • 1
    • 40949127393 scopus 로고    scopus 로고
    • How to interpret a genome-wide association study
    • 10.1001/jama.299.11.1335, 18349094
    • Pearson TA, Manolio TA. How to interpret a genome-wide association study. JAMA 2008, 299(11):1335-1344. 10.1001/jama.299.11.1335, 18349094.
    • (2008) JAMA , vol.299 , Issue.11 , pp. 1335-1344
    • Pearson, T.A.1    Manolio, T.A.2
  • 2
    • 0043267974 scopus 로고    scopus 로고
    • Haplotype blocks and linkage disequilibrium in the human genome
    • 10.1038/nrg1123, 12897771
    • Wall JD, Pritchard JK. Haplotype blocks and linkage disequilibrium in the human genome. Nature Reviews Genetics 2003, 4(8):587-597. 10.1038/nrg1123, 12897771.
    • (2003) Nature Reviews Genetics , vol.4 , Issue.8 , pp. 587-597
    • Wall, J.D.1    Pritchard, J.K.2
  • 3
    • 34447324105 scopus 로고    scopus 로고
    • GenABEL: an R library for genome-wide association analysis
    • 10.1093/bioinformatics/btm108, 17384015
    • Aulchenko YS, Ripke S, Isaacs A, van Duijn CM. GenABEL: an R library for genome-wide association analysis. Bioinformatics 2007, 23(10):1294-1296. 10.1093/bioinformatics/btm108, 17384015.
    • (2007) Bioinformatics , vol.23 , Issue.10 , pp. 1294-1296
    • Aulchenko, Y.S.1    Ripke, S.2    Isaacs, A.3    van Duijn, C.M.4
  • 4
    • 34047179603 scopus 로고    scopus 로고
    • SNPassoc: an R package to perform whole genome association studies
    • 10.1093/bioinformatics/btm025, 17237056
    • Gonzalez JR, Armengol L, Sole X, Guino E, Mercader JM, Estivill X, Moreno V. SNPassoc: an R package to perform whole genome association studies. Bioinformatics 2007, 23(5):654-a-655. 10.1093/bioinformatics/btm025, 17237056.
    • (2007) Bioinformatics , vol.23 , Issue.5 , pp. 654-655
    • Gonzalez, J.R.1    Armengol, L.2    Sole, X.3    Guino, E.4    Mercader, J.M.5    Estivill, X.6    Moreno, V.7
  • 6
    • 34250764323 scopus 로고    scopus 로고
    • GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products
    • 1793997, 17212835
    • Frohlich H, Speer N, Poustka A, Beissarth T. GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products. BMC Bioinformatics 2007, 8. 1793997, 17212835.
    • (2007) BMC Bioinformatics , pp. 8
    • Frohlich, H.1    Speer, N.2    Poustka, A.3    Beissarth, T.4
  • 7
    • 34848903220 scopus 로고    scopus 로고
    • From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data
    • 1847468, 17408505
    • Opgen-Rhein R, Strimmer K. From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data. Bmc Systems Biology 2007, 1. 1847468, 17408505.
    • (2007) Bmc Systems Biology , pp. 1
    • Opgen-Rhein, R.1    Strimmer, K.2
  • 8
    • 34147108263 scopus 로고    scopus 로고
    • Snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package
    • 10.1093/bioinformatics/btl657, 17234637
    • Luna A, Nicodemus KK. snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package. Bioinformatics 2007, 23(6):774-776. 10.1093/bioinformatics/btl657, 17234637.
    • (2007) Bioinformatics , vol.23 , Issue.6 , pp. 774-776
    • Luna, A.1    Nicodemus, K.K.2
  • 9
    • 56449109405 scopus 로고    scopus 로고
    • Genetical systems biology in livestock: application to gonadotrophin releasing hormone and reproduction
    • 10.1049/iet-syb:20070072, 19045837
    • Kadarmideen HN. Genetical systems biology in livestock: application to gonadotrophin releasing hormone and reproduction. Iet Systems Biology 2008, 2(6):423-441. 10.1049/iet-syb:20070072, 19045837.
    • (2008) Iet Systems Biology , vol.2 , Issue.6 , pp. 423-441
    • Kadarmideen, H.N.1
  • 10
    • 55549147191 scopus 로고    scopus 로고
    • Personal genomes: The case of the missing heritability
    • 10.1038/456018a, 18987709
    • Maher B. Personal genomes: The case of the missing heritability. Nature 2008, 456(7218):18-21. 10.1038/456018a, 18987709.
    • (2008) Nature , vol.456 , Issue.7218 , pp. 18-21
    • Maher, B.1
  • 11
    • 38549146891 scopus 로고    scopus 로고
    • ColiSNP database server mapping nsSNPs on protein structures
    • 2238833, 17921498
    • Kono H, Yuasa T, Nishiue S, Yura K. coliSNP database server mapping nsSNPs on protein structures. Nucl Acids Res 2008, 36(suppl_1):D409-413. 2238833, 17921498.
    • (2008) Nucl Acids Res , vol.36 , Issue.SUPPL. 1
    • Kono, H.1    Yuasa, T.2    Nishiue, S.3    Yura, K.4
  • 13
    • 33748672451 scopus 로고    scopus 로고
    • SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs
    • 10.1093/bioinformatics/btl348, 16809394
    • Reumers J, Maurer-Stroh S, Schymkowitz J, Rousseau F. SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs. Bioinformatics 2006, 22(17):2183-2185. 10.1093/bioinformatics/btl348, 16809394.
    • (2006) Bioinformatics , vol.22 , Issue.17 , pp. 2183-2185
    • Reumers, J.1    Maurer-Stroh, S.2    Schymkowitz, J.3    Rousseau, F.4
  • 14
    • 32544438941 scopus 로고    scopus 로고
    • EQTL Explorer: integrated mining of combined genetic linkage and expression experiments
    • 10.1093/bioinformatics/btk007, 16357031
    • Mueller M, Goel A, Thimma M, Dickens NJ, Aitman TJ, Mangion J. eQTL Explorer: integrated mining of combined genetic linkage and expression experiments. Bioinformatics 2006, 22(4):509-511. 10.1093/bioinformatics/btk007, 16357031.
    • (2006) Bioinformatics , vol.22 , Issue.4 , pp. 509-511
    • Mueller, M.1    Goel, A.2    Thimma, M.3    Dickens, N.J.4    Aitman, T.J.5    Mangion, J.6
  • 15
    • 67349130260 scopus 로고    scopus 로고
    • SNPit: A federated data integration system for the purpose of functional SNP annotation
    • 10.1016/j.cmpb.2009.02.010, 19327864
    • Shen TH, Carlson CS, Tarczy-Hornoch P. SNPit: A federated data integration system for the purpose of functional SNP annotation. Comput Methods Programs Biomed 2009, 95(2):181-189. 10.1016/j.cmpb.2009.02.010, 19327864.
    • (2009) Comput Methods Programs Biomed , vol.95 , Issue.2 , pp. 181-189
    • Shen, T.H.1    Carlson, C.S.2    Tarczy-Hornoch, P.3
  • 16
    • 33747871385 scopus 로고    scopus 로고
    • SNP Function Portal: a web database for exploring the function implication of SNP alleles
    • 10.1093/bioinformatics/btl241, 16873516
    • Wang PL, Dai MH, Xuan WJ, McEachin RC, Jackson AU, Scott LJ, Athey B, Watson SJ, Meng F. SNP Function Portal: a web database for exploring the function implication of SNP alleles. Bioinformatics 2006, 22(14):E523-E529. 10.1093/bioinformatics/btl241, 16873516.
    • (2006) Bioinformatics , vol.22 , Issue.14
    • Wang, P.L.1    Dai, M.H.2    Xuan, W.J.3    McEachin, R.C.4    Jackson, A.U.5    Scott, L.J.6    Athey, B.7    Watson, S.J.8    Meng, F.9
  • 17
    • 33747824819 scopus 로고    scopus 로고
    • PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes
    • 10.1093/nar/gkl071, 1538854, 16845085
    • Conde L, Vaquerizas JM, Dopazo H, Arbiza L, Reumers J, Rousseau F, Schymkowitz J, Dopazo J. PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. Nucleic Acids Res 2006, 34:W621-W625. 10.1093/nar/gkl071, 1538854, 16845085.
    • (2006) Nucleic Acids Res , vol.34
    • Conde, L.1    Vaquerizas, J.M.2    Dopazo, H.3    Arbiza, L.4    Reumers, J.5    Rousseau, F.6    Schymkowitz, J.7    Dopazo, J.8
  • 18
    • 61449107734 scopus 로고    scopus 로고
    • SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms
    • 10.1093/bioinformatics/btn653, 2647830, 19098027
    • Chelala C, Khan A, Lemoine NR. SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms. Bioinformatics 2009, 25(5):655-661. 10.1093/bioinformatics/btn653, 2647830, 19098027.
    • (2009) Bioinformatics , vol.25 , Issue.5 , pp. 655-661
    • Chelala, C.1    Khan, A.2    Lemoine, N.R.3
  • 19
    • 65649143465 scopus 로고    scopus 로고
    • LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures
    • 10.1093/bioinformatics/btp242, 19369493
    • Ryan M, Diekhans M, Lien S, Liu Y, Karchin R. LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures. Bioinformatics 2009, 25(11):1431-1432. 10.1093/bioinformatics/btp242, 19369493.
    • (2009) Bioinformatics , vol.25 , Issue.11 , pp. 1431-1432
    • Ryan, M.1    Diekhans, M.2    Lien, S.3    Liu, Y.4    Karchin, R.5
  • 20
    • 38549158538 scopus 로고    scopus 로고
    • F-SNP: computationally predicted functional SNPs for disease association studies
    • 10.1093/nar/gkm904, 2238878, 17986460
    • Lee PH, Shatkay H. F-SNP: computationally predicted functional SNPs for disease association studies. Nucleic Acids Res 2008, 36:D820-D824. 10.1093/nar/gkm904, 2238878, 17986460.
    • (2008) Nucleic Acids Res , vol.36
    • Lee, P.H.1    Shatkay, H.2
  • 22
    • 2942549111 scopus 로고    scopus 로고
    • A SNP-centric database for the investigation of the human genome
    • 333424, 14718068
    • Riva A, Kohane IS. A SNP-centric database for the investigation of the human genome. BMC Bioinformatics 2004, 5. 333424, 14718068.
    • (2004) BMC Bioinformatics , pp. 5
    • Riva, A.1    Kohane, I.S.2
  • 23
    • 33846093811 scopus 로고    scopus 로고
    • Snap: an integrated SNP annotation platform
    • 10.1093/nar/gkl969, 1751554, 17135198
    • Li ST, Ma LJ, Li H, Vang S, Hu YF, Bolund L, Wang J. Snap: an integrated SNP annotation platform. Nucleic Acids Res 2007, 35:D707-D710. 10.1093/nar/gkl969, 1751554, 17135198.
    • (2007) Nucleic Acids Res , vol.35
    • Li, S.T.1    Ma, L.J.2    Li, H.3    Vang, S.4    Hu, Y.F.5    Bolund, L.6    Wang, J.7
  • 24
    • 33645764714 scopus 로고    scopus 로고
    • SNPs3D: Candidate gene and SNP selection for association studies
    • 1361790, 16401345
    • Yue P, Melamud E, Moult J. SNPs3D: Candidate gene and SNP selection for association studies. BMC Bioinformatics 2006, 7. 1361790, 16401345.
    • (2006) BMC Bioinformatics , pp. 7
    • Yue, P.1    Melamud, E.2    Moult, J.3


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